Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Forward (+)

22482318 .. 22487444

Gene Structure 5127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G271200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGAGAAGTTATATTGTACGTGGAGGATTTGGATTTGAAATCCTGCTCAGCAATTTTAGTCTGTAGGATTTGCCATGAAGAAGAATTTGGAAGCTGTGAGAGCATGGAAGCTCCTTGTGCATGCTCCGGAACTGTTAAGTTTGCACACAGAAATTGCATACAGAGGTGGTGCAACGAGAAAGGCAATACAACCTGCGAAATATGTCTCCAGAGCTATGAACCTGGATACACAGCACCGCCAAAGAAGTCGCAGGTAGATGACACAGCAGTAACCATTAGAGATAGCGTGCAGGTTCCTAGAAGAGACCAAGAGTCACGAAGCCCAAGGTTAGACTTAGAGCGGGTGCAACCGATAGAAAATGTCTACTCTTCTCAATCTCAATGCTCGTCTGCAGGTGACAGAAGTGCGTCTTGTTGTCGATCACTGGCTCTACTTTTTACGGTGGTTTTGCTTGTGAGGCACCTCTTTGTGGTGCTTACCGGTAGCAACGAAGATAACCCTTTCACGCTTCTAACTGTACTTATTCTAAGGGCTAGCGGAATTATCCTTCCAATGTACATATTAATTCGAACAATCACAGCAATTCAAAACAATGTCCGGCAGCAGTATGGATATCATTATCAGGACTCTGATGATGAGACCTCAGACCTGGGAGACAACCAAGAAGAAGTAGAAGAAGATCAACATCATTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

234

Amino Acids

26.17

Weight (kDa)

4.79

Isoelectric Point (pI)

