Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Forward (+)

6528329 .. 6531719

Gene Structure 3391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1079100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGATTAAGGAAGCGTATACAATGCTTTCCTTCTTGCTCTTCCCTTCGCAAAGTTGATGAGGATGAGAATTATAGGAGACGGAAAAAGTGCGATGAAGAGTTGGAATGGCCACACAATTCAACTCATGTCAAACCGCAGTTAGCTCAATGTTTTATTAATGCTATGGTTGGACCACGATCATGGACAGGACTATTTACCCGCTCAAGTAACAAACGTAATGAGAAGCCAGATGACTACTCTTTGAGTCCTCTTCAGGAACAGAGACTTTTGAGGCTTCAAGCACGACTACAAGTACCTTTTGACGAGAATCGCCCTGATCATCAAGAAGCCTTGAAAGCATTGTGGCATGCTGCCTTTCCAGATGTTGCTCTGCGAGGTCTGATCTCCGAGCAATGGAAAGAGATGGGTTGGCAAGGTTGTAACCCCTCTACTGACTTCAGGGGCTGCGGTTTTATCTCCCTCGAGAACTTGCTTTTTTTCGCCAGGATTTATCCAGCATCTTTCCGTAGGTTATTGTTCAAGCGAGACGGGAATCGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAATATATCATTTATGTTGATCAAAATGCTGGATCTTTGCTCAGAAAAACCAAGGTGTCTTCCAGGAATAAATTTCGTGAAACTATTAGGAGAAGATGAAGCCGCCTTTGATGTACTGTACTGTATAGCTTTCGAAATGGTTGATGCTCAGTGGCTCGCAATGCATGCGTCCTACATGCAGTTTAATGAGGTTCTACAAGCAACAAGGACACAGTTGGAAAGAGAGTTGTCTTTAGAAGATACTCAAAGAATACATGATTTACCAGCTTACAATCTATTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

288

Amino Acids

33.65

Weight (kDa)

