Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Reverse (-)

81789891 .. 81795466

Gene Structure 5576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG586400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAGGGTTGCAATGTTACTGTCATCGCAGTTCTCCTTGTTCTTCTTTTAGTTCCAGCTGCCATGTCTGCTAGGCATATAGCTCGCCCTCACTCACGTCATGTACGTAATCTGCGTTCTTCATCTGCGGTACCAACAAGTACTACTATGACCGCAACAAAAGATCATCGGAATACTCATGTGGCTACAGGAAAATTCCTCAGAAAGGGGCCGGACACACTCCAAGTGGCAGGCTCTTCGCTACCGGATTGTTCACACGCCTGCGGATCTTGCACGCCCTGTAGACTGGTGATGGTTGATGAGGATGAGATTTATTGGACACAGAAGAGCAAAAGCAGTAAGGAGCAACGTGGTTCAACTCGTGTGATACCACAGTCAGTTCAATGTTTTATTAATGCTATGGTTGGACCACGATCATGGACAGGACTGTTTAGCCGCTCAAGCAACAAACGTAATGGGAAGTATGTTGACTACCCTTTGAGTCCTATGCAGGAGCAGAGACTTTTGGGGCTTCAAGAACGACTACAAGTACCTTTTGACGAGACTCGCCCTGATCATCAAGAAGCCTTGAAAGCACTCTGGTATGCTGCCTTTCCAGATGTTGCTATCAGTGGTTTGATCTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTCCTAACCCATCTACTGACTTTAGGAGTTGCGGTGTTATTGCCCTTGAGAACTTGCTTTTCTTCGCCAGAACTTATCCTGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCGTGAAGTTATTAGGAGAAGATGAAGCTGTTTTTGATGTACTTTTCTGTATAGCTTTTGAAATGGTGGATGCTCAATGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGATGTTCTGCAAGCAACGCGGACGCAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGAATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

365

Amino Acids

41.21

Weight (kDa)

