Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Reverse (-)

73926510 .. 73929363

Gene Structure 2854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G046650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGATTAAGGAGGCGCAGGAAATGCTTTCCTTCTTGCGCTTTTCTTCACCAAGTTGATGAGGATGAGATTTATTGGACCCAGAAGAGCAAAAGCAGTAAGGAGCAACGTGGTTCAACTCGTGTGATACCGCAGTCAGTTCAATGTTTTATTAATGCTATGGTTGGACCACGATCATGGACAGGACTGTTTAGCCGCTCAAGCAACAAACGTAATGGGAAGTATGTTGACTACCCTTTGAGTCCTATGCAGGAGCAGAGACTTTTGGGGCTTCAAGAACGACTACAAGTACCTTTTGACGAGACTCGCCCTGATCATCAAGAAGCCTTGAAAGCACTCTGGTATGCTGCCTTTCCAGATGTTGCTATCAGTGGTTTGATCTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTCCTAACCCATCTACTGACTTTAGGAGTTGCGGTGTTATTGCGCTTGAGAACTTGCTTTTCTTCGCCAGAACCTATCCTGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCGTGAAGTTATTAGGAGAAGATGAAGCTGCTTTTGATGTACTGTTCTGTATAGCTTTTGAAATGGTGGATGCTCAATGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGATGTTCTGCAAGCAACGCGGACGCAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGAATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

285

Amino Acids

33.08

Weight (kDa)

