Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Forward (+)

55659954 .. 55660981

Gene Structure 1028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG471800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGGAGATGTCATCATCATATACGTTGAGGATGAGCACGATTTCAAATCATGTTCATCATCAGTTTCGTCAGTCTGTAGGATTTGCCATGAAGAAGAATCCAACAACTTGGAATCTCCTTGTGCTTGCTCTGGAACTGTTAAGTTTGCGCACAGAGATTGCATACAGAGGTGGTGCAATGAGAAAGGAAACACAACCTGCGAAATTTGCCTCCAGAAGTATGAACCTGGATACACAGCACCTCCTCCAAAGAAGTCTCAGCTGGATGAATCAGCAGTAACCATCAGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

97

Amino Acids

10.88

Weight (kDa)

5.08

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	26 - 70	3.5e-15	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	39
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	37, 271
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	37, 271
BstHHI	GCGC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	37, 271
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	151
CviAII	CATG	2 cut(s)	51, 89
CviJI	RGCY	1 cut(s)	262
CviKI_1	RGCY	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	54, 92
FaiI	YATR	6 cut(s)	20, 22, 52, 90, 164, 222
FatI	CATG	2 cut(s)	50, 88
FokI	GGATG	2 cut(s)	44, 278
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	54, 92
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	98, 113, 269
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	2 cut(s)	132, 214
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	162, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	54, 92
HspAI	GCGC	1 cut(s)	149
LpnPI	CCDG	6 cut(s)	117, 211, 213, 227, 240, 248
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	104, 107
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	22, 162, 221, 252, 255
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	54, 92
NsbI	TGCGCA	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	98, 113, 269
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	27, 173, 200, 229, 244, 264
SfcI	CTRYAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	27
TasI	AATT	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	98, 113, 269
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	45, 105, 237, 282
XapI	RAATTY	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.