Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Forward (+)

9950698 .. 9952753

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTTGTAGTTAATGCTATGGTTGGACCACGATCATGGACAGGACTGTTTAGCCGCTCAAGCAACAAACGTAATGGGAAGTATGTTGACTACCCTTTGAATCCTATGCAGGAAGCCTTGAAAGCACTCTGGTATGCTGCCTTTCCAGATGTTGCTATCAGTGGTTTGATCTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTCCTAACCCATCTACGGACTTTAGGAGTTGCGGTGTTATTGCCCTTGAGAACTTGCTTTTCTTCGCCAGAACTTATCCTGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCGTGAAGTTATTAGGAGAAGATGAAGCTGCTTTTGATGTACTGTTCTGTATAGCTTTTGAAATGGATGTTCTGCAAGCAACGCGGACGCAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGAATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

199

Amino Acids

22.73

Weight (kDa)

6.34

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	36 - 165	4e-37	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AasI	GACNNNNNNGTC	1 cut(s)	414
AccBSI	CCGCTC	1 cut(s)	57
AccII	CGCG	1 cut(s)	517
AccIII	TCCGGA	1 cut(s)	291
AciI	CCGC	3 cut(s)	55, 234, 517
AclWI	GGATC	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	430
AfaI	GTAC	2 cut(s)	474, 593
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	5 cut(s)	100, 121, 307, 383, 494
AluBI	AGCT	3 cut(s)	461, 488, 578
AluI	AGCT	3 cut(s)	461, 488, 578
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	137, 461
ApoI	RAATTY	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	26, 203
AsuC2I	CCSGG	2 cut(s)	423, 424
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	2 cut(s)	26, 203
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	124, 448
BccI	CCATC	2 cut(s)	184, 220
BcnI	CCSGG	2 cut(s)	423, 424
BcoDI	GTCTC	1 cut(s)	313
BisI	GCNGC	3 cut(s)	55, 138, 462
BlsI	GCNGC	3 cut(s)	56, 139, 463
Bme1390I	CCNGG	2 cut(s)	423, 424
Bme18I	GGWCC	2 cut(s)	26, 203
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	26, 203
BmrFI	CCNGG	2 cut(s)	423, 424
BmsI	GCATC	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	43, 269
BpuMI	CCSGG	2 cut(s)	423, 424
BsaJI	CCNNGG	2 cut(s)	410, 422
BsaWI	WCCGGW	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	410, 422
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	165, 569
BseNI	ACTGG	1 cut(s)	595
BseXI	GCAGC	2 cut(s)	124, 448
Bsh1236I	CGCG	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	292, 423
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	313
BsmBI	CGTCTC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	422
Bsp13I	TCCGGA	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	32, 168, 391
BspACI	CCGC	3 cut(s)	55, 234, 517
BspCNI	CTCAG	2 cut(s)	166, 568
BspEI	TCCGGA	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	517
BspPI	GGATC	1 cut(s)	399
BsrBI	CCGCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	410, 422
BssMI	GATC	3 cut(s)	32, 168, 391
BssT1I	CCWWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	48, 477
BstC8I	GCNNGC	2 cut(s)	355, 510
BstDEI	CTNAG	2 cut(s)	174, 555
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	517
BstKTI	GATC	3 cut(s)	35, 171, 394
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	3 cut(s)	32, 168, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 122, 514
BstSCI	CCNGG	2 cut(s)	421, 422
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	124, 448
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	355, 510
Cfr13I	GGNCC	2 cut(s)	26, 203
Cfr9I	CCCGGG	1 cut(s)	422
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	473, 592
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	1 cut(s)	36
CviJI	RGCY	5 cut(s)	54, 116, 461, 488, 578
CviKI_1	RGCY	5 cut(s)	54, 116, 461, 488, 578
CviQI	GTAC	2 cut(s)	473, 592
DdeI	CTNAG	2 cut(s)	174, 555
DpnI	GATC	3 cut(s)	34, 170, 393
DpnII	GATC	3 cut(s)	32, 168, 391
DrdI	GACNNNNNNGTC	1 cut(s)	414
DseDI	GACNNNNNNGTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	410
Eco47I	GGWCC	2 cut(s)	26, 203
Eco88I	CYCGRG	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	1 cut(s)	39
FatI	CATG	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	55, 138, 462
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	3 cut(s)	55, 138, 462
GluI	GCNGC	3 cut(s)	55, 138, 462
HapII	CCGG	2 cut(s)	292, 423
HgaI	GACGC	1 cut(s)	529
Hin1II	CATG	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	100, 379
HpaII	CCGG	2 cut(s)	292, 423
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	175, 558
Hpy188III	TCNNGA	3 cut(s)	146, 292, 436
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	48, 477
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	109, 284, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 122, 514
HpyF3I	CTNAG	2 cut(s)	174, 555
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	39
Kpn2I	TCCGGA	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	32, 168, 391
Lsp1109I	GCAGC	2 cut(s)	124, 448
LweI	GCATC	1 cut(s)	293
MaeII	ACGT	1 cut(s)	70
MalI	GATC	3 cut(s)	34, 170, 393
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	3 cut(s)	32, 168, 391
MboII	GAAGA	4 cut(s)	256, 410, 464, 560
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	1 cut(s)	391
MluCI	AATT	2 cut(s)	383, 430
MmeI	TCCRAC	2 cut(s)	4, 507
MroI	TCCGGA	1 cut(s)	291
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	34
MspI	CCGG	2 cut(s)	292, 423
MspR9I	CCNGG	2 cut(s)	423, 424
MunI	CAATTG	1 cut(s)	383
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	3 cut(s)	60, 122, 514
NciI	CCSGG	2 cut(s)	423, 424
NdeII	GATC	3 cut(s)	32, 168, 391
NlaIII	CATG	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	100, 379
PkrI	GCNGC	3 cut(s)	56, 139, 463
PpuMI	RGGWCCY	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	26, 203
PspPPI	RGGWCCY	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	2 cut(s)	474, 593
RsaNI	GTAC	2 cut(s)	473, 592
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	3 cut(s)	55, 138, 462
Sau3AI	GATC	3 cut(s)	32, 168, 391
Sau96I	GGNCC	2 cut(s)	26, 203
ScrFI	CCNGG	2 cut(s)	423, 424
SetI	ASST	7 cut(s)	73, 205, 316, 416, 463, 490, 580
SfaNI	GCATC	1 cut(s)	293
SinI	GGWCC	2 cut(s)	26, 203
SmaI	CCCGGG	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	58, 248
SmoI	CTYRAG	2 cut(s)	58, 248
Sse9I	AATT	2 cut(s)	383, 430
SsiI	CCGC	3 cut(s)	55, 234, 517
StyD4I	CCNGG	2 cut(s)	421, 422
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	48, 477
TaiI	ACGT	1 cut(s)	73
TasI	AATT	2 cut(s)	383, 430
TatI	WGTACW	1 cut(s)	472
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	100, 379
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	137, 461
TspDTI	ATGAA	1 cut(s)	471
TspGWI	ACGGA	1 cut(s)	233
TspMI	CCCGGG	1 cut(s)	422
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	2 cut(s)	26, 203
XapI	RAATTY	1 cut(s)	430
XmaI	CCCGGG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.