8.5

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	91 - 255	2.2e-51	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AasI	GACNNNNNNGTC	1 cut(s)	624
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	775
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	4 cut(s)	131, 196, 444, 775
AclWI	GGATC	1 cut(s)	609
AcsI	RAATTY	1 cut(s)	640
AfaI	GTAC	3 cut(s)	291, 684, 851
AgsI	TTSAA	7 cut(s)	117, 143, 275, 331, 517, 593, 704
AluBI	AGCT	3 cut(s)	671, 698, 836
AluI	AGCT	3 cut(s)	671, 698, 836
Alw26I	GTCTC	3 cut(s)	253, 296, 523
AlwI	GGATC	1 cut(s)	609
Ama87I	CYCGRG	1 cut(s)	632
Aor13HI	TCCGGA	1 cut(s)	501
ApeKI	GCWGC	2 cut(s)	347, 671
ApoI	RAATTY	1 cut(s)	640
AseI	ATTAAT	1 cut(s)	153
AspLEI	GCGC	3 cut(s)	18, 41, 457
AspS9I	GGNCC	3 cut(s)	78, 167, 413
AsuC2I	CCSGG	2 cut(s)	633, 634
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	3 cut(s)	78, 167, 413
BaeI	ACNNNNGTAYC	2 cut(s)	119, 152
BauI	CACGAG	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	620
BbvI	GCAGC	2 cut(s)	334, 658
BccI	CCATC	2 cut(s)	394, 430
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	2 cut(s)	633, 634
BcoDI	GTCTC	3 cut(s)	253, 296, 523
BisI	GCNGC	3 cut(s)	196, 348, 672
BlsI	GCNGC	3 cut(s)	197, 349, 673
Bme1390I	CCNGG	2 cut(s)	633, 634
Bme18I	GGWCC	3 cut(s)	78, 167, 413
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	3 cut(s)	78, 167, 413
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	633, 634
BmsI	GCATC	3 cut(s)	503, 703, 746
BpiI	GAAGAC	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	184, 479
BpuMI	CCSGG	2 cut(s)	633, 634
BsaJI	CCNNGG	2 cut(s)	620, 632
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bse1I	ACTGG	1 cut(s)	853
Bse3DI	GCAATG	1 cut(s)	395
BseAI	TCCGGA	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	620, 632
BseGI	GGATG	3 cut(s)	70, 718, 737
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	375, 827
BseNI	ACTGG	1 cut(s)	853
BseXI	GCAGC	2 cut(s)	334, 658
Bsh1236I	CGCG	1 cut(s)	775
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	2 cut(s)	502, 633
BsmAI	GTCTC	3 cut(s)	253, 296, 523
BsmBI	CGTCTC	1 cut(s)	523
BsmI	GAATGC	1 cut(s)	739
BsoBI	CYCGRG	1 cut(s)	632
Bsp13I	TCCGGA	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	173, 313, 378, 601
BspACI	CCGC	4 cut(s)	131, 196, 444, 775
BspCNI	CTCAG	2 cut(s)	376, 826
BspEI	TCCGGA	1 cut(s)	501
BspFNI	CGCG	1 cut(s)	775
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	609
BspQI	GCTCTTC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	2 cut(s)	620, 632
BssMI	GATC	4 cut(s)	173, 313, 378, 601
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	620
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	189, 687
Bst6I	CTCTTC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	3 cut(s)	565, 726, 768
BstDEI	CTNAG	2 cut(s)	384, 813
BstF5I	GGATG	3 cut(s)	70, 718, 737
BstFNI	CGCG	1 cut(s)	775
BstHHI	GCGC	3 cut(s)	18, 41, 457
BstKTI	GATC	4 cut(s)	176, 316, 381, 604
BstMAI	GTCTC	3 cut(s)	253, 296, 523
BstMBI	GATC	4 cut(s)	173, 313, 378, 601
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 201, 332, 734, 772
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	2 cut(s)	631, 632
BstUI	CGCG	1 cut(s)	775
BstV1I	GCAGC	2 cut(s)	334, 658
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	70, 718, 737
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	565, 726, 768
CfoI	GCGC	3 cut(s)	18, 41, 457
Cfr13I	GGNCC	3 cut(s)	78, 167, 413
Cfr9I	CCCGGG	1 cut(s)	632
CseI	GACGC	1 cut(s)	787
Csp6I	GTAC	3 cut(s)	290, 683, 850
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	2 cut(s)	177, 745
CviJI	RGCY	7 cut(s)	195, 271, 326, 671, 698, 724, 836
CviKI_1	RGCY	7 cut(s)	195, 271, 326, 671, 698, 724, 836
CviQI	GTAC	3 cut(s)	290, 683, 850
DdeI	CTNAG	2 cut(s)	384, 813
DpnI	GATC	4 cut(s)	175, 315, 380, 603
DpnII	GATC	4 cut(s)	173, 313, 378, 601
DrdI	GACNNNNNNGTC	1 cut(s)	624
DseDI	GACNNNNNNGTC	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	620
