Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Reverse (-)

79354391 .. 79358040

Gene Structure 3650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG563900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTTGGACCACGATCATGGACAGGACTGTTTAGCCGCTCAAGCAACAAACGTAATGGGAAGTATGTTGACTACCCTTTGAGTCCTATGCAGGAGCAGAGACTTTTGGGGCTTCAAGAACGACTACAAGTACCTTTTGACGAGACTCGCCCTGATCATCAAGAAGCCTTGAAAGCACTCTGGTATGCTGCCTTTCCAGATGTTGCTATCAGTGGTTTGATCTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTCCTAACCCATCTACTGACTTTAGGAGTTGCGGTGTTATTGCCCTTGAGAACTTGCTTTTCTTCGCCAGAACTTATCCTGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCGTGAAGTTATTAGGAGAAGATGAAGCTGCTTTTGATGTACTGTTCTGTATAGCTTTTGAAATGGTGGATGCTCAATGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGATGTTCTGCAAGCAACGCGGACGCAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGAATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

232

Amino Acids

26.75

Weight (kDa)

5.34

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	38 - 202	1.2e-51	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
AasI	GACNNNNNNGTC	1 cut(s)	465
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	616
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	3 cut(s)	37, 285, 616
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	481
AfaI	GTAC	3 cut(s)	132, 525, 692
AgsI	TTSAA	5 cut(s)	116, 172, 358, 434, 545
AluBI	AGCT	3 cut(s)	512, 539, 677
AluI	AGCT	3 cut(s)	512, 539, 677
Alw26I	GTCTC	3 cut(s)	94, 137, 364
AlwI	GGATC	1 cut(s)	450
Ama87I	CYCGRG	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	188, 512
ApoI	RAATTY	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	8, 254
AsuC2I	CCSGG	2 cut(s)	474, 475
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	2 cut(s)	8, 254
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	175, 499
BccI	CCATC	2 cut(s)	235, 271
BclI	TGATCA	1 cut(s)	154
BcnI	CCSGG	2 cut(s)	474, 475
BcoDI	GTCTC	3 cut(s)	94, 137, 364
BisI	GCNGC	3 cut(s)	37, 189, 513
BlsI	GCNGC	3 cut(s)	38, 190, 514
Bme1390I	CCNGG	2 cut(s)	474, 475
Bme18I	GGWCC	2 cut(s)	8, 254
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	8, 254
BmrFI	CCNGG	2 cut(s)	474, 475
BmsI	GCATC	3 cut(s)	344, 544, 587
BpiI	GAAGAC	1 cut(s)	461
BpuEI	CTTGAG	2 cut(s)	25, 320
BpuMI	CCSGG	2 cut(s)	474, 475
BsaJI	CCNNGG	2 cut(s)	461, 473
BsaWI	WCCGGW	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bse1I	ACTGG	1 cut(s)	694
Bse3DI	GCAATG	1 cut(s)	236
BseAI	TCCGGA	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	461, 473
BseGI	GGATG	2 cut(s)	559, 578
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	2 cut(s)	216, 668
BseNI	ACTGG	1 cut(s)	694
BseXI	GCAGC	2 cut(s)	175, 499
Bsh1236I	CGCG	1 cut(s)	616
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	343, 474
BsmAI	GTCTC	3 cut(s)	94, 137, 364
BsmBI	CGTCTC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	473
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	14, 154, 219, 442
BspACI	CCGC	3 cut(s)	37, 285, 616
BspCNI	CTCAG	2 cut(s)	217, 667
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	616
BspPI	GGATC	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	694
BssECI	CCNNGG	2 cut(s)	461, 473
BssMI	GATC	4 cut(s)	14, 154, 219, 442
BssT1I	CCWWGG	1 cut(s)	461
Bst4CI	ACNGT	2 cut(s)	30, 528
BstC8I	GCNNGC	3 cut(s)	406, 567, 609
BstDEI	CTNAG	2 cut(s)	225, 654
BstF5I	GGATG	2 cut(s)	559, 578
BstFNI	CGCG	1 cut(s)	616
BstKTI	GATC	4 cut(s)	17, 157, 222, 445
BstMAI	GTCTC	3 cut(s)	94, 137, 364
BstMBI	GATC	4 cut(s)	14, 154, 219, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 173, 575, 613
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	472, 473
BstUI	CGCG	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	175, 499
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	442
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	559, 578
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	406, 567, 609
