Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Reverse (-)

1077608 .. 1080095

Gene Structure 2488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGAGATATCATGATATACGTTGAGGATGAGCACGATTTCAAATCATGTTCATCATCAGTTTCAGTCTGTAGGATTTGCCATGAAGAAGACTCCAACAACTTGGAATCTCCTTGTGCTTGCTCTGGAACTGTTAAGTTTGCGCACAGAGATTGCATACAGAGGTGGTGCAACGAGAAAGGAAACACAACCTGCGAAATTTGTCTCCAGAAGTATGAACCTGGATACACAGCACCTCCTCCAAAGAAGTCTCAGCTGGATGAATCAGCAGTAACCATCAGAGATAGCGTGCGGGTTCCTAGAAGAAGAGAGCAAGATGAGGAATCAGCAAGCCCCGGATTAGAGAGGGTATGCTCGTCTACTGCTGATCGAAGTGCCAATTTTTGTAGATCACTCGCTCTCCTTTTTACGGTGGTTTTGCTTGTGAGGCACCTCTTTGTGGTGCTTACTGGTAGTGACGAAGAATACCCCTTCGCCCTTCTTACTGTACTTATTCTAAGGGCTAGCGGAATTATCCTACCTATGTATCTATTATACCGAACAATCACAGCAATTCAGAACAGCATCCATCAACAATATCAATATCATTACCAGGAGGACTCCGATGATGATGATGATGAGACCTCAAACCTCGGAGAAGATGACCACCACCAAGGAGATGCCGATCATCATCAACAAAGTGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

229

Amino Acids

25.9

Weight (kDa)

