Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Reverse (-)

79297976 .. 79301478

Gene Structure 3503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG576600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCTTCTTCTTCTTTCTCTATCAATCTTGCTCCCTCCCATTTCTTGAAGTGGGCCCCGCCGTCAAACCACCACCATCATCATCACCAACAACACCACCACCCAAGCCAACATGTTTCCTCAGTTGCCATAGCAGTTAATGCTATGGTTGGACCACGATCATGGACAGGACTGTTTAGCCGCTCAAGCAACAAACGTAATGGGAAGTATGTTGACTACCCTTTGAGTCCTATGCAGGAGCAGAGACTTTTGGGGCTTCAAGAACGACTACAAGTACCTTTTGACGAGACTCGCCCTGATCATCAAGAAGCCTTGAAAGCACTCTGGTATGCTGCCTTTCCAGATGTTGCTATCAGTGGTTTGATCTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTCCTAACCCATCTACTGACTTTAGGAGTTGCGGTGTTATTGCCCTTGAGAACTTGCTTTTCTTCGCCAGAACTTATCCTGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCGTGAAGTTATTAGGAGAAGATGAAGCTGCTTTTGATGTACTATTCTGTATAGCTTTTGAAATGGTGGATGCTCAATGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGATGTTCTGCAAGCAACGCGGACACAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGAATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

280

Amino Acids

32.09

Weight (kDa)