7.56

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	93 - 257	7.8e-52	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	4 cut(s)	137, 202, 450, 678
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	2 cut(s)	239, 424
AfaI	GTAC	4 cut(s)	297, 690, 695, 857
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	4 cut(s)	123, 281, 337, 523
AjnI	CCWGG	2 cut(s)	485, 637
AluBI	AGCT	3 cut(s)	146, 704, 842
AluI	AGCT	3 cut(s)	146, 704, 842
Alw26I	GTCTC	3 cut(s)	73, 259, 522
AlwI	GGATC	1 cut(s)	615
AlwNI	CAGNNNCTG	1 cut(s)	447
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	353, 447
ApoI	RAATTY	1 cut(s)	646
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	173
AsuII	TTCGAA	1 cut(s)	708
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	626
BbvI	GCAGC	2 cut(s)	340, 434
BccI	CCATC	1 cut(s)	400
BciT130I	CCWGG	2 cut(s)	487, 639
BclI	TGATCA	2 cut(s)	319, 594
BcoDI	GTCTC	3 cut(s)	73, 259, 522
BisI	GCNGC	3 cut(s)	354, 448, 678
BlsI	GCNGC	3 cut(s)	355, 449, 679
Bme1390I	CCNGG	2 cut(s)	487, 639
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	173
BmrFI	CCNGG	2 cut(s)	487, 639
BmsI	GCATC	2 cut(s)	509, 709
BpiI	GAAGAC	1 cut(s)	626
Bpu14I	TTCGAA	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	626
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	859
Bse3DI	GCAATG	2 cut(s)	401, 741
BseBI	CCWGG	2 cut(s)	487, 639
BseDI	CCNNGG	1 cut(s)	626
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	2 cut(s)	401, 741
BseMII	CTCAG	2 cut(s)	630, 737
BseNI	ACTGG	1 cut(s)	859
BseXI	GCAGC	2 cut(s)	340, 434
BshFI	GGCC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	3 cut(s)	73, 259, 522
BsmBI	CGTCTC	2 cut(s)	73, 522
BsnI	GGCC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	708
Bsp143I	GATC	5 cut(s)	179, 319, 384, 594, 607
BspACI	CCGC	4 cut(s)	137, 202, 450, 678
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	629, 736
BspPI	GGATC	1 cut(s)	615
BspQI	GCTCTTC	1 cut(s)	46
BspT104I	TTCGAA	1 cut(s)	708
BsrBI	CCGCTC	1 cut(s)	204
BsrDI	GCAATG	2 cut(s)	401, 741
BsrI	ACTGG	1 cut(s)	859
BssECI	CCNNGG	1 cut(s)	626
BssMI	GATC	5 cut(s)	179, 319, 384, 594, 607
BssNAI	GTATAC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	626
Bst1107I	GTATAC	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	487, 639
Bst4CI	ACNGT	3 cut(s)	693, 698, 789
Bst6I	CTCTTC	3 cut(s)	46, 93, 258
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstBI	TTCGAA	1 cut(s)	708
BstC8I	GCNNGC	4 cut(s)	351, 571, 732, 741
BstDEI	CTNAG	2 cut(s)	616, 723
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	5 cut(s)	182, 322, 387, 597, 610
BstMAI	GTCTC	3 cut(s)	73, 259, 522
BstMBI	GATC	5 cut(s)	179, 319, 384, 594, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 736, 740
BstNI	CCWGG	2 cut(s)	487, 639
BstNSI	RCATGY	3 cut(s)	353, 743, 754
BstSCI	CCNGG	2 cut(s)	485, 637
BstV1I	GCAGC	2 cut(s)	340, 434
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	1 cut(s)	607
BstXI	CCANNNNNNTGG	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	607
BstZ17I	GTATAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	731
Cac8I	GCNNGC	4 cut(s)	351, 571, 732, 741
CaiI	CAGNNNCTG	1 cut(s)	447
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	1 cut(s)	732
Csp6I	GTAC	4 cut(s)	296, 689, 694, 856
CviAII	CATG	6 cut(s)	128, 183, 350, 740, 751, 830
CviQI	GTAC	4 cut(s)	296, 689, 694, 856
DdeI	CTNAG	2 cut(s)	616, 723
DpnI	GATC	5 cut(s)	181, 321, 386, 596, 609
DpnII	GATC	5 cut(s)	179, 319, 384, 594, 607
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	3 cut(s)	46, 93, 258
EarI	CTCTTC	3 cut(s)	46, 93, 258
Eco130I	CCWWGG	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	239, 424
Eco88I	CYCGRG	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	485, 637
EcoT14I	CCWWGG	1 cut(s)	626
EcoT22I	ATGCAT	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	626
Esp3I	CGTCTC	2 cut(s)	73, 522
FaeI	CATG	6 cut(s)	131, 186, 353, 743, 754, 833
FatI	CATG	6 cut(s)	127, 182, 349, 739, 750, 829
FauI	CCCGC	1 cut(s)	209
FbaI	TGATCA	2 cut(s)	319, 594
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	3 cut(s)	354, 448, 678
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	354, 448, 678
GluI	GCNGC	3 cut(s)	354, 448, 678
HaeIII	GGCC	1 cut(s)	112
HgaI	GACGC	1 cut(s)	732
Hin1II	CATG	6 cut(s)	131, 186, 353, 743, 754, 833
HinfI	GANTC	3 cut(s)	247, 310, 535
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	3 cut(s)	384, 391, 619
Hpy188III	TCNNGA	5 cut(s)	257, 326, 362, 466, 652
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	42, 56
HpyCH4III	ACNGT	3 cut(s)	693, 698, 789
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	739, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 736, 740
HpyF3I	CTNAG	2 cut(s)	616, 723
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	6 cut(s)	131, 186, 353, 743, 754, 833
Ksp22I	TGATCA	2 cut(s)	319, 594
Kzo9I	GATC	5 cut(s)	179, 319, 384, 594, 607
LguI	GCTCTTC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	340, 434
LweI	GCATC	2 cut(s)	509, 709
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	2 cut(s)	209, 422
MalI	GATC	5 cut(s)	181, 321, 386, 596, 609
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	5 cut(s)	179, 319, 384, 594, 607
MboII	GAAGA	6 cut(s)	33, 110, 245, 626, 680, 824
MflI	RGATCY	1 cut(s)	607
MlsI	TGGCCA	1 cut(s)	112
MluCI	AATT	3 cut(s)	70, 118, 646
MluNI	TGGCCA	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	3 cut(s)	84, 151, 771
MnlI	CCTC	7 cut(s)	55, 261, 267, 371, 439, 473, 757
Mox20I	TGGCCA	1 cut(s)	112
Mph1103I	ATGCAT	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	112
MseI	TTAA	3 cut(s)	8, 159, 759
MslI	CAYNNNNRTG	1 cut(s)	181
Msp20I	TGGCCA	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	487, 639
MvaI	CCWGG	2 cut(s)	487, 639
MwoI	GCNNNNNNNGC	3 cut(s)	338, 736, 740
NdeII	GATC	5 cut(s)	179, 319, 384, 594, 607
NlaIII	CATG	6 cut(s)	131, 186, 353, 743, 754, 833
NsiI	ATGCAT	1 cut(s)	741
NspI	RCATGY	3 cut(s)	353, 743, 754
NspV	TTCGAA	1 cut(s)	708
PaeI	GCATGC	2 cut(s)	353, 743
PaeR7I	CTCGAG	1 cut(s)	464
PciSI	GCTCTTC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	310, 535
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	3 cut(s)	355, 449, 679
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	485, 637
PspGI	CCWGG	2 cut(s)	485, 637
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	4 cut(s)	297, 690, 695, 857
RsaNI	GTAC	4 cut(s)	296, 689, 694, 856
RseI	CAYNNNNRTG	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	8, 159, 759
SatI	GCNGC	3 cut(s)	354, 448, 678
Sau3AI	GATC	5 cut(s)	179, 319, 384, 594, 607
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	487, 639
SfaNI	GCATC	2 cut(s)	509, 709
Sfr274I	CTCGAG	1 cut(s)	464
SfuI	TTCGAA	1 cut(s)	708
SinI	GGWCC	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	205, 464
SmoI	CTYRAG	2 cut(s)	205, 464
SphI	GCATGC	2 cut(s)	353, 743
Sse9I	AATT	3 cut(s)	70, 118, 646
SsiI	CCGC	4 cut(s)	137, 202, 450, 678
StyD4I	CCNGG	2 cut(s)	485, 637
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	3 cut(s)	693, 698, 789
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	3 cut(s)	465, 538, 708
TasI	AATT	3 cut(s)	70, 118, 646
TatI	WGTACW	2 cut(s)	688, 693
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	2 cut(s)	310, 535
Tru1I	TTAA	3 cut(s)	8, 159, 759
Tru9I	TTAA	3 cut(s)	8, 159, 759
TscAI	CASTG	1 cut(s)	731
TseI	GCWGC	2 cut(s)	353, 447
TspDTI	ATGAA	2 cut(s)	111, 687
TspGWI	ACGGA	2 cut(s)	97, 497
TspRI	CASTG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	173
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	1 cut(s)	646
XceI	RCATGY	3 cut(s)	353, 743, 754
XhoI	CTCGAG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	19
Zsp2I	ATGCAT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.