Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Reverse (-)

42749822 .. 42752127

Gene Structure 2306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1315500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGAGACGTGATACTGTACGTGGAGGAGGATTCATGCTCGGCAGTTTCGCTCTGCAGGATTTGCCATGAAGAAGAATTCGGAAGCTCCGACCATAAGATCATGGAAGCTCCCTGTGCATGCTCTGGAACTGTCAAGTTTGCACACAGAGATTGCATACAGAGGTGGTGCAACGAGAAAGGCAATACGACCTGCGAAATATGTCTCCAGAGCTATCAACCAGGATACACAGCACCACCGCCAAAAAAGACGCATATAGATGACTCAACAGTAACAATTAGAGATAGCGTGCAGGTTCCGAGAAGAGAGCAAGAGGAAGAGGAGGGCGCAGGAAGCCCAAGATTAGCAATAGAAAATGGCTACTCTGCGTCTCAATGCTCGTCTGCGGTTGACAGAAGTGCATCTTATTGTCGATCTCTCGCTCTCCTTTTTACGGTGGTGTTGCTGGTGAGGCATCTCTTTGTGGTGATTACCGGTACCGACGAAGATTACCCCTTCACGCTTCTAACTGTGCTTATTCTAAGGTCTAGCGGGATTATCCTGCCAATGTACATATTATTTCGAACAATCACGGCCATCCAAAACAGCATCCACCACCAGTATCATCGATATCATCGTTATCAACAGCAAGACTCTGACTCTGAAGATGAGACCGATAGCGAAGACCTGGCTGACAATGAAGAAGCTCAACAACATCATATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

236

Amino Acids

26.55

Weight (kDa)

4.93

Isoelectric Point (pI)

