RLG00000021348

ELMO domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
74356080 .. 74361668
5589 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021348

Sequence Viewer

Length: 1194 bp
ATGAAGGGTTGCAATGTTACTGTCATCCCAGTTCTCCTTGTTCTTCTTTTAGTTCCAGCTGCCATGTCTGCTAGGCACATAGCTCGCCCTCACTCACGTCATGTACGTAATCTGCGTTCTTCATCTGCGGTACCAACAAGTACTACTATGACCGCAACAAAAGATCATCGGAGTACTCATGTGGCTGCAGGAAAATTCCTCAGAAAGGGGCCGGACACACTCCAAGTGGCAGGCTCTTCGCTACCGGATTGTTCACACGCCTGCGGATCTTGTACACCCTGTAGACTGGTGATGGTGAGCTTCGTTTGCGCGTCGATAGATGAAGCTGAGACTTGCCCCATGGCTTACAAGTGCATGTGTAATAACAAGTCTTACCCTGTTCCCATTAAGGTTGATGAGGATGAGATTTATTGGACACAGAAGAGCAAAAGCAGTAAGGGGCCACGTGGTTCAACTCGTGTGATACCACAGTCAGTTCAATGTTTTATTAATGCTATGGTTGGACCACGATCATGGACAGGACTGTTTAGCCGCTCAAGCAACAAACGTAATGGAAAGTATGTTGACTACCCTTTGAGTCCTATGCAGGAGCAGAGACTTTTGGGGCTTCAAGAACGACTACAAGTACCTTTTGACGAGACTCGCCCTGATCATCAAGAAGCCTTGAAAGCACTCTGGTATGCTGCCTTTCCAGATGTTGCTATCAGTGGTTTGATCTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTCCTAACCCATCTACTGACTTTAGGAGTTGCGGTGTTATTGCCCTTGAGAACTTGCTTTTCTTCGCCAGAACTTATCCTGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTGTTCCCGGGATAAATTTCGTGAAGTTATTAGGAGAAGATGAAGCTGCTTTTGATGTATTGTTCTGTATAGCTTTTGAAATGGTGGATGCTCAATGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGATGTTCTGCAAGCAACGCGGACGCAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGAATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Protein Analysis

398

Amino Acids

44.56

Weight (kDa)

