Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Reverse (-)

72499067 .. 72501814

Gene Structure 2748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG546500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAAGTTGATGAGGATGAGATTTATTGGACCCAGAAGAGCAAAAGCAGTAAGGAGCAACGTGGTTCAACTCGTGTGATACCGCAGTCAGTTCAATGTTTTATTAATGCTATGGTTGGACCACGATCATGGACAGGACTGTTTAGCCGCTCAAGCAACAAACGTAATGGGAAGTATGTTGACTACCCTTTGAGTCCTATGCAGGAGCAGAGACTTTTGGGGCTTCAAGAACGACTACAAGTACCTTTTGACGAGACTCGCCCTGATCATCAAGAAGCCTTGAAAGCACTCTGGTATGCTGCCTTTCCAGATGTTGCTATCAGTGGTTTGATCTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTCCTAACCCATCTACTGACTTTAGGAGTTGCGGTGTTATTGCGCTTGAGAACTTGCTTTTCTTCGCCAGAACCTATCCTGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCGTGAAGTTATTAGGAGAAGATGAAGCTGCTTTTGATGTACTGTTCTGTATAGCTTTTGAAATGGTGGATGCTCAATGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGATGTTCTGCAAGCAACGCGGACGCAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGAATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

269

Amino Acids

31.05

Weight (kDa)

