Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Forward (+)

38425214 .. 38425817

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0346200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGAAATCATCAGCAGCAGCAGCAGGCAGGAAGAGGAAGAGTTCAAGTGTTTCGGACTCGGAAATAATAGAGGCAGCAAATCTGCTCATGCAACTCAGCGGTAGCTCTGATACGATTCACTACGACGCAGAAGAAGAAAGCGTTGGTAAAACAACGCCAACTACTCATCCCGATGATCATGATCAGGTGTCTTCTAATTCTGCCTTTAAATATAGAGTGTTTGAAGAGGAAGATGAAGATGAAGTGGGTTTCGGTAAGCGAATTAAGAAGAAACGATTTCGCTTGATTTCGGATCTGTACGAGCAGACGAAGCCTCTTAAAAATGGTGGTGTTGTAAATAGAAGGAAAAGGAGGATGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

121

Amino Acids

13.58

Weight (kDa)

8.86

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	48, 227
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
AlwI	GGATC	1 cut(s)	303
ApeKI	GCWGC	4 cut(s)	17, 20, 23, 77
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	29, 32, 35, 89
BccI	CCATC	1 cut(s)	352
BclI	TGATCA	2 cut(s)	178, 184
BisI	GCNGC	4 cut(s)	18, 21, 24, 78
BlsI	GCNGC	4 cut(s)	19, 22, 25, 79
BpiI	GAAGAC	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	183
BseGI	GGATG	2 cut(s)	169, 363
BseJI	GATNNNNATC	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	112
BseXI	GCAGC	4 cut(s)	29, 32, 35, 89
Bsp143I	GATC	3 cut(s)	178, 184, 295
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	181
BspPI	GGATC	1 cut(s)	303
BssMI	GATC	3 cut(s)	178, 184, 295
Bst6I	CTCTTC	3 cut(s)	29, 35, 222
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	169, 363
BstKTI	GATC	3 cut(s)	181, 187, 298
BstMBI	GATC	3 cut(s)	178, 184, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 313
BstV1I	GCAGC	4 cut(s)	29, 32, 35, 89
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	169, 363
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	1 cut(s)	181
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	2 cut(s)	91, 182
CviJI	RGCY	2 cut(s)	108, 316
CviKI_1	RGCY	2 cut(s)	108, 316
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	3 cut(s)	180, 186, 297
DpnII	GATC	3 cut(s)	178, 184, 295
DraI	TTTAAA	1 cut(s)	211
Eam1104I	CTCTTC	3 cut(s)	29, 35, 222
EarI	CTCTTC	3 cut(s)	29, 35, 222
FaeI	CATG	2 cut(s)	94, 185
FaiI	YATR	3 cut(s)	92, 183, 216
FatI	CATG	2 cut(s)	90, 181
FbaI	TGATCA	2 cut(s)	178, 184
Fnu4HI	GCNGC	4 cut(s)	18, 21, 24, 78
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	4 cut(s)	18, 21, 24, 78
GluI	GCNGC	4 cut(s)	18, 21, 24, 78
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	94, 185
HinfI	GANTC	2 cut(s)	59, 118
Hpy188I	TCNGA	4 cut(s)	58, 64, 112, 295
Hpy188III	TCNNGA	2 cut(s)	173, 182
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	339
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 313
HpyF3I	CTNAG	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	94, 185
Ksp22I	TGATCA	2 cut(s)	178, 184
Kzo9I	GATC	3 cut(s)	178, 184, 295
LpnPI	CCDG	3 cut(s)	12, 16, 173
Lsp1109I	GCAGC	4 cut(s)	29, 32, 35, 89
MalI	GATC	3 cut(s)	180, 186, 297
MboI	GATC	3 cut(s)	178, 184, 295
MboII	GAAGA	9 cut(s)	46, 52, 146, 149, 186, 239, 245, 251, 283
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	2 cut(s)	199, 264
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	5 cut(s)	30, 67, 223, 327, 348
MseI	TTAA	3 cut(s)	210, 267, 321
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	23, 313
NdeII	GATC	3 cut(s)	178, 184, 295
NlaIII	CATG	2 cut(s)	94, 185
PagI	TCATGA	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	19, 22, 25, 79
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	210, 267, 321
SatI	GCNGC	4 cut(s)	18, 21, 24, 78
Sau3AI	GATC	3 cut(s)	178, 184, 295
SchI	GAGTC	1 cut(s)	53
SetI	ASST	2 cut(s)	110, 192
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	199, 264
SsiI	CCGC	1 cut(s)	102
TasI	AATT	2 cut(s)	199, 264
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	210, 267, 321
Tru9I	TTAA	3 cut(s)	210, 267, 321
TseI	GCWGC	4 cut(s)	17, 20, 23, 77
TspDTI	ATGAA	2 cut(s)	252, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.