Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Forward (+)

69103962 .. 69106295

Gene Structure 2334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG485600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGAGATGCCATCATCATATACGTTGAGGATGAGCACGATTTCAAATCATGTTCATCATCAGTTTCAGTCTGTAGGATTTGCCATGAAGAAGAATCCAACAACTTGGAATCTCCTTGTGCTTGCTCTGGAACTGTTAAGTTTGCGCACAGAGATTGCATACAGAGGTGGTGCAATGAGAAAGGAAACACAACCTGCGAAATTTGTCTCCAGAAGTATGAACCTGGATACACAGCACCTCCTCCAAAGAAGTCTCAGCTGGATGAATCAGCAGTAACCATCAGAGATAGCGTGCGGGTTCCTAGAAGAAGAGAGCAAGATGAGGAATCAGCAAGCCCCAGATTAGAGAGGGTATGCTCCTCTACTGCTGATCGAAGTGCCAATTTTTGTCGATCACTCGCTCTCCTTTTTACGGTGGTTTTGCTTGTGAGGCACCTCTTTGTGGTGCTTACTGGTAGTGACGAAGAATACCCCTTCGCCCTTCTTACTGTACTTATTCTAAGGGCTAGCGGAATTATCCTACCTATGTACATATTATACCGAACAATCACAGCAATTCAGAACAGCATCCATCAACAATATCAATATCATTACCAGGAGGACTCCGATGATGATGATGAGACCTCAAACCTCGGAGAAGATGACCACCACCAAGAAGATGCCGATCATCATCAACAAAGTGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

229

Amino Acids

26.02

Weight (kDa)

4.88

Isoelectric Point (pI)