Cfr13I	GGNCC	2 cut(s)	8, 254
Cfr9I	CCCGGG	1 cut(s)	473
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	3 cut(s)	131, 524, 691
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	2 cut(s)	18, 586
CviJI	RGCY	7 cut(s)	36, 112, 167, 512, 539, 565, 677
CviKI_1	RGCY	7 cut(s)	36, 112, 167, 512, 539, 565, 677
CviQI	GTAC	3 cut(s)	131, 524, 691
DdeI	CTNAG	2 cut(s)	225, 654
DpnI	GATC	4 cut(s)	16, 156, 221, 444
DpnII	GATC	4 cut(s)	14, 154, 219, 442
DrdI	GACNNNNNNGTC	1 cut(s)	465
DseDI	GACNNNNNNGTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	461
Eco47I	GGWCC	2 cut(s)	8, 254
Eco88I	CYCGRG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	461
EcoT22I	ATGCAT	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	461
Esp3I	CGTCTC	1 cut(s)	364
FaeI	CATG	2 cut(s)	21, 589
FatI	CATG	2 cut(s)	17, 585
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	37, 189, 513
FokI	GGATG	2 cut(s)	565, 566
Fsp4HI	GCNGC	3 cut(s)	37, 189, 513
GluI	GCNGC	3 cut(s)	37, 189, 513
HapII	CCGG	2 cut(s)	343, 474
HgaI	GACGC	1 cut(s)	628
Hin1II	CATG	2 cut(s)	21, 589
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	82, 145, 430
HpaII	CCGG	2 cut(s)	343, 474
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	226, 657
Hpy188III	TCNNGA	5 cut(s)	116, 161, 197, 343, 487
Hpy8I	GTNNAC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	30, 528
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	91, 335, 578, 589, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 173, 575, 613
HpyF3I	CTNAG	2 cut(s)	225, 654
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	21, 589
Kpn2I	TCCGGA	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	14, 154, 219, 442
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	2 cut(s)	175, 499
LweI	GCATC	3 cut(s)	344, 544, 587
MaeII	ACGT	1 cut(s)	52
MalI	GATC	4 cut(s)	16, 156, 221, 444
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	4 cut(s)	14, 154, 219, 442
MboII	GAAGA	4 cut(s)	307, 461, 515, 659
MfeI	CAATTG	1 cut(s)	434
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	2 cut(s)	434, 481
MlyI	GAGTC	2 cut(s)	91, 139
MmeI	TCCRAC	1 cut(s)	606
Mph1103I	ATGCAT	1 cut(s)	580
MroI	TCCGGA	1 cut(s)	342
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	16
MspI	CCGG	2 cut(s)	343, 474
MspR9I	CCNGG	2 cut(s)	474, 475
MunI	CAATTG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	580
MvnI	CGCG	1 cut(s)	616
MwoI	GCNNNNNNNGC	4 cut(s)	42, 173, 575, 613
NciI	CCSGG	2 cut(s)	474, 475
NdeII	GATC	4 cut(s)	14, 154, 219, 442
NlaIII	CATG	2 cut(s)	21, 589
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	1 cut(s)	589
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	38, 190, 514
PleI	GAGTC	2 cut(s)	90, 139
PpsI	GAGTC	2 cut(s)	90, 139
PpuMI	RGGWCCY	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	8, 254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	3 cut(s)	132, 525, 692
RsaNI	GTAC	3 cut(s)	131, 524, 691
RseI	CAYNNNNRTG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	3 cut(s)	37, 189, 513
Sau3AI	GATC	4 cut(s)	14, 154, 219, 442
Sau96I	GGNCC	2 cut(s)	8, 254
SchI	GAGTC	2 cut(s)	91, 139
ScrFI	CCNGG	2 cut(s)	474, 475
SetI	ASST	8 cut(s)	55, 136, 256, 367, 467, 514, 541, 679
SfaNI	GCATC	3 cut(s)	344, 544, 587
SinI	GGWCC	2 cut(s)	8, 254
SmaI	CCCGGG	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	2 cut(s)	40, 299
SmoI	CTYRAG	2 cut(s)	40, 299
Sse9I	AATT	2 cut(s)	434, 481
SsiI	CCGC	3 cut(s)	37, 285, 616
StyD4I	CCNGG	2 cut(s)	472, 473
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	2 cut(s)	30, 528
TaiI	ACGT	1 cut(s)	55
TasI	AATT	2 cut(s)	434, 481
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	2 cut(s)	188, 512
TspDTI	ATGAA	2 cut(s)	522, 587
TspMI	CCCGGG	1 cut(s)	473
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	8, 254
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	1 cut(s)	589
XmaI	CCCGGG	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.