5.65

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	75 - 239	1.8e-51	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	792
AasI	GACNNNNNNGTC	1 cut(s)	576
AccBSI	CCGCTC	1 cut(s)	150
AccII	CGCG	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	453
AciI	CCGC	4 cut(s)	83, 148, 396, 727
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	592
AfaI	GTAC	3 cut(s)	243, 636, 803
AgsI	TTSAA	7 cut(s)	69, 95, 227, 283, 469, 545, 656
AluBI	AGCT	3 cut(s)	623, 650, 788
AluI	AGCT	3 cut(s)	623, 650, 788
Alw26I	GTCTC	3 cut(s)	205, 248, 475
AlwI	GGATC	1 cut(s)	561
Ama87I	CYCGRG	1 cut(s)	584
Aor13HI	TCCGGA	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	299, 623
ApoI	RAATTY	1 cut(s)	592
AseI	ATTAAT	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	3 cut(s)	30, 119, 365
AsuC2I	CCSGG	2 cut(s)	585, 586
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	3 cut(s)	30, 119, 365
BaeI	ACNNNNGTAYC	2 cut(s)	71, 104
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	286, 610
BccI	CCATC	2 cut(s)	346, 382
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	2 cut(s)	585, 586
BcoDI	GTCTC	3 cut(s)	205, 248, 475
BisI	GCNGC	3 cut(s)	148, 300, 624
BlsI	GCNGC	3 cut(s)	149, 301, 625
Bme1390I	CCNGG	2 cut(s)	585, 586
Bme18I	GGWCC	3 cut(s)	30, 119, 365
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	3 cut(s)	30, 119, 365
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	585, 586
BmsI	GCATC	3 cut(s)	455, 655, 698
BpiI	GAAGAC	1 cut(s)	572
BpuEI	CTTGAG	2 cut(s)	136, 431
BpuMI	CCSGG	2 cut(s)	585, 586
BsaJI	CCNNGG	2 cut(s)	572, 584
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bse1I	ACTGG	1 cut(s)	805
Bse3DI	GCAATG	1 cut(s)	347
BseAI	TCCGGA	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	572, 584
BseGI	GGATG	3 cut(s)	22, 670, 689
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	2 cut(s)	327, 779
BseNI	ACTGG	1 cut(s)	805
BseXI	GCAGC	2 cut(s)	286, 610
Bsh1236I	CGCG	1 cut(s)	727
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	2 cut(s)	454, 585
BsmAI	GTCTC	3 cut(s)	205, 248, 475
BsmBI	CGTCTC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	691
BsoBI	CYCGRG	1 cut(s)	584
Bsp13I	TCCGGA	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	125, 265, 330, 553
BspACI	CCGC	4 cut(s)	83, 148, 396, 727
BspCNI	CTCAG	2 cut(s)	328, 778
BspEI	TCCGGA	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	727
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	561
BspQI	GCTCTTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	805
BssECI	CCNNGG	2 cut(s)	572, 584
BssMI	GATC	4 cut(s)	125, 265, 330, 553
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	572
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	141, 639
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	517, 678, 720
BstDEI	CTNAG	2 cut(s)	336, 765
BstF5I	GGATG	3 cut(s)	22, 670, 689
BstFNI	CGCG	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	4 cut(s)	128, 268, 333, 556
BstMAI	GTCTC	3 cut(s)	205, 248, 475
BstMBI	GATC	4 cut(s)	125, 265, 330, 553
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 284, 686, 724
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	583, 584
BstUI	CGCG	1 cut(s)	727
BstV1I	GCAGC	2 cut(s)	286, 610
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	553
BtsCI	GGATG	3 cut(s)	22, 670, 689
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	3 cut(s)	517, 678, 720
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	3 cut(s)	30, 119, 365
Cfr9I	CCCGGG	1 cut(s)	584
CseI	GACGC	1 cut(s)	739
Csp6I	GTAC	3 cut(s)	242, 635, 802
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	2 cut(s)	129, 697
CviJI	RGCY	7 cut(s)	147, 223, 278, 623, 650, 676, 788
CviKI_1	RGCY	7 cut(s)	147, 223, 278, 623, 650, 676, 788
CviQI	GTAC	3 cut(s)	242, 635, 802
DdeI	CTNAG	2 cut(s)	336, 765
DpnI	GATC	4 cut(s)	127, 267, 332, 555
DpnII	GATC	4 cut(s)	125, 265, 330, 553
DrdI	GACNNNNNNGTC	1 cut(s)	576
DseDI	GACNNNNNNGTC	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	572
Eco47I	GGWCC	3 cut(s)	30, 119, 365
Eco88I	CYCGRG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	572
EcoT22I	ATGCAT	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	572
Esp3I	CGTCTC	1 cut(s)	475
FaeI	CATG	2 cut(s)	132, 700
FatI	CATG	2 cut(s)	128, 696
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	148, 300, 624
FokI	GGATG	3 cut(s)	29, 676, 677
Fsp4HI	GCNGC	3 cut(s)	148, 300, 624
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	3 cut(s)	148, 300, 624
HapII	CCGG	2 cut(s)	454, 585
HgaI	GACGC	1 cut(s)	739
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	132, 700
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	193, 256, 541
HpaII	CCGG	2 cut(s)	454, 585
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	337, 768
Hpy188III	TCNNGA	5 cut(s)	227, 272, 308, 454, 598
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	141, 639
HpyCH4IV	ACGT	2 cut(s)	61, 163
HpyCH4V	TGCA	5 cut(s)	202, 446, 689, 700, 718
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 284, 686, 724
HpyF3I	CTNAG	2 cut(s)	336, 765
HpySE526I	ACGT	2 cut(s)	61, 163
Hsp92II	CATG	2 cut(s)	132, 700
HspAI	GCGC	1 cut(s)	407
Kpn2I	TCCGGA	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	125, 265, 330, 553
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	55, 205
Lsp1109I	GCAGC	2 cut(s)	286, 610
LweI	GCATC	3 cut(s)	455, 655, 698
MaeII	ACGT	2 cut(s)	61, 163
MalI	GATC	4 cut(s)	127, 267, 332, 555
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	4 cut(s)	125, 265, 330, 553
MboII	GAAGA	5 cut(s)	49, 418, 572, 626, 770
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	2 cut(s)	545, 592
MlyI	GAGTC	2 cut(s)	202, 250
MmeI	TCCRAC	2 cut(s)	97, 717
MnlI	CCTC	1 cut(s)	7
Mph1103I	ATGCAT	1 cut(s)	691
MroI	TCCGGA	1 cut(s)	453
MseI	TTAA	2 cut(s)	105, 705
MslI	CAYNNNNRTG	1 cut(s)	127
MspI	CCGG	2 cut(s)	454, 585
MspR9I	CCNGG	2 cut(s)	585, 586
MunI	CAATTG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	691
MvnI	CGCG	1 cut(s)	727
MwoI	GCNNNNNNNGC	4 cut(s)	153, 284, 686, 724
NciI	CCSGG	2 cut(s)	585, 586
NdeII	GATC	4 cut(s)	125, 265, 330, 553
NlaIII	CATG	2 cut(s)	132, 700
NlaIV	GGNNCC	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	541
PkrI	GCNGC	3 cut(s)	149, 301, 625
PleI	GAGTC	2 cut(s)	201, 250
PpsI	GAGTC	2 cut(s)	201, 250
PpuMI	RGGWCCY	1 cut(s)	365
PshBI	ATTAAT	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	792
Psp5II	RGGWCCY	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	3 cut(s)	30, 119, 365
PspPPI	RGGWCCY	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	3 cut(s)	243, 636, 803
RsaNI	GTAC	3 cut(s)	242, 635, 802
RseI	CAYNNNNRTG	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	105, 705
SatI	GCNGC	3 cut(s)	148, 300, 624
Sau3AI	GATC	4 cut(s)	125, 265, 330, 553
Sau96I	GGNCC	3 cut(s)	30, 119, 365
SchI	GAGTC	2 cut(s)	202, 250
ScrFI	CCNGG	2 cut(s)	585, 586
SfaNI	GCATC	3 cut(s)	455, 655, 698
SinI	GGWCC	3 cut(s)	30, 119, 365
SmaI	CCCGGG	1 cut(s)	586
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	151, 410
SmoI	CTYRAG	2 cut(s)	151, 410
Sse9I	AATT	2 cut(s)	545, 592
SsiI	CCGC	4 cut(s)	83, 148, 396, 727
StyD4I	CCNGG	2 cut(s)	583, 584
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	2 cut(s)	141, 639
TaiI	ACGT	2 cut(s)	64, 166
TasI	AATT	2 cut(s)	545, 592
TatI	WGTACW	1 cut(s)	634
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	2 cut(s)	105, 705
Tru9I	TTAA	2 cut(s)	105, 705
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	2 cut(s)	299, 623
TspDTI	ATGAA	3 cut(s)	17, 633, 698
TspMI	CCCGGG	1 cut(s)	584
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	3 cut(s)	30, 119, 365
VspI	ATTAAT	1 cut(s)	105
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	1 cut(s)	700
XmaI	CCCGGG	1 cut(s)	584
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.