Eco47I	GGWCC	3 cut(s)	78, 167, 413
Eco88I	CYCGRG	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	739
ErhI	CCWWGG	1 cut(s)	620
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	2 cut(s)	180, 748
FatI	CATG	2 cut(s)	176, 744
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	196, 348, 672
FokI	GGATG	3 cut(s)	77, 724, 725
Fsp4HI	GCNGC	3 cut(s)	196, 348, 672
GlaI	GCGC	3 cut(s)	17, 40, 456
GluI	GCNGC	3 cut(s)	196, 348, 672
HapII	CCGG	2 cut(s)	502, 633
HgaI	GACGC	1 cut(s)	787
HhaI	GCGC	3 cut(s)	18, 41, 457
Hin1II	CATG	2 cut(s)	180, 748
Hin6I	GCGC	3 cut(s)	16, 39, 455
HinP1I	GCGC	3 cut(s)	16, 39, 455
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	241, 304, 589
HpaII	CCGG	2 cut(s)	502, 633
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	385, 816
Hpy188III	TCNNGA	5 cut(s)	275, 320, 356, 502, 646
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	2 cut(s)	189, 687
HpyCH4IV	ACGT	2 cut(s)	109, 211
HpyCH4V	TGCA	5 cut(s)	250, 494, 737, 748, 766
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 201, 332, 734, 772
HpyF3I	CTNAG	2 cut(s)	384, 813
HpySE526I	ACGT	2 cut(s)	109, 211
Hsp92II	CATG	2 cut(s)	180, 748
HspAI	GCGC	3 cut(s)	16, 39, 455
Kpn2I	TCCGGA	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	173, 313, 378, 601
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	103, 253
Lsp1109I	GCAGC	2 cut(s)	334, 658
LweI	GCATC	3 cut(s)	503, 703, 746
MaeII	ACGT	2 cut(s)	109, 211
MalI	GATC	4 cut(s)	175, 315, 380, 603
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	4 cut(s)	173, 313, 378, 601
MboII	GAAGA	6 cut(s)	38, 97, 466, 620, 674, 818
MfeI	CAATTG	1 cut(s)	593
MflI	RGATCY	1 cut(s)	601
MluCI	AATT	2 cut(s)	593, 640
MlyI	GAGTC	2 cut(s)	250, 298
MmeI	TCCRAC	2 cut(s)	145, 765
MnlI	CCTC	2 cut(s)	6, 55
Mph1103I	ATGCAT	1 cut(s)	739
MroI	TCCGGA	1 cut(s)	501
MseI	TTAA	3 cut(s)	8, 153, 753
MslI	CAYNNNNRTG	1 cut(s)	175
MspI	CCGG	2 cut(s)	502, 633
MspR9I	CCNGG	2 cut(s)	633, 634
MunI	CAATTG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	739
MvnI	CGCG	1 cut(s)	775
MwoI	GCNNNNNNNGC	5 cut(s)	24, 201, 332, 734, 772
NciI	CCSGG	2 cut(s)	633, 634
NdeII	GATC	4 cut(s)	173, 313, 378, 601
NlaIII	CATG	2 cut(s)	180, 748
NlaIV	GGNNCC	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	739
NspI	RCATGY	1 cut(s)	748
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	739
PfeI	GAWTC	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	197, 349, 673
PleI	GAGTC	2 cut(s)	249, 298
PpsI	GAGTC	2 cut(s)	249, 298
PpuMI	RGGWCCY	1 cut(s)	413
PshBI	ATTAAT	1 cut(s)	153
PsiI	TTATAA	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	3 cut(s)	78, 167, 413
PspPPI	RGGWCCY	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	3 cut(s)	291, 684, 851
RsaNI	GTAC	3 cut(s)	290, 683, 850
RseI	CAYNNNNRTG	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	8, 153, 753
SatI	GCNGC	3 cut(s)	196, 348, 672
Sau3AI	GATC	4 cut(s)	173, 313, 378, 601
Sau96I	GGNCC	3 cut(s)	78, 167, 413
SchI	GAGTC	2 cut(s)	250, 298
ScrFI	CCNGG	2 cut(s)	633, 634
SfaNI	GCATC	3 cut(s)	503, 703, 746
SinI	GGWCC	3 cut(s)	78, 167, 413
SmaI	CCCGGG	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	199, 458
SmoI	CTYRAG	2 cut(s)	199, 458
Sse9I	AATT	2 cut(s)	593, 640
SsiI	CCGC	4 cut(s)	131, 196, 444, 775
StyD4I	CCNGG	2 cut(s)	631, 632
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	2 cut(s)	189, 687
TaiI	ACGT	2 cut(s)	112, 214
TasI	AATT	2 cut(s)	593, 640
TatI	WGTACW	1 cut(s)	682
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	3 cut(s)	8, 153, 753
Tru9I	TTAA	3 cut(s)	8, 153, 753
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	2 cut(s)	347, 671
TspDTI	ATGAA	2 cut(s)	681, 746
TspMI	CCCGGG	1 cut(s)	632
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	3 cut(s)	78, 167, 413
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	1 cut(s)	748
XmaI	CCCGGG	1 cut(s)	632
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.