Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Reverse (-)

23249393 .. 23250825

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g23430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAGATAGATGACTCAGCAGTAACAATTAGAGACAGCGTGCAGGTTCCGAGAAGAGAGCTAGAGCAAGAGGAGGAGGAGGAGGAGGGCGCAGGAAGCCCTAGATTAGCAATAGAAAATGGCTACTCTTCTTCTCAATGCTCGTATGCGGCTGACAGAAGTGCATCTTGTTGTCGATCTCTCGCTCTCCTTTTTACGGTGGTATTGCTGGTGAGGCACCTCTTTGTGGTGCTTACCGGTTCCGACGAAGATTACCCCTTCACGCTTCTAACTGTGCTTATTATAAAGTCTAGCGGGATTATCCTGCCAATGTACATATTATTTCGAACAATCACAGCCATCCAAAACAGCATACACCGCCAGTATCATCGATATCATCGTTATGAACAAGGAGGCTCTGAAGATGAGACCGATAGCGAAGACCTGGCTGACAATGAAGAAGCTCAACAACATCATATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

155

Amino Acids

17.45

Weight (kDa)

4.65

Isoelectric Point (pI)

67.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3675	PF12428	3 - 111	3.9e-26	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	216
AciI	CCGC	3 cut(s)	149, 294, 358
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	196, 226
AgeI	ACCGGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	2 cut(s)	61, 443
AluI	AGCT	2 cut(s)	61, 443
Alw26I	GTCTC	2 cut(s)	27, 401
AsiGI	ACCGGT	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	426
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	27, 401
BfaI	CTAG	3 cut(s)	62, 102, 291
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	425
BmiI	GGNNCC	3 cut(s)	48, 218, 241
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	401
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 226
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	425
BseCI	ATCGAT	1 cut(s)	370
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	196, 226
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	5 cut(s)	86, 89, 92, 95, 98
BsgI	GTGCAG	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	216
BshTI	ACCGGT	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	196, 226
BsmAI	GTCTC	2 cut(s)	27, 401
Bso31I	GGTCTC	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	176
BspACI	CCGC	3 cut(s)	149, 294, 358
BspCNI	CTCAG	1 cut(s)	29
BspDI	ATCGAT	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	48, 218, 241
BspMI	ACCTGC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	199, 274
Bst6I	CTCTTC	2 cut(s)	49, 133
BstAUI	TGTACA	1 cut(s)	312
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	2 cut(s)	27, 401
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 214, 357
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	370
BsuTUI	ATCGAT	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	313
CspAI	ACCGGT	1 cut(s)	236
CviJI	RGCY	8 cut(s)	61, 99, 123, 152, 338, 396, 428, 443
CviKI_1	RGCY	8 cut(s)	61, 99, 123, 152, 338, 396, 428, 443
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
Eam1104I	CTCTTC	2 cut(s)	49, 133
EarI	CTCTTC	2 cut(s)	49, 133
Eco31I	GGTCTC	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	374
FaiI	YATR	7 cut(s)	147, 284, 317, 353, 384, 456, 463
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	3 cut(s)	62, 102, 291
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	150
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	51, 244, 400
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	199, 274
HpyCH4V	TGCA	3 cut(s)	4, 43, 164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 214, 357
HpyF3I	CTNAG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	176
LpnPI	CCDG	8 cut(s)	29, 78, 194, 250, 317, 374, 410, 437
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	3 cut(s)	62, 102, 291
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	7 cut(s)	66, 120, 123, 260, 413, 431, 449
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	9 cut(s)	64, 67, 70, 73, 76, 79, 207, 230, 386
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	96, 214, 357
NdeII	GATC	1 cut(s)	176
NlaIV	GGNNCC	3 cut(s)	48, 218, 241
NspV	TTCGAA	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	48, 218, 241
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	381
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	425
SetI	ASST	5 cut(s)	48, 63, 222, 426, 445
SfaNI	GCATC	1 cut(s)	173
SfuI	TTCGAA	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	3 cut(s)	149, 294, 358
SspMI	CTAG	3 cut(s)	62, 102, 291
StyD4I	CCNGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	199, 274
TaqI	TCGA	3 cut(s)	175, 325, 370
TaqII	GACCGA	1 cut(s)	425
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	399, 450
XspI	CTAG	3 cut(s)	62, 102, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.