Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Reverse (-)

37188802 .. 37191389

Gene Structure 2588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1296100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAGACGTGATACTGTACGTGGAGGAGGATTTGAAAACATGCTCGGCAGTTTCGCTCTGCAGGATTTGCCATGAAGAAGAAACCGGAAGCTCCGATAAGACCATGGAAGCTCCCTGTGCATGCTCTGGAACTGTTAAGTTTGCTCACAGAGATTGCATACAGAGGTGGTGCAACGAGAAAGGCAATACAACCTGCGAAATATGTCTTCAGAGTTATGAACCAGGATACGCAGCACCACCGCCAAAGAAGACGCAGATAGACGACTCAGCAGTAACAATTAGAGACAGCGTGCAGGTTCCGAGAAGAGAGCTAGAGCAAGAGGAAGAGGAGGAGGAGGAGGGCGCAGGAAGCCCAAGATTCGCAATAGAAAATGGCTACCCTTCTTCTCAATGCTCGTATGCGGCTGACAGAAGTGCATCTTGTTGTCGATCTCTCGCTCTCCTTTTTACGGTGGTGTTGCTGGTGAGGCACCTCTTTGTGGTGCTTACCGGTTCCGACGAAGATTACCCCTTCACGCTTCTAACTGTGCTTATTATAAAGTCTAGTGGGATTATCCTGCCAATGTACATATTATTCCGAACAATCACAGCCATCCAAAACAGCATCCACCGCCAGTATCATCAATATCATCGTTATGAACAACAAGGCTCTGAAGATGAGACCGATAGCGAAGACCTGGCTGACAATGAAGAAGCTCAACAACATCATATAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

240

Amino Acids

26.9

Weight (kDa)

4.68

Isoelectric Point (pI)

