Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Reverse (-)

78210267 .. 78212294

Gene Structure 2028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTTGGACCACGATCATGGACAGGACTGTTTAGCCGCTCAAGCAACAAACGTAATGGGAAGTATGTTGACTACCCTTTGAGTCCTATGCAGAGACTTTTGGGGCTTCAAGAACGACTACAAGTACCTTTTGACGAGACTCGCCCTGATCATCAAGAAGCCTTGAAAGCACTCTGGTATGCTGCCTTTCCAGATGTTGCTATCAGTGGTTTGATCTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTCCTAACCCATCTACTGACTTTAGTTGCGGTGTTATTGCCCTTGAGAACTTGCTTTTCTTCGCCAGAACTTATCCTGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCGTGAAGTTATTAGGAGAAGATGAAGCTGCTTTTGATGTACTATTCTGTATAGCTTTTGAAATGGTGGATGCTCAATGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGATGTTCTGCAAGCAACGCGGACACAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGAATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

229

Amino Acids

26.33

Weight (kDa)

5.31

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	36 - 199	8.1e-49	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AasI	GACNNNNNNGTC	1 cut(s)	456
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	607
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	3 cut(s)	37, 276, 607
AclWI	GGATC	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	3 cut(s)	126, 516, 683
AgsI	TTSAA	5 cut(s)	110, 166, 349, 425, 536
AluBI	AGCT	3 cut(s)	503, 530, 668
AluI	AGCT	3 cut(s)	503, 530, 668
Alw26I	GTCTC	3 cut(s)	88, 131, 355
AlwI	GGATC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	182, 503
ApoI	RAATTY	1 cut(s)	472
AspS9I	GGNCC	2 cut(s)	8, 248
AsuC2I	CCSGG	2 cut(s)	465, 466
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	2 cut(s)	8, 248
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	169, 490
BccI	CCATC	2 cut(s)	229, 265
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	465, 466
BcoDI	GTCTC	3 cut(s)	88, 131, 355
BisI	GCNGC	3 cut(s)	37, 183, 504
BlsI	GCNGC	3 cut(s)	38, 184, 505
Bme1390I	CCNGG	2 cut(s)	465, 466
Bme18I	GGWCC	2 cut(s)	8, 248
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	8, 248
BmrFI	CCNGG	2 cut(s)	465, 466
BmsI	GCATC	3 cut(s)	335, 535, 578
BpiI	GAAGAC	1 cut(s)	452
BpuEI	CTTGAG	2 cut(s)	25, 311
BpuMI	CCSGG	2 cut(s)	465, 466
BsaJI	CCNNGG	2 cut(s)	452, 464
BsaWI	WCCGGW	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	230
BseAI	TCCGGA	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	452, 464
BseGI	GGATG	2 cut(s)	550, 569
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	210, 659
BseNI	ACTGG	1 cut(s)	685
BseXI	GCAGC	2 cut(s)	169, 490
Bsh1236I	CGCG	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	334, 465
BsmAI	GTCTC	3 cut(s)	88, 131, 355
BsmBI	CGTCTC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	571
BsoBI	CYCGRG	1 cut(s)	464
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	14, 148, 213, 433
BspACI	CCGC	3 cut(s)	37, 276, 607
BspCNI	CTCAG	2 cut(s)	211, 658
BspEI	TCCGGA	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	607
BspPI	GGATC	1 cut(s)	441
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	2 cut(s)	452, 464
BssMI	GATC	4 cut(s)	14, 148, 213, 433
BssT1I	CCWWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	30, 615
BstC8I	GCNNGC	3 cut(s)	397, 558, 600
BstDEI	CTNAG	2 cut(s)	219, 645
BstF5I	GGATG	2 cut(s)	550, 569
BstFNI	CGCG	1 cut(s)	607
BstKTI	GATC	4 cut(s)	17, 151, 216, 436
BstMAI	GTCTC	3 cut(s)	88, 131, 355
BstMBI	GATC	4 cut(s)	14, 148, 213, 433
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 167, 566, 604
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	2 cut(s)	463, 464
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	2 cut(s)	169, 490
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	550, 569
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	397, 558, 600
Cfr13I	GGNCC	2 cut(s)	8, 248
