Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002924

Physical Location & Seq

Genomic Coordinates Reverse (-)

23088462 .. 23091767

Gene Structure 3306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G235700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTTGGACCACGATCATGGACAGGACTGTTTACCCGCTCAAGCAACAAACGAAATGAGAAGCATGGTGACTACTCTTTGAGTCCTCTTCAGGAACAGAGACTTTTGAGGCTTCAAGCACGATTACAAGTTCCTTTTGATGAGAATCGCCCTGATCATCAAGAAGCCTTGAAAGCATTGTGGCATGCTGCCTTTCCAGATGTTGCTCTGCAAGGTTTAATTTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTTCTAACCCTTCTACTGACTTTAGGGGTTGCGGTTTTATCTCCCTAGAGAACTTGCTGTTTTTCGCCAGGACTTATCCGGTGTCTTTCCGTAGGTTATTGTTCAAGGAAGATGGGAAGCGAGCAACTTGGGAATACCCTTTTGCTGTTGCTGGAATAAACATATCATTTATGTTGATTAAAATGCTGGATCTTTGCTCAGCAAAACCAAGGTGTCTTCCAGGAATAAATTTCGTGAGATTATTAGGAGAAGATGAAGCCGCTTTTGATGTACTATACTGTATAGCTTTTGAAATGGTTGATGCTCAGTGGCTTGCAATGCATGCGTCCTACATGCAGTTTAATGATGTTCTACAAGCAACAAGGACGCAGCTGGAAAGAGAGCTGTCTTTAGAAGATACTCAAAGAATACATGATTTACCAGCTTACAATCTTTTGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

233

Amino Acids

26.87

Weight (kDa)