64.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	386
Acc36I	ACCTGC	4 cut(s)	203, 244, 283, 386
AccB1I	GGYRCC	1 cut(s)	462
AccBSI	CCGCTC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	366
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	3 cut(s)	239, 343, 540
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	3 cut(s)	20, 522, 560
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgeI	ACCGGT	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	40, 590
AhdI	GACNNNNNGTC	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	223, 651
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	3 cut(s)	96, 113, 216
AluI	AGCT	3 cut(s)	96, 113, 216
Alw26I	GTCTC	4 cut(s)	212, 300, 635, 651
Aor13HI	TCCGGA	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	1 cut(s)	86
AseI	ATTAAT	1 cut(s)	566
AsiGI	ACCGGT	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	410
AsuII	TTCGAA	1 cut(s)	571
AsuNHI	GCTAGC	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	616
BciT130I	CCWGG	2 cut(s)	225, 653
BciVI	GTATCC	1 cut(s)	221
BcoDI	GTCTC	4 cut(s)	212, 300, 635, 651
BfaI	CTAG	2 cut(s)	300, 537
BfmI	CTRYAG	2 cut(s)	64, 393
BfuAI	ACCTGC	4 cut(s)	203, 244, 283, 386
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	605
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	606
Bme1390I	CCNGG	2 cut(s)	225, 653
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	297, 464
BmrFI	CCNGG	2 cut(s)	225, 653
BmtI	GCTAGC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	194
Bpu1102I	GCTNAGC	1 cut(s)	49
Bpu14I	TTCGAA	1 cut(s)	571
BsaAI	YACGTR	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	687
BsaI	GGTCTC	2 cut(s)	300, 635
BsaJI	CCNNGG	2 cut(s)	326, 652
BsaWI	WCCGGW	2 cut(s)	128, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	687
BseAI	TCCGGA	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	225, 653
BseDI	CCNNGG	2 cut(s)	326, 652
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	2 cut(s)	63, 660
BseNI	ACTGG	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	462
BshTI	ACCGGT	1 cut(s)	482
BsiSI	CCGG	3 cut(s)	129, 483, 601
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	4 cut(s)	212, 300, 635, 651
Bso31I	GGTCTC	2 cut(s)	300, 635
Bsp119I	TTCGAA	1 cut(s)	571
Bsp13I	TCCGGA	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	422, 682
Bsp1720I	GCTNAGC	1 cut(s)	49
BspACI	CCGC	3 cut(s)	239, 343, 540
BspCNI	CTCAG	2 cut(s)	62, 659
BspEI	TCCGGA	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	297, 464
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	4 cut(s)	203, 244, 283, 386
BspOI	GCTAGC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	462
BspTNI	GGTCTC	2 cut(s)	300, 635
BsrBI	CCGCTC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	2 cut(s)	326, 652
BssMI	GATC	2 cut(s)	422, 682
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	2 cut(s)	225, 653
Bst4CI	ACNGT	3 cut(s)	136, 445, 520
Bst6I	CTCTTC	2 cut(s)	298, 376
BstAUI	TGTACA	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	3 cut(s)	124, 290, 538
BstDEI	CTNAG	4 cut(s)	49, 337, 530, 646
BstKTI	GATC	2 cut(s)	425, 685
BstMAI	GTCTC	4 cut(s)	212, 300, 635, 651
BstMBI	GATC	2 cut(s)	422, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 119, 460
BstNI	CCWGG	2 cut(s)	225, 653
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	223, 651
BstSFI	CTRYAG	2 cut(s)	64, 393
BstV1I	GCAGC	1 cut(s)	616
BsuI	GTATCC	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	425
BveI	ACCTGC	4 cut(s)	203, 244, 283, 386
Cac8I	GCNNGC	3 cut(s)	124, 290, 538
Cfr10I	RCCGGY	1 cut(s)	482
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	3 cut(s)	19, 521, 559
CspAI	ACCGGT	1 cut(s)	482
CviAII	CATG	3 cut(s)	77, 106, 123
CviJI	RGCY	6 cut(s)	96, 113, 216, 324, 431, 536
CviKI_1	RGCY	6 cut(s)	96, 113, 216, 324, 431, 536
CviQI	GTAC	3 cut(s)	19, 521, 559
DdeI	CTNAG	4 cut(s)	49, 337, 530, 646
DpnI	GATC	2 cut(s)	424, 684
DpnII	GATC	2 cut(s)	422, 682
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	298, 376
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	2 cut(s)	298, 376
Eco130I	CCWWGG	1 cut(s)	326
Eco31I	GGTCTC	2 cut(s)	300, 635
Eco32I	GATATC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	223, 651
EcoRV	GATATC	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	3 cut(s)	80, 109, 126
FaiI	YATR	9 cut(s)	14, 78, 107, 124, 161, 205, 219, 563, 612
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FatI	CATG	3 cut(s)	76, 105, 122
FauI	CCCGC	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	605
Fsp4HI	GCNGC	1 cut(s)	605
FspBI	CTAG	2 cut(s)	300, 537
GluI	GCNGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	194
HapII	CCGG	3 cut(s)	129, 483, 601
HgaI	GACGC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	80, 109, 126
HinfI	GANTC	2 cut(s)	314, 629
HpaII	CCGG	3 cut(s)	129, 483, 601
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	634, 649
Hpy188III	TCNNGA	4 cut(s)	129, 211, 318, 626
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	560
HpyCH4III	ACNGT	3 cut(s)	136, 445, 520
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	7 cut(s)	122, 146, 159, 174, 292, 349, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 119, 460
HpyF3I	CTNAG	4 cut(s)	49, 337, 530, 646
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	80, 109, 126
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	422, 682
LmnI	GCTCC	2 cut(s)	118, 131
Lsp1109I	GCAGC	1 cut(s)	616
MaeI	CTAG	2 cut(s)	300, 537
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	271, 315, 398
MalI	GATC	2 cut(s)	424, 684
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	2 cut(s)	422, 682
MboII	GAAGA	8 cut(s)	92, 95, 315, 363, 506, 680, 689, 692
MluCI	AATT	6 cut(s)	54, 86, 154, 543, 567, 585
MlyI	GAGTC	2 cut(s)	323, 623
MnlI	CCTC	5 cut(s)	19, 159, 453, 476, 655
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	3 cut(s)	138, 566, 700
MspI	CCGG	3 cut(s)	129, 483, 601
MspR9I	CCNGG	2 cut(s)	225, 653
MvaI	CCWGG	2 cut(s)	225, 653
MwoI	GCNNNNNNNGC	3 cut(s)	102, 119, 460
NdeII	GATC	2 cut(s)	422, 682
NheI	GCTAGC	1 cut(s)	536
NlaIII	CATG	3 cut(s)	80, 109, 126
NlaIV	GGNNCC	2 cut(s)	297, 464
NmuCI	GTSAC	2 cut(s)	315, 398
NspI	RCATGY	1 cut(s)	126
NspV	TTCGAA	1 cut(s)	571
PaeI	GCATGC	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	386
PinAI	ACCGGT	1 cut(s)	482
PkrI	GCNGC	1 cut(s)	606
PleI	GAGTC	2 cut(s)	322, 623
PpsI	GAGTC	2 cut(s)	322, 623
Ppu21I	YACGTR	1 cut(s)	22
PshBI	ATTAAT	1 cut(s)	566
Psp6I	CCWGG	2 cut(s)	223, 651
PspGI	CCWGG	2 cut(s)	223, 651
PspN4I	GGNNCC	2 cut(s)	297, 464
PstI	CTGCAG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	20, 522, 560
RsaNI	GTAC	3 cut(s)	19, 521, 559
SaqAI	TTAA	3 cut(s)	138, 566, 700
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	2 cut(s)	422, 682
SchI	GAGTC	2 cut(s)	323, 623
ScrFI	CCNGG	2 cut(s)	225, 653
SfcI	CTRYAG	2 cut(s)	64, 393
SfuI	TTCGAA	1 cut(s)	571
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	6 cut(s)	54, 86, 154, 543, 567, 585
SsiI	CCGC	3 cut(s)	239, 343, 540
SspMI	CTAG	2 cut(s)	300, 537
StyD4I	CCNGG	2 cut(s)	223, 651
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	3 cut(s)	136, 445, 520
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	421, 571
TasI	AATT	6 cut(s)	54, 86, 154, 543, 567, 585
TatI	WGTACW	2 cut(s)	520, 558
Tru1I	TTAA	3 cut(s)	138, 566, 700
Tru9I	TTAA	3 cut(s)	138, 566, 700
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	2 cut(s)	315, 398
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	2 cut(s)	315, 398
TspDTI	ATGAA	2 cut(s)	93, 234
TspRI	CASTG	1 cut(s)	432
VspI	ATTAAT	1 cut(s)	566
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	2 cut(s)	300, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.