Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Reverse (-)

904032 .. 907643

Gene Structure 3612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03620.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAGCGTGGGAAAGGCGAGAAAAAGGCAACAAAGAGCCGCGATGGCAGCGGTCAAGTAGTTCCGCTCACTGAACCAGTGGTTACAGCTACGGGTATGGTTGGAACAAGATCATGGATAGGAGGGCTCTTCACACGCTCCAATAGACGTCAAGACAAGGCAGTCGACTACACTTTGTCTCCTCTTCAGGAGGAAAGACTTCAAAGGCTGCAAGATCGTATGGTTGTACCTTTCGACGAGACACGTCCTGATCATCAGGAATCACTTAAAGCATTGTGGAACGTCGCGTTTCCGAATGTTCATCTCACGGGTTTAGTAACAGAACAATGGAAAGAAATGGGATGGCAAGGTCCCAATCCATCTACCGATTTCAGGGGTTGCGGATTTATCGCTCTAGAAAATTTACTATTTTCTGCAAGAACTTATCCGGTTTGTTTCCGGAGGCTATTGTTAAAACAAAGAGGCGACCGGGCAAAGTGGGAGTACCCTTTTGCAGTGGCCGGAATCAACATCTCCTTCATGTTGATCCAAATGCTCGATTTACAAAATAATCCAAAGCCAAAATGTCTTCCAGGAATGAATTTCCTCAAACTCTTAGAAGAAGACGAGAGGGCATTCGATGTACTATACTGTATAGCTTTCGCGATGATGGATGCTCAATGGCTTGCAATGCACGCTTCTTACATGGAATTCAATGAAGTATTACAAGCAACTCGGAATCAGCTGGAGAGAGAGCTTTCTTTGGATGATATTCATCGGATTCAAGATCTTCCTGCCTACAATCTCTTGTTCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

265

Amino Acids

30.55

Weight (kDa)

