Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Forward (+)

6566410 .. 6570269

Gene Structure 3860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1089700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCATTCTTCCTCCTCCTCCTCCTCCTCCTCTTCGTTCTGTATCATTCCTGCTCCCACCACCACCACTTTCTTCCAGCGGGCCCTGCCGTGACACCATCATCGCCAACAGAACCACCACCGCCAACATGTCTCCTCAGATGCCATAGCAGACTAGAGGTTGATGAGGATGAAAATTATAGGAGACGGAAAAAGTGCAATGAAGAGTTGGAATGGCCACACAATTCAACTCATGTCAAATCGCAGTTAACTCAATGTTTTATTAATGCTATGGTTGGACCACGATCATGGACAGGACTATTTACGCGGTCAAATAACAGACGAAATGACTCCTTAAGTCCTTTTCAGGAACAGAGACTTCTGAGGCTTCAAGCACGATTACAAGTACCTTTTGACGAGAATCGCCCTGATCATCAAGAAGCCTTGAAAGCATTGTGGCATGCTGCCTTTCCAGATGTTGCTCTGCAAGGTCTGATCTCCGACCAATGGAAAGAGATGGGTTGGCAAGGTTCTAACCCCTCTACCGACTTTAGGGGTTGCGGTTTTATCTCCCTCGAGAACTTGCTTTTTTACGCCAGGACTTATCCAGCATCTTTCCGTAGGTTATTGTTCAAGCGAGATGGAAATCGAGCAACTTGGGAATACCCGTTTGCTGTTGCTGGCATAAATATATCATTTATGTTGACTGAAATGCTGGATCTTTGCTCAGAAAAACCAAGGTGTCTTCCAGGAATAAATTTCGTGAAACTATTAGGAGAAGATGAAGCCGCCTTTGATGTACTGTATTGTATAGCTTTCGAAATGGTTGATGCTCAGTGGCTCGCAGTGAATGCGTCCTACATGCAGTTTAACGAGGTTCTACAAGCAACAAGGACGCAGTTGGAAAGGGAGCTGTCTTTGGAAGATACTCAAAGAATACATGATTTACCAGCTTACAATCTATTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

318

Amino Acids

36.76

Weight (kDa)