8.83

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	77 - 114	1.3e-09	Epidermal patterning factor proteins
ELMO_CED12	PF04727	171 - 335	8.5e-51	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
AasI	GACNNNNNNGTC	1 cut(s)	864
Acc65I	GGTACC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	130
AccBSI	CCGCTC	1 cut(s)	438
AccI	GTMKAC	1 cut(s)	283
AccII	CGCG	1 cut(s)	1015
AccIII	TCCGGA	1 cut(s)	741
AciI	CCGC	6 cut(s)	128, 153, 264, 436, 684, 1015
AclWI	GGATC	2 cut(s)	274, 849
AcsI	RAATTY	2 cut(s)	194, 880
AfaI	GTAC	6 cut(s)	105, 132, 142, 531, 924, 1091
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	7 cut(s)	357, 383, 515, 571, 757, 833, 944
AjiI	CACGTC	1 cut(s)	98
AluBI	AGCT	5 cut(s)	59, 83, 911, 938, 1076
AluI	AGCT	5 cut(s)	59, 83, 911, 938, 1076
Alw26I	GTCTC	3 cut(s)	493, 536, 763
AlwI	GGATC	2 cut(s)	274, 849
Ama87I	CYCGRG	1 cut(s)	872
Aor13HI	TCCGGA	1 cut(s)	741
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	59, 587
ApoI	RAATTY	2 cut(s)	194, 880
AseI	ATTAAT	1 cut(s)	393
Asp718I	GGTACC	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	209, 407, 653
AsuC2I	CCSGG	2 cut(s)	873, 874
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	2 cut(s)	407, 653
BaeI	ACNNNNGTAYC	2 cut(s)	359, 392
BanI	GGYRCC	1 cut(s)	130
BauI	CACGAG	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	860
BbvI	GCAGC	2 cut(s)	46, 574
BccI	CCATC	3 cut(s)	286, 634, 670
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 219, 253
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	2 cut(s)	873, 874
BcoDI	GTCTC	3 cut(s)	493, 536, 763
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	186, 280
BisI	GCNGC	3 cut(s)	60, 436, 588
BlsI	GCNGC	3 cut(s)	61, 437, 589
BmcAI	AGTACT	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	873, 874
Bme18I	GGWCC	2 cut(s)	407, 653
BmeT110I	CYCGRG	1 cut(s)	872
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	209, 407, 653
BmiI	GGNNCC	2 cut(s)	132, 210
BmrFI	CCNGG	2 cut(s)	873, 874
BmsI	GCATC	3 cut(s)	743, 943, 986
BpiI	GAAGAC	1 cut(s)	860
BpuEI	CTTGAG	2 cut(s)	424, 719
BpuMI	CCSGG	2 cut(s)	873, 874
BsaAI	YACGTR	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	860, 872
BsaWI	WCCGGW	2 cut(s)	244, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	670, 700
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	291, 1093
Bse3DI	GCAATG	2 cut(s)	19, 635
BseAI	TCCGGA	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	860, 872
BseGI	GGATG	3 cut(s)	310, 958, 977
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	2 cut(s)	19, 635
BseMII	CTCAG	3 cut(s)	214, 615, 1067
BseNI	ACTGG	2 cut(s)	291, 1093
BseXI	GCAGC	2 cut(s)	46, 574
Bsh1236I	CGCG	1 cut(s)	1015
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	4 cut(s)	212, 245, 742, 873
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	3 cut(s)	493, 536, 763
BsmBI	CGTCTC	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	979
BsnI	GGCC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	872
Bsp13I	TCCGGA	1 cut(s)	741
Bsp143I	GATC	6 cut(s)	163, 266, 413, 553, 618, 841
BspACI	CCGC	6 cut(s)	128, 153, 264, 436, 684, 1015
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	3 cut(s)	213, 616, 1066
BspEI	TCCGGA	1 cut(s)	741
BspFNI	CGCG	1 cut(s)	1015
BspLI	GGNNCC	2 cut(s)	132, 210
BspPI	GGATC	2 cut(s)	274, 849
BspQI	GCTCTTC	2 cut(s)	241, 320