8.74

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 77 - 126 2.5e-14 Epidermal patterning factor proteins
ELMO_CED12 PF04727 203 - 367 8.7e-51 ELMO/CED-12 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1176
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 130
AccBSI CCGCTC 1 cut(s) 534
AccI GTMKAC 1 cut(s) 283
AccII CGCG 2 cut(s) 311, 1111
AccIII TCCGGA 1 cut(s) 837
AciI CCGC 6 cut(s) 128, 153, 264, 532, 780, 1111
AclWI GGATC 2 cut(s) 274, 945
AcsI RAATTY 2 cut(s) 194, 976
AcvI CACGTG 1 cut(s) 446
AfaI GTAC 7 cut(s) 105, 132, 142, 175, 274, 627, 1187
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 7 cut(s) 453, 479, 611, 667, 853, 929, 1040
AjiI CACGTC 1 cut(s) 98
AluBI AGCT 7 cut(s) 59, 83, 300, 326, 1007, 1034, 1172
AluI AGCT 7 cut(s) 59, 83, 300, 326, 1007, 1034, 1172
Alw26I GTCTC 4 cut(s) 323, 589, 632, 859
AlwI GGATC 2 cut(s) 274, 945
Ama87I CYCGRG 1 cut(s) 968
Aor13HI TCCGGA 1 cut(s) 837
AoxI GGCC 2 cut(s) 209, 440
ApeKI GCWGC 4 cut(s) 59, 185, 683, 1007
ApoI RAATTY 2 cut(s) 194, 976
AseI ATTAAT 1 cut(s) 489
Asp718I GGTACC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 4 cut(s) 209, 440, 503, 749
AsuC2I CCSGG 2 cut(s) 969, 970
AsuHPI GGTGA 2 cut(s) 301, 307
AvaI CYCGRG 1 cut(s) 968
AvaII GGWCC 2 cut(s) 503, 749
BaeI ACNNNNGTAYC 2 cut(s) 455, 488
BanI GGYRCC 1 cut(s) 130
BauI CACGAG 1 cut(s) 456
BbrPI CACGTG 1 cut(s) 446
BbvI GCAGC 4 cut(s) 46, 172, 670, 994
BccI CCATC 3 cut(s) 286, 730, 766
BcgI CGANNNNNNTGC 4 cut(s) 65, 99, 219, 253
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 2 cut(s) 969, 970
BcoDI GTCTC 4 cut(s) 323, 589, 632, 859
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 2 cut(s) 186, 280
BisI GCNGC 5 cut(s) 60, 186, 532, 684, 1008
BlsI GCNGC 5 cut(s) 61, 187, 533, 685, 1009
BmcAI AGTACT 2 cut(s) 142, 175
Bme1390I CCNGG 2 cut(s) 969, 970
Bme18I GGWCC 2 cut(s) 503, 749
BmeT110I CYCGRG 1 cut(s) 968
BmgBI CACGTC 1 cut(s) 98
BmgT120I GGNCC 4 cut(s) 209, 440, 503, 749
BmiI GGNNCC 3 cut(s) 132, 210, 441
BmrFI CCNGG 2 cut(s) 969, 970
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 3 cut(s) 839, 1039, 1082
BmuI ACTGGG 1 cut(s) 23
BpuEI CTTGAG 2 cut(s) 520, 815
BpuMI CCSGG 2 cut(s) 969, 970
BsaAI YACGTR 2 cut(s) 107, 446
BsaJI CCNNGG 3 cut(s) 339, 956, 968
BsaWI WCCGGW 2 cut(s) 244, 837
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 3 cut(s) 29, 291, 1189
Bse3DI GCAATG 2 cut(s) 19, 731
BseAI TCCGGA 1 cut(s) 837
BseDI CCNNGG 3 cut(s) 339, 956, 968
BseGI GGATG 4 cut(s) 24, 406, 1054, 1073
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 2 cut(s) 19, 731
BseMII CTCAG 4 cut(s) 214, 318, 711, 1163
BseNI ACTGG 3 cut(s) 29, 291, 1189
BseXI GCAGC 4 cut(s) 46, 172, 670, 994
Bsh1236I CGCG 2 cut(s) 311, 1111
BshFI GGCC 2 cut(s) 211, 442
BshNI GGYRCC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 968
BsiSI CCGG 4 cut(s) 212, 245, 838, 969
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 4 cut(s) 323, 589, 632, 859
BsmBI CGTCTC 1 cut(s) 859
BsmI GAATGC 1 cut(s) 1075
BsnI GGCC 2 cut(s) 211, 442
BsoBI CYCGRG 1 cut(s) 968
Bsp13I TCCGGA 1 cut(s) 837
Bsp1407I TGTACA 1 cut(s) 272
Bsp143I GATC 6 cut(s) 163, 266, 509, 649, 714, 937
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 6 cut(s) 128, 153, 264, 532, 780, 1111
BspANI GGCC 2 cut(s) 211, 442
BspCNI CTCAG 4 cut(s) 213, 319, 712, 1162
BspEI TCCGGA 1 cut(s) 837
BspFNI CGCG 2 cut(s) 311, 1111
BspLI GGNNCC 3 cut(s) 132, 210, 441
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 2 cut(s) 274, 945
BspQI GCTCTTC 2 cut(s) 241, 416
BspT107I GGYRCC 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 534
BsrDI GCAATG 2 cut(s) 19, 731