4.8

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	24 - 68	1.7e-14	RING-variant domain
DUF3675	PF12428	74 - 182	3.5e-27	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	359
AciI	CCGC	2 cut(s)	292, 507
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	2 cut(s)	409, 439
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	220, 591
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	3 cut(s)	209, 255, 614
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	336
AsuNHI	GCTAGC	1 cut(s)	503
BaeI	ACNNNNGTAYC	2 cut(s)	509, 542
BanI	GGYRCC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	284, 576
BciT130I	CCWGG	2 cut(s)	222, 593
BciVI	GTATCC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	3 cut(s)	209, 255, 614
BfaI	CTAG	2 cut(s)	300, 504
BfmI	CTRYAG	1 cut(s)	70
BfuAI	ACCTGC	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	218
Bme1390I	CCNGG	3 cut(s)	222, 336, 593
BmiI	GGNNCC	2 cut(s)	297, 431
BmrFI	CCNGG	3 cut(s)	222, 336, 593
BmsI	GCATC	2 cut(s)	573, 649
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	336
BsaBI	GATNNNNATC	2 cut(s)	663, 669
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	3 cut(s)	334, 631, 652
BsaXI	ACNNNNNCTCC	4 cut(s)	220, 250, 384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 439
Bse1I	ACTGG	1 cut(s)	454
Bse8I	GATNNNNATC	2 cut(s)	663, 669
BseBI	CCWGG	2 cut(s)	222, 593
BseDI	CCNNGG	3 cut(s)	334, 631, 652
BseGI	GGATG	3 cut(s)	34, 265, 564
BseJI	GATNNNNATC	2 cut(s)	663, 669
BseLI	CCNNNNNNNGG	2 cut(s)	409, 439
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	336
BslI	CCNNNNNNNGG	2 cut(s)	409, 439
BsmAI	GTCTC	3 cut(s)	209, 255, 614
Bso31I	GGTCTC	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	367, 389, 664
BspACI	CCGC	2 cut(s)	292, 507
BspCNI	CTCAG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	297, 431
BspMI	ACCTGC	1 cut(s)	200
BspOI	GCTAGC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	334, 631, 652
BssMI	GATC	3 cut(s)	367, 389, 664
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	2 cut(s)	222, 593
Bst4CI	ACNGT	3 cut(s)	133, 412, 487
Bst6I	CTCTTC	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	121, 290, 331, 505
BstDEI	CTNAG	2 cut(s)	252, 497
BstF5I	GGATG	3 cut(s)	34, 265, 564
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	370, 392, 667
BstMAI	GTCTC	3 cut(s)	209, 255, 614
BstMBI	GATC	3 cut(s)	367, 389, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	2 cut(s)	222, 593
BstSCI	CCNGG	3 cut(s)	220, 334, 591
BstSFI	CTRYAG	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	218
BtsCI	GGATG	3 cut(s)	34, 265, 564
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	4 cut(s)	121, 290, 331, 505
CciI	TCATGA	1 cut(s)	12
CfoI	GCGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	3 cut(s)	13, 48, 83
CviJI	RGCY	3 cut(s)	256, 333, 503
CviKI_1	RGCY	3 cut(s)	256, 333, 503
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	2 cut(s)	252, 497
DpnI	GATC	3 cut(s)	369, 391, 666
DpnII	GATC	3 cut(s)	367, 389, 664
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	652
Eco31I	GGTCTC	1 cut(s)	614
Eco32I	GATATC	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	220, 591
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	3 cut(s)	16, 51, 86
FaiI	YATR	9 cut(s)	14, 19, 49, 84, 158, 216, 352, 524, 535
FatI	CATG	3 cut(s)	12, 47, 82
FauI	CCCGC	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	359
FokI	GGATG	3 cut(s)	41, 272, 551
FspBI	CTAG	2 cut(s)	300, 504
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	191
HapII	CCGG	1 cut(s)	336
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	3 cut(s)	16, 51, 86
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	5 cut(s)	92, 107, 263, 323, 599
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	4 cut(s)	281, 558, 604, 635
Hpy188III	TCNNGA	3 cut(s)	13, 126, 208
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	2 cut(s)	481, 488
HpyCH4III	ACNGT	3 cut(s)	133, 412, 487
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	156, 171, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	2 cut(s)	252, 497
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	16, 51, 86
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	3 cut(s)	367, 389, 664
LweI	GCATC	2 cut(s)	573, 649
MaeI	CTAG	2 cut(s)	300, 504
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	271, 455
MalI	GATC	3 cut(s)	369, 391, 666
MboI	GATC	3 cut(s)	367, 389, 664
MboII	GAAGA	6 cut(s)	98, 101, 315, 318, 473, 650
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	4 cut(s)	198, 379, 510, 552
MlyI	GAGTC	2 cut(s)	86, 593
MmeI	TCCRAC	1 cut(s)	120
MseI	TTAA	2 cut(s)	135, 688
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	3 cut(s)	222, 336, 593
MvaI	CCWGG	2 cut(s)	222, 593
MwoI	GCNNNNNNNGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	367, 389, 664
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	3 cut(s)	16, 51, 86
NlaIV	GGNNCC	2 cut(s)	297, 431
NmuCI	GTSAC	1 cut(s)	455
NsbI	TGCGCA	1 cut(s)	144
PagI	TCATGA	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	107, 263, 323
PleI	GAGTC	2 cut(s)	86, 593
PpsI	GAGTC	2 cut(s)	86, 593
Psp6I	CCWGG	2 cut(s)	220, 591
PspGI	CCWGG	2 cut(s)	220, 591
PspN4I	GGNNCC	2 cut(s)	297, 431
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	135, 688
Sau3AI	GATC	3 cut(s)	367, 389, 664
SchI	GAGTC	2 cut(s)	86, 593
ScrFI	CCNGG	3 cut(s)	222, 336, 593
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	573, 649
SfcI	CTRYAG	1 cut(s)	70
Sse9I	AATT	4 cut(s)	198, 379, 510, 552
SsiI	CCGC	2 cut(s)	292, 507
SspMI	CTAG	2 cut(s)	300, 504
StyD4I	CCNGG	3 cut(s)	220, 334, 591
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	3 cut(s)	133, 412, 487
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	370
TasI	AATT	4 cut(s)	198, 379, 510, 552
TatI	WGTACW	1 cut(s)	487
TfiI	GAWTC	3 cut(s)	107, 263, 323
Tru1I	TTAA	2 cut(s)	135, 688
Tru9I	TTAA	2 cut(s)	135, 688
TseFI	GTSAC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	4 cut(s)	42, 99, 231, 276
XapI	RAATTY	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	2 cut(s)	300, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.