Cfr9I	CCCGGG	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	125, 515, 682
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	2 cut(s)	18, 577
CviJI	RGCY	7 cut(s)	36, 106, 161, 503, 530, 556, 668
CviKI_1	RGCY	7 cut(s)	36, 106, 161, 503, 530, 556, 668
CviQI	GTAC	3 cut(s)	125, 515, 682
DdeI	CTNAG	2 cut(s)	219, 645
DpnI	GATC	4 cut(s)	16, 150, 215, 435
DpnII	GATC	4 cut(s)	14, 148, 213, 433
DrdI	GACNNNNNNGTC	1 cut(s)	456
DseDI	GACNNNNNNGTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	452
Eco47I	GGWCC	2 cut(s)	8, 248
Eco88I	CYCGRG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	2 cut(s)	21, 580
FatI	CATG	2 cut(s)	17, 576
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	37, 183, 504
FokI	GGATG	2 cut(s)	556, 557
Fsp4HI	GCNGC	3 cut(s)	37, 183, 504
GluI	GCNGC	3 cut(s)	37, 183, 504
HapII	CCGG	2 cut(s)	334, 465
Hin1II	CATG	2 cut(s)	21, 580
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	82, 139, 421
HpaII	CCGG	2 cut(s)	334, 465
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	220, 648
Hpy188III	TCNNGA	5 cut(s)	110, 155, 191, 334, 478
Hpy8I	GTNNAC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	30, 615
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	91, 326, 569, 580, 598
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 167, 566, 604
HpyF3I	CTNAG	2 cut(s)	219, 645
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	21, 580
Kpn2I	TCCGGA	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	14, 148, 213, 433
Lsp1109I	GCAGC	2 cut(s)	169, 490
LweI	GCATC	3 cut(s)	335, 535, 578
MaeII	ACGT	1 cut(s)	52
MalI	GATC	4 cut(s)	16, 150, 215, 435
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	4 cut(s)	14, 148, 213, 433
MboII	GAAGA	4 cut(s)	298, 452, 506, 650
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	2 cut(s)	425, 472
MlyI	GAGTC	2 cut(s)	91, 133
MmeI	TCCRAC	1 cut(s)	597
Mph1103I	ATGCAT	1 cut(s)	571
MroI	TCCGGA	1 cut(s)	333
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	16
MspI	CCGG	2 cut(s)	334, 465
MspR9I	CCNGG	2 cut(s)	465, 466
MunI	CAATTG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	571
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	4 cut(s)	42, 167, 566, 604
NciI	CCSGG	2 cut(s)	465, 466
NdeII	GATC	4 cut(s)	14, 148, 213, 433
NlaIII	CATG	2 cut(s)	21, 580
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	1 cut(s)	580
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	3 cut(s)	38, 184, 505
PleI	GAGTC	2 cut(s)	90, 133
PpsI	GAGTC	2 cut(s)	90, 133
PpuMI	RGGWCCY	1 cut(s)	248
PsiI	TTATAA	1 cut(s)	672
Psp5II	RGGWCCY	1 cut(s)	248
PspPI	GGNCC	2 cut(s)	8, 248
PspPPI	RGGWCCY	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	3 cut(s)	126, 516, 683
RsaNI	GTAC	3 cut(s)	125, 515, 682
RseI	CAYNNNNRTG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	3 cut(s)	37, 183, 504
Sau3AI	GATC	4 cut(s)	14, 148, 213, 433
Sau96I	GGNCC	2 cut(s)	8, 248
SchI	GAGTC	2 cut(s)	91, 133
ScrFI	CCNGG	2 cut(s)	465, 466
SetI	ASST	8 cut(s)	55, 130, 250, 358, 458, 505, 532, 670
SfaNI	GCATC	3 cut(s)	335, 535, 578
SinI	GGWCC	2 cut(s)	8, 248
SmaI	CCCGGG	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	2 cut(s)	40, 290
SmoI	CTYRAG	2 cut(s)	40, 290
Sse9I	AATT	2 cut(s)	425, 472
SsiI	CCGC	3 cut(s)	37, 276, 607
StyD4I	CCNGG	2 cut(s)	463, 464
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	2 cut(s)	30, 615
TaiI	ACGT	1 cut(s)	55
TasI	AATT	2 cut(s)	425, 472
TatI	WGTACW	1 cut(s)	514
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	182, 503
TspDTI	ATGAA	2 cut(s)	513, 578
TspMI	CCCGGG	1 cut(s)	464
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	8, 248
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	580
XmaI	CCCGGG	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.