7.67

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	37 - 203	2.1e-53	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AatII	GACGTC	1 cut(s)	151
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	3 cut(s)	42, 287, 644
AccIII	TCCGGA	1 cut(s)	438
AciI	CCGC	4 cut(s)	40, 51, 65, 381
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	3 cut(s)	400, 580, 689
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	3 cut(s)	228, 485, 624
AfiI	CCNNNNNNNGG	1 cut(s)	372
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	203, 694, 764
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	4 cut(s)	89, 638, 724, 736
AluI	AGCT	4 cut(s)	89, 638, 724, 736
Alw26I	GTCTC	2 cut(s)	183, 233
AlwI	GGATC	1 cut(s)	520
Aor13HI	TCCGGA	1 cut(s)	438
AoxI	GGCC	1 cut(s)	498
ApeKI	GCWGC	2 cut(s)	48, 208
ApoI	RAATTY	3 cut(s)	400, 580, 689
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	129
BbsI	GAAGAC	2 cut(s)	560, 609
BbvI	GCAGC	2 cut(s)	60, 195
BccI	CCATC	4 cut(s)	38, 336, 367, 643
BciT130I	CCWGG	1 cut(s)	573
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	183, 233
BfaI	CTAG	1 cut(s)	395
BglI	GCCNNNNNGGC	1 cut(s)	45
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	3 cut(s)	40, 49, 209
BlsI	GCNGC	3 cut(s)	41, 50, 210
Bme1390I	CCNGG	2 cut(s)	470, 573
Bme18I	GGWCC	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	470, 573
BmsI	GCATC	1 cut(s)	643
BpiI	GAAGAC	2 cut(s)	560, 609
BpmI	CTGGAG	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	753
BsaHI	GRCGYC	1 cut(s)	148
BsaWI	WCCGGW	2 cut(s)	427, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	753
BseAI	TCCGGA	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	573
BseGI	GGATG	3 cut(s)	347, 658, 751
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	675
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	60, 195
Bsh1236I	CGCG	3 cut(s)	42, 287, 644
Bsh1285I	CGRYCG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	469
BsiSI	CCGG	4 cut(s)	428, 439, 469, 501
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	183, 233
BsmFI	GGGAC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp13I	TCCGGA	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	110, 214, 250, 525, 766
Bsp68I	TCGCGA	1 cut(s)	644
BspACI	CCGC	4 cut(s)	40, 51, 65, 381
BspANI	GGCC	1 cut(s)	500
BspEI	TCCGGA	1 cut(s)	438
BspFNI	CGCG	3 cut(s)	42, 287, 644
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	520
BspQI	GCTCTTC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	77
BssMI	GATC	5 cut(s)	110, 214, 250, 525, 766
BssNI	GRCGYC	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	2 cut(s)	134, 189
BstACI	GRCGYC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	666, 675
BstDEI	CTNAG	1 cut(s)	595
BstF5I	GGATG	3 cut(s)	347, 658, 751
BstFNI	CGCG	3 cut(s)	42, 287, 644
BstKTI	GATC	5 cut(s)	113, 217, 253, 528, 769
BstMAI	GTCTC	2 cut(s)	183, 233
BstMBI	GATC	5 cut(s)	110, 214, 250, 525, 766
BstMCI	CGRYCG	1 cut(s)	469
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 48, 670, 674
BstNI	CCWGG	1 cut(s)	573
BstSCI	CCNGG	2 cut(s)	468, 571
BstUI	CGCG	3 cut(s)	42, 287, 644
BstV1I	GCAGC	2 cut(s)	60, 195
BstV2I	GAAGAC	2 cut(s)	560, 609
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BsuRI	GGCC	1 cut(s)	500
BtgZI	GCGATG	2 cut(s)	57, 659
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	347, 658, 751
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	3 cut(s)	69, 84, 501
BtuMI	TCGCGA	1 cut(s)	644
Cac8I	GCNNGC	2 cut(s)	666, 675
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	227, 484, 623
CviAII	CATG	3 cut(s)	114, 520, 685
CviQI	GTAC	3 cut(s)	227, 484, 623
DdeI	CTNAG	1 cut(s)	595
DpnI	GATC	5 cut(s)	112, 216, 252, 527, 768
DpnII	GATC	5 cut(s)	110, 214, 250, 525, 766
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	134, 189
EarI	CTCTTC	2 cut(s)	134, 189
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	3 cut(s)	117, 523, 688
FaiI	YATR	7 cut(s)	98, 115, 221, 521, 628, 635, 686
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	3 cut(s)	113, 519, 684
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	40, 49, 209
FokI	GGATG	3 cut(s)	354, 665, 758
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	3 cut(s)	40, 49, 209
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	3 cut(s)	40, 49, 209
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	1 cut(s)	500
HapII	CCGG	4 cut(s)	428, 439, 469, 501
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	117, 523, 688
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	260, 504, 718, 760
HpaII	CCGG	4 cut(s)	428, 439, 469, 501
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	294, 717, 759
Hpy188III	TCNNGA	8 cut(s)	152, 188, 248, 257, 395, 439, 643, 764
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	2 cut(s)	239, 287
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	3 cut(s)	148, 244, 282
HpyCH4V	TGCA	5 cut(s)	211, 416, 494, 668, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 48, 670, 674
HpyF3I	CTNAG	1 cut(s)	595
HpySE526I	ACGT	3 cut(s)	148, 244, 282
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	117, 523, 688
Kpn2I	TCCGGA	1 cut(s)	438
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	110, 214, 250, 525, 766
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	143
Lsp1109I	GCAGC	2 cut(s)	60, 195
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	3 cut(s)	148, 244, 282
MaeIII	GTNAC	2 cut(s)	82, 316
MalI	GATC	5 cut(s)	112, 216, 252, 527, 768
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	5 cut(s)	110, 214, 250, 525, 766
MboII	GAAGA	6 cut(s)	121, 176, 560, 611, 614, 761
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	3 cut(s)	400, 580, 689
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	7 cut(s)	116, 184, 192, 435, 455, 596, 603
MroI	TCCGGA	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	2 cut(s)	267, 452
MspA1I	CMGCKG	2 cut(s)	51, 724
MspI	CCGG	4 cut(s)	428, 439, 469, 501
MspR9I	CCNGG	2 cut(s)	470, 573
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	573
MvnI	CGCG	3 cut(s)	42, 287, 644
MwoI	GCNNNNNNNGC	4 cut(s)	45, 48, 670, 674
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	5 cut(s)	110, 214, 250, 525, 766
NlaIII	CATG	3 cut(s)	117, 523, 688
NlaIV	GGNNCC	1 cut(s)	352
NruI	TCGCGA	1 cut(s)	644
PciSI	GCTCTTC	1 cut(s)	134
PctI	GAATGC	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	260, 504, 718, 760
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	3 cut(s)	41, 50, 210
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	350
PspPPI	RGGWCCY	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	724
RruI	TCGCGA	1 cut(s)	644
RsaI	GTAC	3 cut(s)	228, 485, 624
RsaNI	GTAC	3 cut(s)	227, 484, 623
SalI	GTCGAC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	267, 452
SatI	GCNGC	3 cut(s)	40, 49, 209
Sau3AI	GATC	5 cut(s)	110, 214, 250, 525, 766
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	470, 573
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	9 cut(s)	91, 151, 232, 247, 285, 352, 640, 726, 738
SfaNI	GCATC	1 cut(s)	643
SinI	GGWCC	1 cut(s)	350
Sse9I	AATT	3 cut(s)	400, 580, 689
SsiI	CCGC	4 cut(s)	40, 51, 65, 381
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	468, 571
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	3 cut(s)	151, 247, 285
TaqI	TCGA	4 cut(s)	165, 234, 537, 618
TasI	AATT	3 cut(s)	400, 580, 689
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	4 cut(s)	260, 504, 718, 760
Tru1I	TTAA	2 cut(s)	267, 452
Tru9I	TTAA	2 cut(s)	267, 452
TscAI	CASTG	3 cut(s)	76, 84, 501
TseI	GCWGC	2 cut(s)	48, 208
TspDTI	ATGAA	6 cut(s)	17, 290, 508, 593, 711, 743
TspRI	CASTG	3 cut(s)	76, 84, 501
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	3 cut(s)	400, 580, 689
XbaI	TCTAGA	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	395
ZraI	GACGTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.