5.98

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620 AT1G03620
fragaria_vesca	FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080 FvH4_6g45080
malus_domestica	MD09G1089700.v1.1 MD17G1079100.v1.1
prunus_persica	Prupe.3G235700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162481
rosa_laevigata	RLG00000021348
rosa_multiflora	Rmu_sc0004206.1_g000015
rosa_roxburghii	Rroxscaffold_2G00087910
rosa_rugosa	Rorug02G0498100
rosa_samantha	Rh2AG563900 Rh2BG576600 Rh2CG546500 Rh2DG586400
rosa_wichuraiana	Rw2G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	3 cut(s)	37, 285, 513
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	525, 692
AgsI	TTSAA	4 cut(s)	116, 172, 358, 545
AjnI	CCWGG	2 cut(s)	320, 472
AluBI	AGCT	4 cut(s)	539, 625, 637, 677
AluI	AGCT	4 cut(s)	539, 625, 637, 677
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	188, 622
ApoI	RAATTY	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	175, 634
BccI	CCATC	2 cut(s)	235, 359
BciT130I	CCWGG	2 cut(s)	322, 474
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	3 cut(s)	189, 513, 623
BlpI	GCTNAGC	1 cut(s)	451
BlsI	GCNGC	3 cut(s)	190, 514, 624
Bme1390I	CCNGG	2 cut(s)	322, 474
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmrFI	CCNGG	2 cut(s)	322, 474
BmsI	GCATC	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	451
BpuEI	CTTGAG	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	461
BsaWI	WCCGGW	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	694
Bse3DI	GCAATG	2 cut(s)	236, 576
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	322, 474
BseDI	CCNNGG	1 cut(s)	461
BseJI	GATNNNNATC	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	236, 576
BseMII	CTCAG	3 cut(s)	216, 465, 572
BseNI	ACTGG	1 cut(s)	694
BseXI	GCAGC	2 cut(s)	175, 634
BsiSI	CCGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	14, 154, 442
Bsp1720I	GCTNAGC	1 cut(s)	451
BspACI	CCGC	3 cut(s)	37, 285, 513
BspCNI	CTCAG	3 cut(s)	217, 464, 571
BspPI	GGATC	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	236, 576
BsrI	ACTGG	1 cut(s)	694
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	3 cut(s)	14, 154, 442
BssT1I	CCWWGG	1 cut(s)	461
Bst2UI	CCWGG	2 cut(s)	322, 474
Bst4CI	ACNGT	2 cut(s)	30, 533
Bst6I	CTCTTC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	4 cut(s)	186, 375, 567, 576
BstDEI	CTNAG	3 cut(s)	225, 451, 558
BstKTI	GATC	3 cut(s)	17, 157, 445
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	14, 154, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 571, 575
BstNI	CCWGG	2 cut(s)	322, 474
BstNSI	RCATGY	3 cut(s)	188, 578, 589
BstSCI	CCNGG	2 cut(s)	320, 472
BstV1I	GCAGC	2 cut(s)	175, 634
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	442
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	4 cut(s)	186, 375, 567, 576
Cfr13I	GGNCC	1 cut(s)	8
CseI	GACGC	2 cut(s)	567, 628
Csp6I	GTAC	2 cut(s)	524, 691
CviAII	CATG	6 cut(s)	18, 65, 185, 575, 586, 665
CviJI	RGCY	8 cut(s)	112, 167, 512, 539, 565, 625, 637, 677
CviKI_1	RGCY	8 cut(s)	112, 167, 512, 539, 565, 625, 637, 677
CviQI	GTAC	2 cut(s)	524, 691
DdeI	CTNAG	3 cut(s)	225, 451, 558
DpnI	GATC	3 cut(s)	16, 156, 444
DpnII	GATC	3 cut(s)	14, 154, 442
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	461
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	320, 472
EcoT14I	CCWWGG	1 cut(s)	461
EcoT22I	ATGCAT	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	6 cut(s)	21, 68, 188, 578, 589, 668
FatI	CATG	6 cut(s)	17, 64, 184, 574, 585, 664
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	189, 513, 623
Fsp4HI	GCNGC	3 cut(s)	189, 513, 623
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	3 cut(s)	189, 513, 623
HapII	CCGG	1 cut(s)	332
HgaI	GACGC	2 cut(s)	567, 628
Hin1II	CATG	6 cut(s)	21, 68, 188, 578, 589, 668
HinfI	GANTC	2 cut(s)	82, 145
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	92, 161, 197, 487
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	2 cut(s)	30, 533
HpyCH4V	TGCA	4 cut(s)	211, 569, 574, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 571, 575
HpyF3I	CTNAG	3 cut(s)	225, 451, 558
Hsp92II	CATG	6 cut(s)	21, 68, 188, 578, 589, 668
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	14, 154, 442
Lsp1109I	GCAGC	2 cut(s)	175, 634
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	3 cut(s)	16, 156, 444
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	3 cut(s)	14, 154, 442
MboII	GAAGA	5 cut(s)	80, 374, 461, 515, 659
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	2 cut(s)	219, 481
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	2 cut(s)	96, 102
Mph1103I	ATGCAT	1 cut(s)	576
MseI	TTAA	3 cut(s)	218, 432, 594
MslI	CAYNNNNRTG	1 cut(s)	16
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	322, 474
MvaI	CCWGG	2 cut(s)	322, 474
MwoI	GCNNNNNNNGC	3 cut(s)	173, 571, 575
NdeII	GATC	3 cut(s)	14, 154, 442
NlaIII	CATG	6 cut(s)	21, 68, 188, 578, 589, 668
NmuCI	GTSAC	1 cut(s)	68
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	3 cut(s)	188, 578, 589
PaeI	GCATGC	2 cut(s)	188, 578
PfeI	GAWTC	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	3 cut(s)	190, 514, 624
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	320, 472
PspGI	CCWGG	2 cut(s)	320, 472
PspPI	GGNCC	1 cut(s)	8
PsuI	RGATCY	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	2 cut(s)	525, 692
RsaNI	GTAC	2 cut(s)	524, 691
RseI	CAYNNNNRTG	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	218, 432, 594
SatI	GCNGC	3 cut(s)	189, 513, 623
Sau3AI	GATC	3 cut(s)	14, 154, 442
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	322, 474
SetI	ASST	8 cut(s)	217, 256, 350, 467, 541, 627, 639, 679
SfaNI	GCATC	1 cut(s)	544
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SphI	GCATGC	2 cut(s)	188, 578
Sse9I	AATT	2 cut(s)	219, 481
SsiI	CCGC	3 cut(s)	37, 285, 513
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	320, 472
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	2 cut(s)	30, 533
TasI	AATT	2 cut(s)	219, 481
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	3 cut(s)	218, 432, 594
Tru9I	TTAA	3 cut(s)	218, 432, 594
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	2 cut(s)	188, 622
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	3 cut(s)	188, 578, 589
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.