BspT107I	GGYRCC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	438
BsrDI	GCAATG	2 cut(s)	19, 635
BsrI	ACTGG	2 cut(s)	291, 1093
BssECI	CCNNGG	2 cut(s)	860, 872
BssMI	GATC	6 cut(s)	163, 266, 413, 553, 618, 841
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	860
Bst2BI	CACGAG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	22, 375, 429
Bst6I	CTCTTC	2 cut(s)	241, 320
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	7 cut(s)	85, 232, 262, 275, 805, 966, 1008
BstDEI	CTNAG	3 cut(s)	200, 624, 1053
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	3 cut(s)	310, 958, 977
BstFNI	CGCG	1 cut(s)	1015
BstKTI	GATC	6 cut(s)	166, 269, 416, 556, 621, 844
BstMAI	GTCTC	3 cut(s)	493, 536, 763
BstMBI	GATC	6 cut(s)	163, 266, 413, 553, 618, 841
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 270, 441, 572, 974, 1012
BstNSI	RCATGY	1 cut(s)	988
BstSCI	CCNGG	2 cut(s)	871, 872
BstSFI	CTRYAG	2 cut(s)	186, 280
BstSNI	TACGTA	1 cut(s)	107
BstUI	CGCG	1 cut(s)	1015
BstV1I	GCAGC	2 cut(s)	46, 574
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	2 cut(s)	266, 841
BstXI	CCANNNNNNTGG	1 cut(s)	417
BstYI	RGATCY	2 cut(s)	266, 841
BsuRI	GGCC	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	10
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	310, 958, 977
BtsIMutI	CAGTG	1 cut(s)	616
Cac8I	GCNNGC	7 cut(s)	85, 232, 262, 275, 805, 966, 1008
Cfr13I	GGNCC	3 cut(s)	209, 407, 653
Cfr9I	CCCGGG	1 cut(s)	872
CseI	GACGC	1 cut(s)	1027
Csp6I	GTAC	6 cut(s)	104, 131, 141, 530, 923, 1090
CspCI	CAANNNNNGTGG	2 cut(s)	745, 780
CviAII	CATG	5 cut(s)	64, 101, 179, 417, 985
CviQI	GTAC	6 cut(s)	104, 131, 141, 530, 923, 1090
DdeI	CTNAG	3 cut(s)	200, 624, 1053
DpnI	GATC	6 cut(s)	165, 268, 415, 555, 620, 843
DpnII	GATC	6 cut(s)	163, 266, 413, 553, 618, 841
DrdI	GACNNNNNNGTC	1 cut(s)	864
DseDI	GACNNNNNNGTC	1 cut(s)	864
Eam1104I	CTCTTC	2 cut(s)	241, 320
EarI	CTCTTC	2 cut(s)	241, 320
Eco105I	TACGTA	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	860
Eco47I	GGWCC	2 cut(s)	407, 653
Eco88I	CYCGRG	1 cut(s)	872
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	860
EcoT22I	ATGCAT	1 cut(s)	979
ErhI	CCWWGG	1 cut(s)	860
Esp3I	CGTCTC	1 cut(s)	763
FaeI	CATG	5 cut(s)	67, 104, 182, 420, 988
FatI	CATG	5 cut(s)	63, 100, 178, 416, 984
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	60, 436, 588
FokI	GGATG	3 cut(s)	317, 964, 965
Fsp4HI	GCNGC	3 cut(s)	60, 436, 588
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	3 cut(s)	60, 436, 588
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	4 cut(s)	212, 245, 742, 873
HgaI	GACGC	1 cut(s)	1027
Hin1II	CATG	5 cut(s)	67, 104, 182, 420, 988
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	3 cut(s)	481, 544, 829
HpaII	CCGG	4 cut(s)	212, 245, 742, 873
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	254, 284, 469
Hpy188I	TCNGA	4 cut(s)	171, 203, 625, 1056
Hpy188III	TCNNGA	5 cut(s)	515, 560, 596, 742, 886
Hpy8I	GTNNAC	3 cut(s)	254, 284, 469
HpyCH4III	ACNGT	3 cut(s)	22, 375, 429
HpyCH4IV	ACGT	4 cut(s)	97, 106, 349, 451
HpyCH4V	TGCA	7 cut(s)	12, 273, 490, 734, 977, 988, 1006
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 270, 441, 572, 974, 1012
HpyF3I	CTNAG	3 cut(s)	200, 624, 1053
HpySE526I	ACGT	4 cut(s)	97, 106, 349, 451
Hsp92II	CATG	5 cut(s)	67, 104, 182, 420, 988
Kpn2I	TCCGGA	1 cut(s)	741