BsrGI TGTACA 1 cut(s) 272
BsrI ACTGG 3 cut(s) 29, 291, 1189
BssECI CCNNGG 3 cut(s) 339, 956, 968
BssMI GATC 6 cut(s) 163, 266, 509, 649, 714, 937
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 2 cut(s) 339, 956
Bst2BI CACGAG 1 cut(s) 456
Bst4CI ACNGT 3 cut(s) 22, 471, 525
Bst6I CTCTTC 2 cut(s) 241, 416
BstAUI TGTACA 1 cut(s) 272
BstBAI YACGTR 2 cut(s) 107, 446
BstC8I GCNNGC 6 cut(s) 85, 232, 262, 901, 1062, 1104
BstDEI CTNAG 4 cut(s) 200, 327, 720, 1149
BstDSI CCRYGG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 4 cut(s) 24, 406, 1054, 1073
BstFNI CGCG 2 cut(s) 311, 1111
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 6 cut(s) 166, 269, 512, 652, 717, 940
BstMAI GTCTC 4 cut(s) 323, 589, 632, 859
BstMBI GATC 6 cut(s) 163, 266, 509, 649, 714, 937
BstMWI GCNNNNNNNGC 6 cut(s) 68, 306, 537, 668, 1070, 1108
BstNSI RCATGY 2 cut(s) 358, 1084
BstSCI CCNGG 2 cut(s) 967, 968
BstSFI CTRYAG 2 cut(s) 186, 280
BstSNI TACGTA 1 cut(s) 107
BstUI CGCG 2 cut(s) 311, 1111
BstV1I GCAGC 4 cut(s) 46, 172, 670, 994
BstX2I RGATCY 2 cut(s) 266, 937
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 2 cut(s) 266, 937
BsuRI GGCC 2 cut(s) 211, 442
BtgI CCRYGG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 98
BtsCI GGATG 4 cut(s) 24, 406, 1054, 1073
BtsIMutI CAGTG 1 cut(s) 712
Cac8I GCNNGC 6 cut(s) 85, 232, 262, 901, 1062, 1104
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 4 cut(s) 209, 440, 503, 749
Cfr9I CCCGGG 1 cut(s) 968
CseI GACGC 2 cut(s) 300, 1123
Csp6I GTAC 7 cut(s) 104, 131, 141, 174, 273, 626, 1186
CspCI CAANNNNNGTGG 2 cut(s) 841, 876
CviAII CATG 7 cut(s) 64, 101, 179, 340, 355, 513, 1081
CviQI GTAC 7 cut(s) 104, 131, 141, 174, 273, 626, 1186
DdeI CTNAG 4 cut(s) 200, 327, 720, 1149
DpnI GATC 6 cut(s) 165, 268, 511, 651, 716, 939
DpnII GATC 6 cut(s) 163, 266, 509, 649, 714, 937
Eam1104I CTCTTC 2 cut(s) 241, 416
EarI CTCTTC 2 cut(s) 241, 416
Eco105I TACGTA 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 339, 956
Eco47I GGWCC 2 cut(s) 503, 749
Eco72I CACGTG 1 cut(s) 446
Eco88I CYCGRG 1 cut(s) 968
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 749
EcoT14I CCWWGG 2 cut(s) 339, 956
EcoT22I ATGCAT 1 cut(s) 1075
ErhI CCWWGG 2 cut(s) 339, 956
Esp3I CGTCTC 1 cut(s) 859
FaeI CATG 7 cut(s) 67, 104, 182, 343, 358, 516, 1084
FatI CATG 7 cut(s) 63, 100, 178, 339, 354, 512, 1080
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 5 cut(s) 60, 186, 532, 684, 1008
FokI GGATG 4 cut(s) 11, 413, 1060, 1061
Fsp4HI GCNGC 5 cut(s) 60, 186, 532, 684, 1008
FspBI CTAG 1 cut(s) 72
GlaI GCGC 1 cut(s) 310
GluI GCNGC 5 cut(s) 60, 186, 532, 684, 1008
HaeIII GGCC 2 cut(s) 211, 442
HapII CCGG 4 cut(s) 212, 245, 838, 969
HgaI GACGC 2 cut(s) 300, 1123
HhaI GCGC 1 cut(s) 311
Hin1II CATG 7 cut(s) 67, 104, 182, 343, 358, 516, 1084
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 3 cut(s) 577, 640, 925
HpaII CCGG 4 cut(s) 212, 245, 838, 969
HphI GGTGA 2 cut(s) 301, 307
Hpy166II GTNNAC 4 cut(s) 254, 275, 284, 565
Hpy188I TCNGA 4 cut(s) 171, 203, 721, 1152
Hpy188III TCNNGA 5 cut(s) 611, 656, 692, 838, 982
Hpy8I GTNNAC 4 cut(s) 254, 275, 284, 565
Hpy99I CGWCG 1 cut(s) 316
HpyCH4III ACNGT 3 cut(s) 22, 471, 525
HpyCH4IV ACGT 4 cut(s) 97, 106, 445, 547
HpyCH4V TGCA 8 cut(s) 12, 188, 354, 586, 830, 1073, 1084, 1102
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 306, 537, 668, 1070, 1108
HpyF3I CTNAG 4 cut(s) 200, 327, 720, 1149
HpySE526I ACGT 4 cut(s) 97, 106, 445, 547
Hsp92II CATG 7 cut(s) 67, 104, 182, 343, 358, 516, 1084
HspAI GCGC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 837