6.01

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	123 - 287	4.6e-51	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	307
AciI	CCGC	5 cut(s)	80, 122, 307, 540, 768
AclWI	GGATC	1 cut(s)	705
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	736
AfaI	GTAC	3 cut(s)	387, 780, 947
AfiI	CCNNNNNNNGG	2 cut(s)	486, 531
AflII	CTTAAG	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	228, 371, 427, 613
AjnI	CCWGG	2 cut(s)	575, 727
AluBI	AGCT	3 cut(s)	794, 892, 932
AluI	AGCT	3 cut(s)	794, 892, 932
Alw26I	GTCTC	3 cut(s)	137, 178, 349
AlwI	GGATC	1 cut(s)	705
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	2 cut(s)	82, 215
ApaI	GGGCCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	736
AseI	ATTAAT	1 cut(s)	264
AspS9I	GGNCC	3 cut(s)	82, 83, 278
AsuII	TTCGAA	1 cut(s)	798
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	3 cut(s)	106, 490, 614
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	577, 729
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	3 cut(s)	137, 178, 349
BfaI	CTAG	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	334
BisI	GCNGC	2 cut(s)	444, 768
BlsI	GCNGC	2 cut(s)	445, 769
Bme1390I	CCNGG	2 cut(s)	577, 729
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	3 cut(s)	82, 83, 278
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	577, 729
BmsI	GCATC	3 cut(s)	131, 599, 799
BpiI	GAAGAC	1 cut(s)	716
Bpu14I	TTCGAA	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 531
Bse1I	ACTGG	1 cut(s)	949
Bse3DI	GCAATG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	577, 729
BseDI	CCNNGG	1 cut(s)	716
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	2 cut(s)	486, 531
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	4 cut(s)	151, 353, 720, 827
BseNI	ACTGG	1 cut(s)	949
BseRI	GAGGAG	7 cut(s)	5, 8, 11, 14, 17, 20, 125
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	84, 217
BsiHKCI	CYCGRG	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	486, 531
BsmAI	GTCTC	3 cut(s)	137, 178, 349
BsmBI	CGTCTC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	2 cut(s)	84, 217
BsoBI	CYCGRG	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	798
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	284, 409, 474, 697
BspACI	CCGC	5 cut(s)	80, 122, 307, 540, 768
BspANI	GGCC	2 cut(s)	84, 217
BspCNI	CTCAG	4 cut(s)	150, 354, 719, 826
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	705
BspT104I	TTCGAA	1 cut(s)	798
BspTI	CTTAAG	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	949
BssECI	CCNNGG	1 cut(s)	716
BssMI	GATC	4 cut(s)	284, 409, 474, 697
BssT1I	CCWWGG	1 cut(s)	716
Bst2UI	CCWGG	2 cut(s)	577, 729
Bst4CI	ACNGT	1 cut(s)	783
Bst6I	CTCTTC	2 cut(s)	38, 198
BstAFI	CTTAAG	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstBI	TTCGAA	1 cut(s)	798
BstC8I	GCNNGC	4 cut(s)	82, 441, 661, 822
BstDEI	CTNAG	4 cut(s)	137, 362, 706, 813
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	307
BstKTI	GATC	4 cut(s)	287, 412, 477, 700
BstMAI	GTCTC	3 cut(s)	137, 178, 349
BstMBI	GATC	4 cut(s)	284, 409, 474, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 428, 830
BstNI	CCWGG	2 cut(s)	577, 729
BstNSI	RCATGY	3 cut(s)	132, 443, 844
BstSCI	CCNGG	2 cut(s)	575, 727
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	697
BstXI	CCANNNNNNTGG	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	697
BsuRI	GGCC	2 cut(s)	84, 217
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	2 cut(s)	821, 831
Cac8I	GCNNGC	4 cut(s)	82, 441, 661, 822
Cfr13I	GGNCC	3 cut(s)	82, 83, 278
CseI	GACGC	2 cut(s)	822, 883
Csp6I	GTAC	3 cut(s)	386, 779, 946
CviAII	CATG	6 cut(s)	129, 233, 288, 440, 841, 920
CviJI	RGCY	9 cut(s)	84, 217, 367, 422, 767, 794, 820, 892, 932
CviKI_1	RGCY	9 cut(s)	84, 217, 367, 422, 767, 794, 820, 892, 932
CviQI	GTAC	3 cut(s)	386, 779, 946
DdeI	CTNAG	4 cut(s)	137, 362, 706, 813
DpnI	GATC	4 cut(s)	286, 411, 476, 699
DpnII	GATC	4 cut(s)	284, 409, 474, 697
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	38, 198
EarI	CTCTTC	2 cut(s)	38, 198
Eco130I	CCWWGG	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	575, 727