KpnI	GGTACC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	6 cut(s)	163, 266, 413, 553, 618, 841
LguI	GCTCTTC	2 cut(s)	241, 320
LmnI	GCTCC	2 cut(s)	343, 493
Lsp1109I	GCAGC	2 cut(s)	46, 574
LweI	GCATC	3 cut(s)	743, 943, 986
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	4 cut(s)	97, 106, 349, 451
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	6 cut(s)	165, 268, 415, 555, 620, 843
MbiI	CCGCTC	1 cut(s)	438
MboI	GATC	6 cut(s)	163, 266, 413, 553, 618, 841
MboII	GAAGA	8 cut(s)	35, 111, 228, 337, 706, 860, 914, 1058
MfeI	CAATTG	1 cut(s)	833
MflI	RGATCY	2 cut(s)	266, 841
MluCI	AATT	3 cut(s)	194, 833, 880
MlyI	GAGTC	2 cut(s)	490, 538
MmeI	TCCRAC	2 cut(s)	385, 1005
MnlI	CCTC	3 cut(s)	99, 209, 295
Mph1103I	ATGCAT	1 cut(s)	979
MroI	TCCGGA	1 cut(s)	741
MseI	TTAA	2 cut(s)	393, 993
MslI	CAYNNNNRTG	1 cut(s)	415
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	4 cut(s)	212, 245, 742, 873
MspR9I	CCNGG	2 cut(s)	873, 874
MunI	CAATTG	1 cut(s)	833
Mva1269I	GAATGC	1 cut(s)	979
MvnI	CGCG	1 cut(s)	1015
MwoI	GCNNNNNNNGC	6 cut(s)	68, 270, 441, 572, 974, 1012
NciI	CCSGG	2 cut(s)	873, 874
NdeII	GATC	6 cut(s)	163, 266, 413, 553, 618, 841
NlaIII	CATG	5 cut(s)	67, 104, 182, 420, 988
NlaIV	GGNNCC	2 cut(s)	132, 210
NsiI	ATGCAT	1 cut(s)	979
NspI	RCATGY	1 cut(s)	988
PciSI	GCTCTTC	2 cut(s)	241, 320
PcsI	WCGNNNNNNNCGW	2 cut(s)	103, 112
PctI	GAATGC	1 cut(s)	979
PfeI	GAWTC	1 cut(s)	829
PkrI	GCNGC	3 cut(s)	61, 437, 589
PleI	GAGTC	2 cut(s)	489, 538
PpsI	GAGTC	2 cut(s)	489, 538
Ppu21I	YACGTR	1 cut(s)	107
PpuMI	RGGWCCY	1 cut(s)	653
PshBI	ATTAAT	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	1080
Psp5II	RGGWCCY	1 cut(s)	653
PspN4I	GGNNCC	2 cut(s)	132, 210
PspPI	GGNCC	3 cut(s)	209, 407, 653
PspPPI	RGGWCCY	1 cut(s)	653
PsrI	GAACNNNNNNTAC	2 cut(s)	100, 132
PsuI	RGATCY	2 cut(s)	266, 841
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	6 cut(s)	105, 132, 142, 531, 924, 1091
RsaNI	GTAC	6 cut(s)	104, 131, 141, 530, 923, 1090
RseI	CAYNNNNRTG	1 cut(s)	415
SapI	GCTCTTC	2 cut(s)	241, 320
SaqAI	TTAA	2 cut(s)	393, 993
SatI	GCNGC	3 cut(s)	60, 436, 588
Sau3AI	GATC	6 cut(s)	163, 266, 413, 553, 618, 841
Sau96I	GGNCC	3 cut(s)	209, 407, 653
ScaI	AGTACT	1 cut(s)	142
SchI	GAGTC	2 cut(s)	490, 538
ScrFI	CCNGG	2 cut(s)	873, 874
SfaNI	GCATC	3 cut(s)	743, 943, 986
SfcI	CTRYAG	2 cut(s)	186, 280
SinI	GGWCC	2 cut(s)	407, 653
SmaI	CCCGGG	1 cut(s)	874
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	439, 698
SmoI	CTYRAG	2 cut(s)	439, 698
SnaBI	TACGTA	1 cut(s)	107
Sse9I	AATT	3 cut(s)	194, 833, 880
SsiI	CCGC	6 cut(s)	128, 153, 264, 436, 684, 1015
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	871, 872
StyI	CCWWGG	1 cut(s)	860
TaaI	ACNGT	3 cut(s)	22, 375, 429
TaiI	ACGT	4 cut(s)	100, 109, 352, 454
TasI	AATT	3 cut(s)	194, 833, 880
TatI	WGTACW	2 cut(s)	140, 922
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	1 cut(s)	829
Tru1I	TTAA	2 cut(s)	393, 993
Tru9I	TTAA	2 cut(s)	393, 993
TscAI	CASTG	1 cut(s)	616
TseI	GCWGC	2 cut(s)	59, 587
TspDTI	ATGAA	4 cut(s)	17, 111, 921, 986
TspMI	CCCGGG	1 cut(s)	872
TspRI	CASTG	1 cut(s)	616
VpaK11BI	GGWCC	2 cut(s)	407, 653
VspI	ATTAAT	1 cut(s)	393
XagI	CCTNNNNNAGG	1 cut(s)	203
XapI	RAATTY	2 cut(s)	194, 880
XceI	RCATGY	1 cut(s)	988
XmaI	CCCGGG	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	283
XspI	CTAG	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.