Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Reverse (-)

913334 .. 916509

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02075.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAGATGTGATTTTGTTCATTGATGATACGAAATCGAAAGTGAGAATCACGCGTTGCAGAATTTGCCATGAAGAAGAAGAAGAAAGTTTCTTCGAAGTTCCATGTGCTTGTTCAGGCACCGTTAAGTTCGCACATAGAAACTGCATACAACGTTGGTGTAATGAAAAAGGAAACACAACTTGTGAAATCTGTCTTCAGGTGTATAAAGATGGATATACAGCAGTTTTAAAACAATCGAAATTGATTGAACAAGAAGTCACAATCAGAGTAAATGGACGAAGAAGAAGAAGAAGTAGAAGATTAGTGTCTATAGCTGAATCCGATATTTCTCAGTGTAATTCTGTTGCTGATAGAGGAGCTTCGTTTTGCAGATCATTAACTTTTACTCTTTCAGTATTTTTGCTGATGAAACATACATTCGATGTGATTTACGGAACCGAAGAATATCCATTCTCTGTATTTACGGTACTAACATTAAAGGCCATTGGGATACTATTGCCAATGTTCATTATAATTCGAACAATCTCAACTATTCAGAAAACTCTTCGTCGTCGTCATCAATATCCTGAATCTGAAGAAGAAGATAGGTTGAGCTCTGACGACGACGATGACTTGGAAGAAGAAGATGAAGAGCAACAACAACATTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

218

Amino Acids

25.32

Weight (kDa)

5.5

Isoelectric Point (pI)

73.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	20 - 65	1.4e-14	RING-variant domain
DUF3675	PF12428	72 - 160	1.2e-12	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	1 cut(s)	55
AclI	AACGTT	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	2 cut(s)	182, 597
AfaI	GTAC	1 cut(s)	471
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	3 cut(s)	317, 362, 597
AluI	AGCT	3 cut(s)	317, 362, 597
Alw21I	GWGCWC	1 cut(s)	599
AoxI	GGCC	1 cut(s)	483
ApoI	RAATTY	1 cut(s)	63
AsuII	TTCGAA	2 cut(s)	96, 520
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	599
BccI	CCATC	1 cut(s)	206
BciVI	GTATCC	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	486
BmiI	GGNNCC	2 cut(s)	121, 439
BpiI	GAAGAC	1 cut(s)	188
Bpu14I	TTCGAA	2 cut(s)	96, 520
BseMII	CTCAG	1 cut(s)	347
BseRI	GAGGAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	485
Bsp119I	TTCGAA	2 cut(s)	96, 520
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp143I	GATC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	121, 439
BspQI	GCTCTTC	1 cut(s)	627
BspT104I	TTCGAA	2 cut(s)	96, 520
BspT107I	GGYRCC	1 cut(s)	119
BssMI	GATC	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	124, 469
Bst6I	CTCTTC	2 cut(s)	552, 627
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstBI	TTCGAA	2 cut(s)	96, 520
BstDEI	CTNAG	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	188
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	2 cut(s)	71, 105
CviJI	RGCY	5 cut(s)	317, 362, 485, 597, 653
CviKI_1	RGCY	5 cut(s)	317, 362, 485, 597, 653
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	1 cut(s)	376
DpnII	GATC	1 cut(s)	374
DraI	TTTAAA	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	552, 627
EarI	CTCTTC	2 cut(s)	552, 627
Ecl136II	GAGCTC	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	599
Eco53kI	GAGCTC	1 cut(s)	597
Eco57I	CTGAAG	2 cut(s)	182, 597
EcoICRI	GAGCTC	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	599
FaeI	CATG	2 cut(s)	74, 108
FaiI	YATR	9 cut(s)	72, 106, 138, 149, 207, 219, 314, 417, 515
FatI	CATG	2 cut(s)	70, 104
FriOI	GRGCYC	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	485
Hin1II	CATG	2 cut(s)	74, 108
HinfI	GANTC	3 cut(s)	48, 320, 572
Hpy188I	TCNGA	5 cut(s)	269, 325, 540, 577, 601
Hpy188III	TCNNGA	1 cut(s)	569
Hpy99I	CGWCG	4 cut(s)	555, 558, 608, 611
HpyCH4III	ACNGT	2 cut(s)	124, 469
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	3 cut(s)	60, 147, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	74, 108
Kzo9I	GATC	1 cut(s)	374
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	3 cut(s)	102, 185, 582
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	376
MboI	GATC	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	599
MluCI	AATT	4 cut(s)	63, 242, 340, 516
MluI	ACGCGT	1 cut(s)	53
MnlI	CCTC	1 cut(s)	350
MseI	TTAA	5 cut(s)	126, 230, 380, 479, 655
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	374
NlaIII	CATG	2 cut(s)	74, 108
NlaIV	GGNNCC	2 cut(s)	121, 439
NmuCI	GTSAC	1 cut(s)	259
NspV	TTCGAA	2 cut(s)	96, 520
PciSI	GCTCTTC	1 cut(s)	627
PfeI	GAWTC	3 cut(s)	48, 320, 572
PsiI	TTATAA	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	121, 439
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	599
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	5 cut(s)	126, 230, 380, 479, 655
Sau3AI	GATC	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	599
SetI	ASST	6 cut(s)	157, 204, 319, 364, 593, 599
SfcI	CTRYAG	1 cut(s)	312
SfuI	TTCGAA	2 cut(s)	96, 520
Sse9I	AATT	4 cut(s)	63, 242, 340, 516
SstI	GAGCTC	1 cut(s)	599
TaaI	ACNGT	2 cut(s)	124, 469
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	5 cut(s)	38, 96, 239, 423, 520
TasI	AATT	4 cut(s)	63, 242, 340, 516
TfiI	GAWTC	3 cut(s)	48, 320, 572
Tru1I	TTAA	5 cut(s)	126, 230, 380, 479, 655
Tru9I	TTAA	5 cut(s)	126, 230, 380, 479, 655
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	6 cut(s)	10, 87, 180, 425, 499, 645
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.