67.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	21 - 69	2.1e-14	RING-variant domain
DUF3675	PF12428	75 - 196	2e-30	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
Acc36I	ACCTGC	2 cut(s)	203, 286
AccB1I	GGYRCC	1 cut(s)	471
AciI	CCGC	3 cut(s)	242, 404, 613
AcuI	CTGAAG	2 cut(s)	194, 675
AfaI	GTAC	2 cut(s)	20, 569
AfiI	CCNNNNNNNGG	2 cut(s)	451, 481
AgeI	ACCGGT	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	223, 678
AluBI	AGCT	4 cut(s)	93, 113, 313, 698
AluI	AGCT	4 cut(s)	93, 113, 313, 698
Alw26I	GTCTC	2 cut(s)	279, 656
ApeKI	GCWGC	1 cut(s)	233
AsiGI	ACCGGT	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	471
BbsI	GAAGAC	3 cut(s)	200, 257, 681
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	602
BciT130I	CCWGG	2 cut(s)	225, 680
BciVI	GTATCC	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	279, 656
BfaI	CTAG	2 cut(s)	314, 546
BfmI	CTRYAG	1 cut(s)	61
BfuAI	ACCTGC	2 cut(s)	203, 286
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	234, 405
BlsI	GCNGC	2 cut(s)	235, 406
Bme1390I	CCNGG	2 cut(s)	225, 680
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	3 cut(s)	300, 473, 496
BmrFI	CCNGG	2 cut(s)	225, 680
BmsI	GCATC	2 cut(s)	428, 615
BpiI	GAAGAC	3 cut(s)	200, 257, 681
BsaAI	YACGTR	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	2 cut(s)	86, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 481
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	225, 680
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	594, 606
BseLI	CCNNNNNNNGG	2 cut(s)	451, 481
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	5 cut(s)	41, 344, 347, 350, 353
BseXI	GCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	471
BshTI	ACCGGT	1 cut(s)	491
BsiSI	CCGG	2 cut(s)	87, 492
BslI	CCNNNNNNNGG	2 cut(s)	451, 481
BsmAI	GTCTC	2 cut(s)	279, 656
Bso31I	GGTCTC	1 cut(s)	656
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	1 cut(s)	431
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	3 cut(s)	242, 404, 613
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	3 cut(s)	300, 473, 496
BspMAI	CTGCAG	1 cut(s)	65
BspMI	ACCTGC	2 cut(s)	203, 286
BspT107I	GGYRCC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	656
BsrFI	RCCGGY	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	225, 680
Bst4CI	ACNGT	4 cut(s)	18, 136, 454, 529
Bst6I	CTCTTC	2 cut(s)	301, 321
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	567
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	124, 293
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	594, 606
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	1 cut(s)	434
BstMAI	GTCTC	2 cut(s)	279, 656
BstMBI	GATC	1 cut(s)	431
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 119, 351, 469, 612
BstNI	CCWGG	2 cut(s)	225, 680
BstNSI	RCATGY	2 cut(s)	45, 126
BstSCI	CCNGG	2 cut(s)	223, 678
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	3 cut(s)	200, 257, 681
BsuI	GTATCC	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	594, 606
BveI	ACCTGC	2 cut(s)	203, 286
Cac8I	GCNNGC	2 cut(s)	124, 293
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	491
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	19, 568
CspAI	ACCGGT	1 cut(s)	491
CviAII	CATG	4 cut(s)	42, 74, 106, 123
CviQI	GTAC	2 cut(s)	19, 568
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	1 cut(s)	433
DpnII	GATC	1 cut(s)	431
Eam1104I	CTCTTC	2 cut(s)	301, 321
EarI	CTCTTC	2 cut(s)	301, 321
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	194, 675
EcoRII	CCWGG	2 cut(s)	223, 678
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	4 cut(s)	45, 77, 109, 126
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FatI	CATG	4 cut(s)	41, 73, 105, 122
Fnu4HI	GCNGC	2 cut(s)	234, 405
FokI	GGATG	2 cut(s)	581, 593
Fsp4HI	GCNGC	2 cut(s)	234, 405
FspBI	CTAG	2 cut(s)	314, 546
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	2 cut(s)	234, 405
HapII	CCGG	2 cut(s)	87, 492
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	45, 77, 109, 126
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	2 cut(s)	266, 360
HpaII	CCGG	2 cut(s)	87, 492
HphI	GGTGA	1 cut(s)	478
Hpy188I	TCNGA	6 cut(s)	97, 213, 303, 499, 581, 655
Hpy188III	TCNNGA	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	2 cut(s)	393, 523
HpyCH4III	ACNGT	4 cut(s)	18, 136, 454, 529
HpyCH4IV	ACGT	2 cut(s)	9, 21
HpyCH4V	TGCA	6 cut(s)	63, 122, 159, 174, 295, 419
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 119, 351, 469, 612
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	2 cut(s)	9, 21
Hsp92II	CATG	4 cut(s)	45, 77, 109, 126
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	431
LmnI	GCTCC	2 cut(s)	98, 118
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	2 cut(s)	428, 615
MaeI	CTAG	2 cut(s)	314, 546
MaeII	ACGT	2 cut(s)	9, 21
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	433
MboI	GATC	1 cut(s)	431
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	522
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	636
MspI	CCGG	2 cut(s)	87, 492
MspR9I	CCNGG	2 cut(s)	225, 680
MvaI	CCWGG	2 cut(s)	225, 680
MwoI	GCNNNNNNNGC	5 cut(s)	69, 119, 351, 469, 612
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	431
NlaIII	CATG	4 cut(s)	45, 77, 109, 126
NlaIV	GGNNCC	3 cut(s)	300, 473, 496
NmeAIII	GCCGAG	1 cut(s)	26
NspI	RCATGY	2 cut(s)	45, 126
PaeI	GCATGC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	360
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	235, 406
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	22
PsiI	TTATAA	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	223, 678
PspGI	CCWGG	2 cut(s)	223, 678
PspN4I	GGNNCC	3 cut(s)	300, 473, 496
PstI	CTGCAG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	20, 569
RsaNI	GTAC	2 cut(s)	19, 568
RseI	CAYNNNNRTG	1 cut(s)	636
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	234, 405
Sau3AI	GATC	1 cut(s)	431
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	225, 680
SfaNI	GCATC	2 cut(s)	428, 615
SfcI	CTRYAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	636
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	3 cut(s)	242, 404, 613
SspMI	CTAG	2 cut(s)	314, 546
StyD4I	CCNGG	2 cut(s)	223, 678
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	18, 136, 454, 529
TaiI	ACGT	2 cut(s)	12, 24
TaqI	TCGA	1 cut(s)	430
TaqII	GACCGA	1 cut(s)	680
TasI	AATT	1 cut(s)	279
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	4 cut(s)	90, 234, 654, 705
XceI	RCATGY	2 cut(s)	45, 126
XspI	CTAG	2 cut(s)	314, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.