6.63

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	86 - 250	2.1e-51	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	825
AasI	GACNNNNNNGTC	1 cut(s)	609
AccBSI	CCGCTC	1 cut(s)	183
AccII	CGCG	1 cut(s)	760
AccIII	TCCGGA	1 cut(s)	486
AciI	CCGC	4 cut(s)	59, 181, 429, 760
AclWI	GGATC	1 cut(s)	594
AcsI	RAATTY	1 cut(s)	625
AfaI	GTAC	3 cut(s)	276, 669, 836
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	6 cut(s)	49, 260, 316, 502, 578, 689
AluBI	AGCT	3 cut(s)	656, 683, 821
AluI	AGCT	3 cut(s)	656, 683, 821
Alw26I	GTCTC	3 cut(s)	238, 281, 508
AlwI	GGATC	1 cut(s)	594
Ama87I	CYCGRG	1 cut(s)	617
Aor13HI	TCCGGA	1 cut(s)	486
AoxI	GGCC	1 cut(s)	54
ApaI	GGGCCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	332, 656
ApoI	RAATTY	1 cut(s)	625
AspS9I	GGNCC	4 cut(s)	54, 55, 152, 398
AsuC2I	CCSGG	2 cut(s)	618, 619
AsuHPI	GGTGA	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	2 cut(s)	152, 398
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	605
BbvI	GCAGC	2 cut(s)	319, 643
BccI	CCATC	3 cut(s)	84, 379, 415
BceAI	ACGGC	1 cut(s)	46
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	618, 619
BcoDI	GTCTC	3 cut(s)	238, 281, 508
BisI	GCNGC	3 cut(s)	181, 333, 657
BlsI	GCNGC	3 cut(s)	182, 334, 658
Bme1390I	CCNGG	2 cut(s)	618, 619
Bme18I	GGWCC	2 cut(s)	152, 398
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	4 cut(s)	54, 55, 152, 398
BmiI	GGNNCC	2 cut(s)	56, 57
BmrFI	CCNGG	2 cut(s)	618, 619
BmsI	GCATC	3 cut(s)	488, 688, 731
BpiI	GAAGAC	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	169, 464
BpuMI	CCSGG	2 cut(s)	618, 619
BsaJI	CCNNGG	2 cut(s)	605, 617
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bse1I	ACTGG	1 cut(s)	838
Bse3DI	GCAATG	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	605, 617
BseGI	GGATG	2 cut(s)	703, 722
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	3 cut(s)	135, 360, 812
BseNI	ACTGG	1 cut(s)	838
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	319, 643
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	2 cut(s)	487, 618
BsmAI	GTCTC	3 cut(s)	238, 281, 508
BsmBI	CGTCTC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	617
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	158, 298, 363, 586
BspACI	CCGC	4 cut(s)	59, 181, 429, 760
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	3 cut(s)	134, 361, 811
BspEI	TCCGGA	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	56, 57
BspPI	GGATC	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	2 cut(s)	605, 617
BssMI	GATC	4 cut(s)	158, 298, 363, 586
BssT1I	CCWWGG	1 cut(s)	605
Bst4CI	ACNGT	2 cut(s)	174, 768
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	550, 711, 753
BstDEI	CTNAG	3 cut(s)	121, 369, 798
BstF5I	GGATG	2 cut(s)	703, 722
BstFNI	CGCG	1 cut(s)	760
BstKTI	GATC	4 cut(s)	161, 301, 366, 589
BstMAI	GTCTC	3 cut(s)	238, 281, 508
BstMBI	GATC	4 cut(s)	158, 298, 363, 586
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 186, 317, 719, 757
BstNSI	RCATGY	2 cut(s)	116, 733
BstSCI	CCNGG	2 cut(s)	616, 617
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	2 cut(s)	319, 643
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	586
BstXI	CCANNNNNNTGG	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	703, 722
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	550, 711, 753
Cfr13I	GGNCC	4 cut(s)	54, 55, 152, 398
Cfr9I	CCCGGG	1 cut(s)	617
Csp6I	GTAC	3 cut(s)	275, 668, 835
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	3 cut(s)	113, 162, 730
CviJI	RGCY	9 cut(s)	56, 108, 180, 256, 311, 656, 683, 709, 821
CviKI_1	RGCY	9 cut(s)	56, 108, 180, 256, 311, 656, 683, 709, 821
CviQI	GTAC	3 cut(s)	275, 668, 835
DdeI	CTNAG	3 cut(s)	121, 369, 798
DpnI	GATC	4 cut(s)	160, 300, 365, 588
DpnII	GATC	4 cut(s)	158, 298, 363, 586
DrdI	GACNNNNNNGTC	1 cut(s)	609
DseDI	GACNNNNNNGTC	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	152, 398
Eco88I	CYCGRG	1 cut(s)	617
EcoO109I	RGGNCCY	2 cut(s)	55, 398
EcoT14I	CCWWGG	1 cut(s)	605
EcoT22I	ATGCAT	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	605
Esp3I	CGTCTC	1 cut(s)	508
FaeI	CATG	3 cut(s)	116, 165, 733
FatI	CATG	3 cut(s)	112, 161, 729
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	181, 333, 657
FokI	GGATG	2 cut(s)	709, 710
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	181, 333, 657
GluI	GCNGC	3 cut(s)	181, 333, 657
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	487, 618
Hin1II	CATG	3 cut(s)	116, 165, 733
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	226, 289, 574
HpaII	CCGG	2 cut(s)	487, 618
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	370, 801
Hpy188III	TCNNGA	6 cut(s)	46, 260, 305, 341, 487, 631
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	2 cut(s)	174, 768
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	5 cut(s)	235, 479, 722, 733, 751
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 186, 317, 719, 757
HpyF3I	CTNAG	3 cut(s)	121, 369, 798
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	116, 165, 733
Kpn2I	TCCGGA	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	158, 298, 363, 586
LmnI	GCTCC	2 cut(s)	37, 238
Lsp1109I	GCAGC	2 cut(s)	319, 643
LweI	GCATC	3 cut(s)	488, 688, 731
MaeII	ACGT	1 cut(s)	196
MalI	GATC	4 cut(s)	160, 300, 365, 588
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	4 cut(s)	158, 298, 363, 586
MboII	GAAGA	5 cut(s)	3, 451, 605, 659, 803
MfeI	CAATTG	1 cut(s)	578
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	578, 625
MlyI	GAGTC	2 cut(s)	235, 283
MmeI	TCCRAC	2 cut(s)	130, 750
MnlI	CCTC	2 cut(s)	46, 130
Mph1103I	ATGCAT	1 cut(s)	724
MroI	TCCGGA	1 cut(s)	486
MseI	TTAA	2 cut(s)	138, 738
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	2 cut(s)	487, 618
MspR9I	CCNGG	2 cut(s)	618, 619
MunI	CAATTG	1 cut(s)	578
Mva1269I	GAATGC	1 cut(s)	724
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	5 cut(s)	140, 186, 317, 719, 757
NciI	CCSGG	2 cut(s)	618, 619
NdeII	GATC	4 cut(s)	158, 298, 363, 586
NlaIII	CATG	3 cut(s)	116, 165, 733
NlaIV	GGNNCC	2 cut(s)	56, 57
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	2 cut(s)	116, 733
PciI	ACATGT	1 cut(s)	112
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	1 cut(s)	574
PkrI	GCNGC	3 cut(s)	182, 334, 658
PleI	GAGTC	2 cut(s)	234, 283
PpsI	GAGTC	2 cut(s)	234, 283
PpuMI	RGGWCCY	1 cut(s)	398
PscI	ACATGT	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	825
Psp5II	RGGWCCY	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	56, 57
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	4 cut(s)	54, 55, 152, 398
PspPPI	RGGWCCY	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	3 cut(s)	276, 669, 836
RsaNI	GTAC	3 cut(s)	275, 668, 835
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	138, 738
SatI	GCNGC	3 cut(s)	181, 333, 657
Sau3AI	GATC	4 cut(s)	158, 298, 363, 586
Sau96I	GGNCC	4 cut(s)	54, 55, 152, 398
SchI	GAGTC	2 cut(s)	235, 283
ScrFI	CCNGG	2 cut(s)	618, 619
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	8 cut(s)	199, 280, 400, 511, 611, 658, 685, 823
SfaNI	GCATC	3 cut(s)	488, 688, 731
SinI	GGWCC	2 cut(s)	152, 398
SmaI	CCCGGG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	2 cut(s)	184, 443
SmoI	CTYRAG	2 cut(s)	184, 443
Sse9I	AATT	2 cut(s)	578, 625
SsiI	CCGC	4 cut(s)	59, 181, 429, 760
StyD4I	CCNGG	2 cut(s)	616, 617
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	174, 768
TaiI	ACGT	1 cut(s)	199
TasI	AATT	2 cut(s)	578, 625
TatI	WGTACW	1 cut(s)	667
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	2 cut(s)	138, 738
Tru9I	TTAA	2 cut(s)	138, 738
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	2 cut(s)	332, 656
TspDTI	ATGAA	2 cut(s)	666, 731
TspMI	CCCGGG	1 cut(s)	617
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	152, 398
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	2 cut(s)	116, 733
XmaI	CCCGGG	1 cut(s)	617
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.