61.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	25 - 69	1.9e-14	RING-variant domain
DUF3675	PF12428	75 - 183	4.1e-28	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	432
AciI	CCGC	2 cut(s)	295, 510
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	2 cut(s)	492, 530
AfiI	CCNNNNNNNGG	2 cut(s)	412, 442
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	223, 594
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	3 cut(s)	212, 258, 614
ApoI	RAATTY	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	148
AsuNHI	GCTAGC	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	39
BccI	CCATC	3 cut(s)	20, 287, 579
BciT130I	CCWGG	2 cut(s)	225, 596
BciVI	GTATCC	1 cut(s)	221
BcoDI	GTCTC	3 cut(s)	212, 258, 614
BfaI	CTAG	2 cut(s)	303, 507
BfmI	CTRYAG	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	225, 596
BmiI	GGNNCC	2 cut(s)	300, 434
BmrFI	CCNGG	2 cut(s)	225, 596
BmsI	GCATC	2 cut(s)	576, 649
BmtI	GCTAGC	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	194
BsaBI	GATNNNNATC	2 cut(s)	663, 669
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	631
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 387, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 442
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	181
Bse8I	GATNNNNATC	2 cut(s)	663, 669
BseBI	CCWGG	2 cut(s)	225, 596
BseDI	CCNNGG	1 cut(s)	631
BseGI	GGATG	3 cut(s)	37, 268, 567
BseJI	GATNNNNATC	2 cut(s)	663, 669
BseLI	CCNNNNNNNGG	2 cut(s)	412, 442
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	2 cut(s)	231, 349
BshNI	GGYRCC	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	412, 442
BsmAI	GTCTC	3 cut(s)	212, 258, 614
Bso31I	GGTCTC	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	370, 392, 664
BspACI	CCGC	2 cut(s)	295, 510
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	300, 434
BspMI	ACCTGC	1 cut(s)	203
BspOI	GCTAGC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	3 cut(s)	370, 392, 664
Bst2UI	CCWGG	2 cut(s)	225, 596
Bst4CI	ACNGT	3 cut(s)	136, 415, 490
Bst6I	CTCTTC	1 cut(s)	304
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	4 cut(s)	124, 293, 334, 508
BstDEI	CTNAG	2 cut(s)	255, 500
BstF5I	GGATG	3 cut(s)	37, 268, 567
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	3 cut(s)	373, 395, 667
BstMAI	GTCTC	3 cut(s)	212, 258, 614
BstMBI	GATC	3 cut(s)	370, 392, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	2 cut(s)	225, 596
BstSCI	CCNGG	2 cut(s)	223, 594
BstSFI	CTRYAG	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	37, 268, 567
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	4 cut(s)	124, 293, 334, 508
CfoI	GCGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	491, 529
CviAII	CATG	2 cut(s)	51, 86
CviJI	RGCY	3 cut(s)	259, 336, 506
CviKI_1	RGCY	3 cut(s)	259, 336, 506
CviQI	GTAC	2 cut(s)	491, 529
DdeI	CTNAG	2 cut(s)	255, 500
DpnI	GATC	3 cut(s)	372, 394, 666
DpnII	GATC	3 cut(s)	370, 392, 664
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	223, 594
FaeI	CATG	2 cut(s)	54, 89
FatI	CATG	2 cut(s)	50, 85
FauI	CCCGC	1 cut(s)	288
FokI	GGATG	3 cut(s)	44, 275, 554
FspBI	CTAG	2 cut(s)	303, 507
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	54, 89
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	5 cut(s)	95, 110, 266, 326, 602
Hpy188I	TCNGA	4 cut(s)	284, 561, 607, 635
Hpy188III	TCNNGA	2 cut(s)	129, 211
HpyAV	CCTTC	2 cut(s)	484, 491
HpyCH4III	ACNGT	3 cut(s)	136, 415, 490
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	159, 174, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	2 cut(s)	255, 500
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	54, 89
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	370, 392, 664
LmnI	GCTCC	1 cut(s)	362
LweI	GCATC	2 cut(s)	576, 649
MaeI	CTAG	2 cut(s)	303, 507
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	274, 458
MalI	GATC	3 cut(s)	372, 394, 666
MboI	GATC	3 cut(s)	370, 392, 664
MboII	GAAGA	7 cut(s)	101, 104, 318, 321, 476, 650, 668
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	4 cut(s)	201, 382, 513, 555
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	1 cut(s)	123
MseI	TTAA	2 cut(s)	138, 688
MspA1I	CMGCKG	1 cut(s)	259
MspR9I	CCNGG	2 cut(s)	225, 596
MvaI	CCWGG	2 cut(s)	225, 596
MwoI	GCNNNNNNNGC	1 cut(s)	430
NdeII	GATC	3 cut(s)	370, 392, 664
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	2 cut(s)	54, 89
NlaIV	GGNNCC	2 cut(s)	300, 434
NmuCI	GTSAC	1 cut(s)	458
NsbI	TGCGCA	1 cut(s)	147
PfeI	GAWTC	4 cut(s)	95, 110, 266, 326
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	223, 594
PspGI	CCWGG	2 cut(s)	223, 594
PspN4I	GGNNCC	2 cut(s)	300, 434
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	492, 530
RsaNI	GTAC	2 cut(s)	491, 529
SaqAI	TTAA	2 cut(s)	138, 688
Sau3AI	GATC	3 cut(s)	370, 392, 664
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	225, 596
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	2 cut(s)	576, 649
SfcI	CTRYAG	1 cut(s)	73
Sse9I	AATT	4 cut(s)	201, 382, 513, 555
SsiI	CCGC	2 cut(s)	295, 510
SspMI	CTAG	2 cut(s)	303, 507
StyD4I	CCNGG	2 cut(s)	223, 594
TaaI	ACNGT	3 cut(s)	136, 415, 490
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	373, 391
TasI	AATT	4 cut(s)	201, 382, 513, 555
TatI	WGTACW	2 cut(s)	490, 528
TfiI	GAWTC	4 cut(s)	95, 110, 266, 326
Tru1I	TTAA	2 cut(s)	138, 688
Tru9I	TTAA	2 cut(s)	138, 688
TseFI	GTSAC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	4 cut(s)	45, 102, 234, 279
XapI	RAATTY	1 cut(s)	201
XspI	CTAG	2 cut(s)	303, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.