KpnI GGTACC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 6 cut(s) 163, 266, 509, 649, 714, 937
LguI GCTCTTC 2 cut(s) 241, 416
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 4 cut(s) 46, 172, 670, 994
LweI GCATC 3 cut(s) 839, 1039, 1082
MaeI CTAG 1 cut(s) 72
MaeII ACGT 4 cut(s) 97, 106, 445, 547
MaeIII GTNAC 1 cut(s) 16
MalI GATC 6 cut(s) 165, 268, 511, 651, 716, 939
MbiI CCGCTC 1 cut(s) 534
MboI GATC 6 cut(s) 163, 266, 509, 649, 714, 937
MboII GAAGA 7 cut(s) 35, 111, 228, 433, 802, 1010, 1154
MfeI CAATTG 1 cut(s) 929
MflI RGATCY 2 cut(s) 266, 937
MluCI AATT 3 cut(s) 194, 929, 976
MlyI GAGTC 2 cut(s) 586, 634
MmeI TCCRAC 2 cut(s) 481, 1101
MnlI CCTC 3 cut(s) 99, 209, 391
Mph1103I ATGCAT 1 cut(s) 1075
MroI TCCGGA 1 cut(s) 837
MseI TTAA 3 cut(s) 387, 489, 1089
MslI CAYNNNNRTG 1 cut(s) 511
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 4 cut(s) 212, 245, 838, 969
MspR9I CCNGG 2 cut(s) 969, 970
MunI CAATTG 1 cut(s) 929
Mva1269I GAATGC 1 cut(s) 1075
MvnI CGCG 2 cut(s) 311, 1111
MwoI GCNNNNNNNGC 6 cut(s) 68, 306, 537, 668, 1070, 1108
NciI CCSGG 2 cut(s) 969, 970
NcoI CCATGG 1 cut(s) 339
NdeII GATC 6 cut(s) 163, 266, 509, 649, 714, 937
NlaIII CATG 7 cut(s) 67, 104, 182, 343, 358, 516, 1084
NlaIV GGNNCC 3 cut(s) 132, 210, 441
NsiI ATGCAT 1 cut(s) 1075
NspI RCATGY 2 cut(s) 358, 1084
PciSI GCTCTTC 2 cut(s) 241, 416
PcsI WCGNNNNNNNCGW 2 cut(s) 103, 112
PctI GAATGC 1 cut(s) 1075
PfeI GAWTC 1 cut(s) 925
PkrI GCNGC 5 cut(s) 61, 187, 533, 685, 1009
PleI GAGTC 2 cut(s) 585, 634
PmaCI CACGTG 1 cut(s) 446
PmlI CACGTG 1 cut(s) 446
PpsI GAGTC 2 cut(s) 585, 634
Ppu21I YACGTR 2 cut(s) 107, 446
PpuMI RGGWCCY 1 cut(s) 749
PshBI ATTAAT 1 cut(s) 489
PsiI TTATAA 1 cut(s) 1176
Psp5II RGGWCCY 1 cut(s) 749
PspCI CACGTG 1 cut(s) 446
PspN4I GGNNCC 3 cut(s) 132, 210, 441
PspPI GGNCC 4 cut(s) 209, 440, 503, 749
PspPPI RGGWCCY 1 cut(s) 749
PsrI GAACNNNNNNTAC 2 cut(s) 100, 132
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 2 cut(s) 266, 937
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 7 cut(s) 105, 132, 142, 175, 274, 627, 1187
RsaNI GTAC 7 cut(s) 104, 131, 141, 174, 273, 626, 1186
RseI CAYNNNNRTG 1 cut(s) 511
SapI GCTCTTC 2 cut(s) 241, 416
SaqAI TTAA 3 cut(s) 387, 489, 1089
SatI GCNGC 5 cut(s) 60, 186, 532, 684, 1008
Sau3AI GATC 6 cut(s) 163, 266, 509, 649, 714, 937
Sau96I GGNCC 4 cut(s) 209, 440, 503, 749
ScaI AGTACT 2 cut(s) 142, 175
SchI GAGTC 2 cut(s) 586, 634
ScrFI CCNGG 2 cut(s) 969, 970
SfaNI GCATC 3 cut(s) 839, 1039, 1082
SfcI CTRYAG 2 cut(s) 186, 280
SinI GGWCC 2 cut(s) 503, 749
SmaI CCCGGG 1 cut(s) 970
SmiMI CAYNNNNRTG 1 cut(s) 511
SmlI CTYRAG 2 cut(s) 535, 794
SmoI CTYRAG 2 cut(s) 535, 794
SnaBI TACGTA 1 cut(s) 107
Sse9I AATT 3 cut(s) 194, 929, 976
SsiI CCGC 6 cut(s) 128, 153, 264, 532, 780, 1111
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 967, 968
StyI CCWWGG 2 cut(s) 339, 956
TaaI ACNGT 3 cut(s) 22, 471, 525
TaiI ACGT 4 cut(s) 100, 109, 448, 550
TaqI TCGA 1 cut(s) 314
TasI AATT 3 cut(s) 194, 929, 976
TatI WGTACW 3 cut(s) 140, 173, 272
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 1 cut(s) 925
Tru1I TTAA 3 cut(s) 387, 489, 1089
Tru9I TTAA 3 cut(s) 387, 489, 1089
TscAI CASTG 1 cut(s) 712
TseI GCWGC 4 cut(s) 59, 185, 683, 1007
TspDTI ATGAA 5 cut(s) 17, 111, 336, 1017, 1082
TspMI CCCGGG 1 cut(s) 968
TspRI CASTG 1 cut(s) 712
VpaK11BI GGWCC 2 cut(s) 503, 749
VspI ATTAAT 1 cut(s) 489
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 2 cut(s) 194, 976
XceI RCATGY 2 cut(s) 358, 1084
XmaI CCCGGG 1 cut(s) 968
XmiI GTMKAC 1 cut(s) 283
XspI CTAG 1 cut(s) 72
ZrmI AGTACT 2 cut(s) 142, 175
Zsp2I ATGCAT 1 cut(s) 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.