EcoT14I	CCWWGG	1 cut(s)	716
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	716
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	6 cut(s)	132, 236, 291, 443, 844, 923
FatI	CATG	6 cut(s)	128, 232, 287, 439, 840, 919
FauI	CCCGC	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	444, 768
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	444, 768
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	2 cut(s)	444, 768
HaeIII	GGCC	2 cut(s)	84, 217
HgaI	GACGC	2 cut(s)	822, 883
Hin1II	CATG	6 cut(s)	132, 236, 291, 443, 844, 923
HincII	GTYRAC	2 cut(s)	249, 684
HindII	GTYRAC	2 cut(s)	249, 684
HinfI	GANTC	2 cut(s)	329, 400
HpaI	GTTAAC	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	249, 684
Hpy188I	TCNGA	5 cut(s)	140, 363, 474, 481, 709
Hpy188III	TCNNGA	5 cut(s)	347, 416, 452, 556, 742
Hpy8I	GTNNAC	2 cut(s)	249, 684
HpyCH4III	ACNGT	1 cut(s)	783
HpyCH4V	TGCA	3 cut(s)	198, 466, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 428, 830
HpyF3I	CTNAG	4 cut(s)	137, 362, 706, 813
Hsp92II	CATG	6 cut(s)	132, 236, 291, 443, 844, 923
Ksp22I	TGATCA	1 cut(s)	409
KspAI	GTTAAC	1 cut(s)	249
Kzo9I	GATC	4 cut(s)	284, 409, 474, 697
LmnI	GCTCC	2 cut(s)	59, 889
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	3 cut(s)	131, 599, 799
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	286, 411, 476, 699
MboI	GATC	4 cut(s)	284, 409, 474, 697
MboII	GAAGA	6 cut(s)	25, 65, 215, 716, 770, 914
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	217
MluCI	AATT	3 cut(s)	175, 223, 736
MluNI	TGGCCA	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	4 cut(s)	189, 256, 504, 861
Mox20I	TGGCCA	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	217
MseI	TTAA	4 cut(s)	248, 264, 335, 849
MslI	CAYNNNNRTG	1 cut(s)	286
Msp20I	TGGCCA	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	577, 729
Mva1269I	GAATGC	1 cut(s)	835
MvaI	CCWGG	2 cut(s)	577, 729
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	3 cut(s)	86, 428, 830
NdeII	GATC	4 cut(s)	284, 409, 474, 697
NlaIII	CATG	6 cut(s)	132, 236, 291, 443, 844, 923
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	3 cut(s)	132, 443, 844
NspV	TTCGAA	1 cut(s)	798
PaeI	GCATGC	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	554
PciI	ACATGT	1 cut(s)	128
PctI	GAATGC	1 cut(s)	835
PfeI	GAWTC	1 cut(s)	400
PfoI	TCCNGGA	1 cut(s)	727
PkrI	GCNGC	2 cut(s)	445, 769
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PscI	ACATGT	1 cut(s)	128
PshBI	ATTAAT	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	575, 727
PspGI	CCWGG	2 cut(s)	575, 727
PspN4I	GGNNCC	1 cut(s)	84
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	3 cut(s)	82, 83, 278
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	3 cut(s)	387, 780, 947
RsaNI	GTAC	3 cut(s)	386, 779, 946
RseI	CAYNNNNRTG	1 cut(s)	286
SaqAI	TTAA	4 cut(s)	248, 264, 335, 849
SatI	GCNGC	2 cut(s)	444, 768
Sau3AI	GATC	4 cut(s)	284, 409, 474, 697
Sau96I	GGNCC	3 cut(s)	82, 83, 278
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	577, 729
SduI	GDGCHC	1 cut(s)	86
SfaNI	GCATC	3 cut(s)	131, 599, 799
Sfr274I	CTCGAG	1 cut(s)	554
SfuI	TTCGAA	1 cut(s)	798
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	286
SmlI	CTYRAG	2 cut(s)	334, 554
SmoI	CTYRAG	2 cut(s)	334, 554
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	3 cut(s)	175, 223, 736
SsiI	CCGC	5 cut(s)	80, 122, 307, 540, 768
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	575, 727
StyI	CCWWGG	1 cut(s)	716
TaaI	ACNGT	1 cut(s)	783
TaqI	TCGA	3 cut(s)	555, 628, 798
TasI	AATT	3 cut(s)	175, 223, 736
TatI	WGTACW	1 cut(s)	778
TauI	GCSGC	1 cut(s)	770
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	4 cut(s)	248, 264, 335, 849
Tru9I	TTAA	4 cut(s)	248, 264, 335, 849
TscAI	CASTG	2 cut(s)	821, 831
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	186, 216, 777
TspGWI	ACGGA	2 cut(s)	202, 587
TspRI	CASTG	2 cut(s)	821, 831
Vha464I	CTTAAG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	736
XceI	RCATGY	3 cut(s)	132, 443, 844
XhoI	CTCGAG	1 cut(s)	554
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.