68.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	19 - 68	2.1e-13	RING-variant domain
DUF3675	PF12428	74 - 190	2.9e-31	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	200, 283
Acc65I	GGTACC	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	476
AciI	CCGC	3 cut(s)	239, 386, 531
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	3 cut(s)	20, 478, 551
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgeI	ACCGGT	1 cut(s)	473
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	220, 666
AluBI	AGCT	4 cut(s)	87, 110, 213, 686
AluI	AGCT	4 cut(s)	87, 110, 213, 686
Alw26I	GTCTC	3 cut(s)	209, 375, 644
AoxI	GGCC	1 cut(s)	573
ApoI	RAATTY	1 cut(s)	77
AsiGI	ACCGGT	1 cut(s)	473
Asp718I	GGTACC	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	460, 478
AsuII	TTCGAA	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	669
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	1 cut(s)	588
BciT130I	CCWGG	2 cut(s)	222, 668
BciVI	GTATCC	1 cut(s)	218
BcoDI	GTCTC	3 cut(s)	209, 375, 644
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	55
BfuAI	ACCTGC	2 cut(s)	200, 283
BfuI	GTATCC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	222, 668
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	297, 478
BmrFI	CCNGG	2 cut(s)	222, 668
BmsI	GCATC	3 cut(s)	410, 463, 597
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	562
Bsa29I	ATCGAT	1 cut(s)	607
BsaAI	YACGTR	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	644
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	222, 668
BseCI	ATCGAT	1 cut(s)	607
BseGI	GGATG	2 cut(s)	576, 588
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	2 cut(s)	41, 335
BsgI	GTGCAG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	575
BshNI	GGYRCC	1 cut(s)	476
BshTI	ACCGGT	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	3 cut(s)	209, 375, 644
BsmBI	CGTCTC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	575
Bso31I	GGTCTC	1 cut(s)	644
Bsp119I	TTCGAA	1 cut(s)	562
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	99, 413
BspACI	CCGC	3 cut(s)	239, 386, 531
BspANI	GGCC	1 cut(s)	575
BspDI	ATCGAT	1 cut(s)	607
BspLI	GGNNCC	2 cut(s)	297, 478
BspMAI	CTGCAG	1 cut(s)	59
BspMI	ACCTGC	2 cut(s)	200, 283
BspT104I	TTCGAA	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	473
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	598
BssAI	RCCGGY	1 cut(s)	473
BssMI	GATC	2 cut(s)	99, 413
Bst2UI	CCWGG	2 cut(s)	222, 668
Bst4CI	ACNGT	5 cut(s)	18, 133, 271, 436, 511
Bst6I	CTCTTC	2 cut(s)	298, 312
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	562
BstC8I	GCNNGC	2 cut(s)	121, 290
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	576, 588
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	102, 416
BstMAI	GTCTC	3 cut(s)	209, 375, 644
BstMBI	GATC	2 cut(s)	99, 413
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 116, 333, 451
BstNI	CCWGG	2 cut(s)	222, 668
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	220, 666
BstSFI	CTRYAG	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	669
Bsu15I	ATCGAT	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	575
BsuTUI	ATCGAT	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	576, 588
BveI	ACCTGC	2 cut(s)	200, 283
Cac8I	GCNNGC	2 cut(s)	121, 290
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	473
ClaI	ATCGAT	1 cut(s)	607
CseI	GACGC	2 cut(s)	259, 357
Csp6I	GTAC	3 cut(s)	19, 477, 550
CspAI	ACCGGT	1 cut(s)	473
CviAII	CATG	4 cut(s)	36, 68, 103, 120
CviJI	RGCY	8 cut(s)	87, 110, 213, 336, 360, 575, 671, 686
CviKI_1	RGCY	8 cut(s)	87, 110, 213, 336, 360, 575, 671, 686
CviQI	GTAC	3 cut(s)	19, 477, 550
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	2 cut(s)	101, 415
DpnII	GATC	2 cut(s)	99, 413
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	298, 312
EarI	CTCTTC	2 cut(s)	298, 312
Eco31I	GGTCTC	1 cut(s)	644
Eco32I	GATATC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	663
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	220, 666
EcoRV	GATATC	1 cut(s)	611
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	4 cut(s)	39, 71, 106, 123
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FatI	CATG	4 cut(s)	35, 67, 102, 119
FauI	CCCGC	1 cut(s)	524
FauNDI	CATATG	1 cut(s)	699
FokI	GGATG	2 cut(s)	563, 575
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	575
HapII	CCGG	1 cut(s)	474
HgaI	GACGC	2 cut(s)	259, 357
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	4 cut(s)	39, 71, 106, 123
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	4 cut(s)	32, 263, 632, 638
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	2 cut(s)	460, 478
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	5 cut(s)	83, 91, 300, 637, 643
Hpy188III	TCNNGA	2 cut(s)	126, 208
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	5 cut(s)	18, 133, 271, 436, 511
HpyCH4IV	ACGT	2 cut(s)	9, 21
HpyCH4V	TGCA	7 cut(s)	57, 119, 143, 156, 171, 292, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 116, 333, 451
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	2 cut(s)	9, 21
Hsp92II	CATG	4 cut(s)	39, 71, 106, 123
HspAI	GCGC	1 cut(s)	327
KpnI	GGTACC	1 cut(s)	480
Kzo9I	GATC	2 cut(s)	99, 413
LmnI	GCTCC	2 cut(s)	92, 115
LweI	GCATC	3 cut(s)	410, 463, 597
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	2 cut(s)	9, 21
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	101, 415
MboI	GATC	2 cut(s)	99, 413
MboII	GAAGA	8 cut(s)	83, 86, 315, 329, 497, 656, 674, 692
MluCI	AATT	2 cut(s)	77, 276
MlyI	GAGTC	3 cut(s)	257, 626, 632
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	7 cut(s)	19, 22, 156, 307, 313, 316, 444
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	222, 668
MvaI	CCWGG	2 cut(s)	222, 668
MwoI	GCNNNNNNNGC	4 cut(s)	63, 116, 333, 451
NdeI	CATATG	1 cut(s)	699
NdeII	GATC	2 cut(s)	99, 413
NlaIII	CATG	4 cut(s)	39, 71, 106, 123
NlaIV	GGNNCC	2 cut(s)	297, 478
NmeAIII	GCCGAG	1 cut(s)	20
NspI	RCATGY	1 cut(s)	123
NspV	TTCGAA	1 cut(s)	562
PaeI	GCATGC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 613
PfeI	GAWTC	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	473
PleI	GAGTC	3 cut(s)	257, 626, 632
PpsI	GAGTC	3 cut(s)	257, 626, 632
Ppu21I	YACGTR	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	220, 666
PspGI	CCWGG	2 cut(s)	220, 666
PspN4I	GGNNCC	2 cut(s)	297, 478
PstI	CTGCAG	1 cut(s)	59
RsaI	GTAC	3 cut(s)	20, 478, 551
RsaNI	GTAC	3 cut(s)	19, 477, 550
RseI	CAYNNNNRTG	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	99, 413
SchI	GAGTC	3 cut(s)	257, 626, 632
ScrFI	CCNGG	2 cut(s)	222, 668
SfaNI	GCATC	3 cut(s)	410, 463, 597
SfcI	CTRYAG	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	258
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	2 cut(s)	77, 276
SsiI	CCGC	3 cut(s)	239, 386, 531
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	220, 666
TaaI	ACNGT	5 cut(s)	18, 133, 271, 436, 511
TaiI	ACGT	2 cut(s)	12, 24
TaqI	TCGA	3 cut(s)	412, 562, 607
TaqII	GACCGA	1 cut(s)	668
TasI	AATT	2 cut(s)	77, 276
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	24, 84, 693
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	123
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.