Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Reverse (-)

34619128 .. 34622951

Gene Structure 3824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45080.t12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTTGGACCACGATCATGGACAGGACTCTTTAGCCGCTCAAGACGTAGTGAGAAGTATGCTGAGTACCCTTTGAGTCCTATGCAGGAGCTGAGACTTTTGAGGCTTCAAGAACGACTACAAGTACCTTTTGACGTGACTCGCCCTGATCATCGAGAAGCCTTGAAAGCATTCTGGCATGCTGCCTTTCCAGATGTTGCTCTCAGTGGTTTGATCTCTGAGCAATGGAAAGAGTTGGGTTGGCAAGGTCCTAACCCATCAACTGACTTTAGGAGTTGCGGTGTTATTGCCCTTGAGAACTTGATTTTCTTTGCCAGAACTTATCCTGCATCTTTCCGAAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACCTGGGAATACCCATTTGCTGTTGCTGGCATAAACATTTCATTTATGTTGATTCAGTTGTTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCGTGAAATTATTAGGAGAAGATGAAGCTGCTTTTGATGTACTATTCTGTATAGCTTTCGAAATGGTGGATGCTCAATGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGATGTTCTGCAAGCAACGCGTACGCAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGGATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

231

Amino Acids

26.68

Weight (kDa)

