Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002268.1

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Reverse (-)

33459 .. 34688

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002268.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggatggttctaacaacacttactactattatgatgaaccagatagcgtgcgggttcctagaagaagagaggaagatgaggaatcagcaagccccagattagagagggtatgctcctctacagctgatcgaagtgccaatttttgtcgatcactcgctctcctttttacggtggttttgcttgtgaggcacctctttgtggtgcttactggtagtgacgaagaataccccttcgcccttcttactgtacttattctgagggctagcggaattatcctacctatgtatatattataccgaacaatcacagcaattcagaacagcatccatcaacaatatcaatatcattaccaggaggactccgatgatgatgatgatgatgagacctcaaacctcggagaagatgaccaccaccaaggagatgccgatcatcatcaacaaagtgcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

150

Amino Acids

17.28

Weight (kDa)

4.47

Isoelectric Point (pI)

62.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AciI	CCGC	2 cut(s)	52, 267
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	169, 199
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	377
AsuNHI	GCTAGC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	189
BccI	CCATC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	60, 264
BfmI	CTRYAG	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	353
BmiI	GGNNCC	2 cut(s)	57, 191
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	2 cut(s)	333, 412
BmtI	GCTAGC	1 cut(s)	267
BsaBI	GATNNNNATC	2 cut(s)	426, 432
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	394, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 199
Bse1I	ACTGG	1 cut(s)	214
Bse8I	GATNNNNATC	2 cut(s)	426, 432
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	394, 415
BseGI	GGATG	2 cut(s)	10, 324
BseJI	GATNNNNATC	2 cut(s)	426, 432
BseLI	CCNNNNNNNGG	2 cut(s)	169, 199
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	169, 199
BsmAI	GTCTC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	127, 149, 427
BspACI	CCGC	2 cut(s)	52, 267
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	57, 191
BspOI	GCTAGC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	394, 415
BssMI	GATC	3 cut(s)	127, 149, 427
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	172, 247
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	3 cut(s)	50, 91, 265
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	10, 324
BstKTI	GATC	3 cut(s)	130, 152, 430
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	3 cut(s)	127, 149, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	10, 324
Cac8I	GCNNGC	3 cut(s)	50, 91, 265
Csp6I	GTAC	1 cut(s)	248
CviJI	RGCY	3 cut(s)	93, 125, 263
CviKI_1	RGCY	3 cut(s)	93, 125, 263
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	3 cut(s)	129, 151, 429
DpnII	GATC	3 cut(s)	127, 149, 427
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	415
Eco31I	GGTCTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaiI	YATR	6 cut(s)	33, 112, 284, 288, 290, 295
FauI	CCCGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	17, 311
FspBI	CTAG	2 cut(s)	60, 264
HinfI	GANTC	2 cut(s)	83, 359
Hpy188I	TCNGA	4 cut(s)	258, 318, 364, 398
HpyAV	CCTTC	2 cut(s)	241, 248
HpyCH4III	ACNGT	2 cut(s)	172, 247
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	257
Kzo9I	GATC	3 cut(s)	127, 149, 427
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	5 cut(s)	54, 109, 195, 338, 365
LweI	GCATC	2 cut(s)	333, 412
MaeI	CTAG	2 cut(s)	60, 264
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	3 cut(s)	129, 151, 429
MboI	GATC	3 cut(s)	127, 149, 427
MboII	GAAGA	5 cut(s)	75, 78, 86, 233, 413
MluCI	AATT	3 cut(s)	139, 270, 312
MlyI	GAGTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	3 cut(s)	127, 149, 427
NheI	GCTAGC	1 cut(s)	263
NlaIV	GGNNCC	2 cut(s)	57, 191
NmuCI	GTSAC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	57, 191
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	451
Sau3AI	GATC	3 cut(s)	127, 149, 427
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	353
SetI	ASST	5 cut(s)	127, 195, 283, 389, 396
SfaNI	GCATC	2 cut(s)	333, 412
SfcI	CTRYAG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	139, 270, 312
SsiI	CCGC	2 cut(s)	52, 267
SspMI	CTAG	2 cut(s)	60, 264
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	172, 247
TaqI	TCGA	2 cut(s)	130, 148
TasI	AATT	3 cut(s)	139, 270, 312
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	51
XspI	CTAG	2 cut(s)	60, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.