6.18

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	91 - 232	1.9e-38	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	675
AasI	GACNNNNNNGTC	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	610
AciI	CCGC	2 cut(s)	37, 279
AclWI	GGATC	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	475
AfaI	GTAC	5 cut(s)	68, 126, 519, 613, 686
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	3 cut(s)	110, 166, 352
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	91, 506, 533, 671
AluI	AGCT	4 cut(s)	91, 506, 533, 671
Alw26I	GTCTC	2 cut(s)	88, 358
AlwI	GGATC	1 cut(s)	444
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	467
ApeKI	GCWGC	2 cut(s)	182, 506
ApoI	RAATTY	1 cut(s)	475
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	8, 248
AsuC2I	CCSGG	2 cut(s)	468, 469
AsuII	TTCGAA	1 cut(s)	537
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	8, 248
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	169, 493
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	376
BciVI	GTATCC	1 cut(s)	648
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	468, 469
BcoDI	GTCTC	2 cut(s)	88, 358
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	3 cut(s)	37, 183, 507
BlsI	GCNGC	3 cut(s)	38, 184, 508
Bme1390I	CCNGG	3 cut(s)	376, 468, 469
Bme18I	GGWCC	2 cut(s)	8, 248
BmeT110I	CYCGRG	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	8, 248
BmrFI	CCNGG	3 cut(s)	376, 468, 469
BmsI	GCATC	3 cut(s)	338, 538, 581
BpiI	GAAGAC	1 cut(s)	455
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	25, 314
BpuMI	CCSGG	2 cut(s)	468, 469
BsaJI	CCNNGG	3 cut(s)	375, 455, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bse1I	ACTGG	1 cut(s)	688
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	375, 455, 467
BseGI	GGATG	2 cut(s)	553, 572
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	5 cut(s)	54, 83, 210, 217, 662
BseNI	ACTGG	1 cut(s)	688
BseXI	GCAGC	2 cut(s)	169, 493
Bsh1236I	CGCG	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	468
BsiWI	CGTACG	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	88, 358
BsmBI	CGTCTC	1 cut(s)	358
BsmI	GAATGC	2 cut(s)	170, 574
BsoBI	CYCGRG	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	14, 148, 213, 436
BspACI	CCGC	2 cut(s)	37, 279
BspCNI	CTCAG	5 cut(s)	55, 84, 211, 216, 661
BspFNI	CGCG	1 cut(s)	610
BspPI	GGATC	1 cut(s)	444
BspT104I	TTCGAA	1 cut(s)	537
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	3 cut(s)	375, 455, 467
BssMI	GATC	4 cut(s)	14, 148, 213, 436
BssT1I	CCWWGG	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	4 cut(s)	180, 400, 561, 603
BstDEI	CTNAG	5 cut(s)	63, 92, 203, 219, 648
BstF5I	GGATG	2 cut(s)	553, 572
BstFNI	CGCG	1 cut(s)	610
BstKTI	GATC	4 cut(s)	17, 151, 216, 439
BstMAI	GTCTC	2 cut(s)	88, 358
BstMBI	GATC	4 cut(s)	14, 148, 213, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 569, 607
BstNI	CCWGG	1 cut(s)	376
BstNSI	RCATGY	2 cut(s)	182, 583
BstSCI	CCNGG	3 cut(s)	374, 466, 467
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	169, 493
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	436
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	648
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	553, 572
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	4 cut(s)	180, 400, 561, 603
CaiI	CAGNNNCTG	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	8, 248
Cfr9I	CCCGGG	1 cut(s)	467
Csp6I	GTAC	5 cut(s)	67, 125, 518, 612, 685
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	3 cut(s)	18, 179, 580
CviJI	RGCY	8 cut(s)	36, 91, 106, 161, 506, 533, 559, 671
CviKI_1	RGCY	8 cut(s)	36, 91, 106, 161, 506, 533, 559, 671
CviQI	GTAC	5 cut(s)	67, 125, 518, 612, 685
DdeI	CTNAG	5 cut(s)	63, 92, 203, 219, 648
DpnI	GATC	4 cut(s)	16, 150, 215, 438
DpnII	GATC	4 cut(s)	14, 148, 213, 436
DrdI	GACNNNNNNGTC	1 cut(s)	459
DseDI	GACNNNNNNGTC	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	8, 248
Eco88I	CYCGRG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	455
EcoT22I	ATGCAT	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	3 cut(s)	21, 182, 583
FatI	CATG	3 cut(s)	17, 178, 579
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	37, 183, 507
FokI	GGATG	2 cut(s)	559, 560
Fsp4HI	GCNGC	3 cut(s)	37, 183, 507
GluI	GCNGC	3 cut(s)	37, 183, 507
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	3 cut(s)	21, 182, 583
HinfI	GANTC	4 cut(s)	27, 76, 139, 424
HpaII	CCGG	1 cut(s)	468
Hpy188I	TCNGA	3 cut(s)	220, 338, 651
Hpy188III	TCNNGA	5 cut(s)	42, 110, 155, 191, 481
HpyCH4IV	ACGT	2 cut(s)	46, 135
HpyCH4V	TGCA	5 cut(s)	85, 329, 572, 583, 601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 569, 607
HpyF3I	CTNAG	5 cut(s)	63, 92, 203, 219, 648
HpySE526I	ACGT	2 cut(s)	46, 135
Hsp92II	CATG	3 cut(s)	21, 182, 583
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	14, 148, 213, 436
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	169, 493
LweI	GCATC	3 cut(s)	338, 538, 581
MaeII	ACGT	2 cut(s)	46, 135
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	4 cut(s)	16, 150, 215, 438
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	4 cut(s)	14, 148, 213, 436
MboII	GAAGA	4 cut(s)	351, 455, 509, 653
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	2 cut(s)	475, 485
MluI	ACGCGT	1 cut(s)	608
MlyI	GAGTC	3 cut(s)	21, 85, 133
MmeI	TCCRAC	2 cut(s)	414, 600
MnlI	CCTC	2 cut(s)	96, 645
Mph1103I	ATGCAT	1 cut(s)	574
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	16
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	3 cut(s)	376, 468, 469
Mva1269I	GAATGC	2 cut(s)	170, 574
MvaI	CCWGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	3 cut(s)	167, 569, 607
NciI	CCSGG	2 cut(s)	468, 469
NdeII	GATC	4 cut(s)	14, 148, 213, 436
NlaIII	CATG	3 cut(s)	21, 182, 583
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	2 cut(s)	182, 583
NspV	TTCGAA	1 cut(s)	537
PaeI	GCATGC	1 cut(s)	182
PctI	GAATGC	2 cut(s)	170, 574
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	424
Pfl23II	CGTACG	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	38, 184, 508
PleI	GAGTC	3 cut(s)	21, 84, 133
PpsI	GAGTC	3 cut(s)	21, 84, 133
PpuMI	RGGWCCY	1 cut(s)	248
PsiI	TTATAA	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspLI	CGTACG	1 cut(s)	611
PspPI	GGNCC	2 cut(s)	8, 248
PspPPI	RGGWCCY	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	5 cut(s)	68, 126, 519, 613, 686
RsaNI	GTAC	5 cut(s)	67, 125, 518, 612, 685
RseI	CAYNNNNRTG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	3 cut(s)	37, 183, 507
Sau3AI	GATC	4 cut(s)	14, 148, 213, 436
Sau96I	GGNCC	2 cut(s)	8, 248
SchI	GAGTC	3 cut(s)	21, 85, 133
ScrFI	CCNGG	3 cut(s)	376, 468, 469
SfaNI	GCATC	3 cut(s)	338, 538, 581
SfuI	TTCGAA	1 cut(s)	537
SinI	GGWCC	2 cut(s)	8, 248
SmaI	CCCGGG	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	2 cut(s)	40, 293
SmoI	CTYRAG	2 cut(s)	40, 293
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	2 cut(s)	475, 485
SsiI	CCGC	2 cut(s)	37, 279
StyD4I	CCNGG	3 cut(s)	374, 466, 467
StyI	CCWWGG	1 cut(s)	455
TaiI	ACGT	2 cut(s)	49, 138
TaqI	TCGA	2 cut(s)	154, 537
TasI	AATT	2 cut(s)	475, 485
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	182, 506
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	402, 516, 581
TspMI	CCCGGG	1 cut(s)	467
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	8, 248
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	2 cut(s)	182, 583
XmaI	CCCGGG	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.