AT1G05070

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010168
Physical Location & Seq
Reverse (-)
1457007 .. 1458802
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05070.1

Sequence Viewer

Length: 555 bp
ATGGCGAGACACACGGCGGCGCTGAAGATCGGGCTAGCTTTACTGGGGCTGAGCATGGCTGGTTACATTCTTGGTCCGCCTCTCTACTGGCATCTCACTGAGGCTTTGGCCGCCGTTTCCGCCTCCTCTTGTCCTTCTTGCCCCTGTGAATGCTCTACCTATTCCGCTGTCACCATTCCCAAAGAGCTCAGTAATGCTTCTTTTGCTGATTGTGCAAAGCACGATCCAGAGGTGAACGAAGACACTGAGAAGAACTATGCTGAACTTCTTACCGAGGAACTGAAGCTGCGTGAAGCAGAATCTTTAGAGAAACACAAACGAGCAGACATGGGGCTATTGGAGGCCAAGAAGGTAACTTCTTCATACCAAAAGGAAGCAGATAAGTGCAACTCGGGTATGGAAACATGCGAAGAAGCTCGAGAAAAAGCAGAATTAGCACTCGCCGAGCAGAAAAAGCTAACATCTAGGTGGGAAGAGAGAGCTCGCCAAAAAGGATGGAGAGAAGGTTCCACCAAGCCAAATGTTAAATCCAAAAGCAATGTTCAGGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

184

Amino Acids

20.26

Weight (kDa)

6.14

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 6 - 168 2.9e-77 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05070 AT2G32580 AT2G32580
fragaria_vesca FvH4_6g42750
malus_domestica MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica Prupe.3G213900_v2.0.a1
pyrus_communis pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis RchiOBHm_Chr2g0158641
rosa_laevigata RLG00000021102
rosa_multiflora Rmu_sc0039916.1_g000001
rosa_roxburghii Rroxscaffold_2G00091150
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana Rw2G044440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 17, 77, 111, 120, 165
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 44, 302
AloI GAACNNNNNNTCC 2 cut(s) 490, 522
AluBI AGCT 6 cut(s) 38, 187, 286, 416, 457, 482
AluI AGCT 6 cut(s) 38, 187, 286, 416, 457, 482
Alw21I GWGCWC 2 cut(s) 189, 484
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 2 cut(s) 391, 417
AoxI GGCC 2 cut(s) 108, 342
ApeKI GCWGC 1 cut(s) 286
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 163, 244
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 2 cut(s) 391, 417
AvaII GGWCC 1 cut(s) 74
BanII GRGCYC 2 cut(s) 189, 484
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 2 cut(s) 189, 484
BbvI GCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 489
BceAI ACGGC 2 cut(s) 30, 98
BfaI CTAG 2 cut(s) 35, 465
BfoI RGCGCY 1 cut(s) 23
BisI GCNGC 3 cut(s) 18, 111, 287
BlpI GCTNAGC 1 cut(s) 50
BlsI GCNGC 3 cut(s) 19, 112, 288
Bme18I GGWCC 1 cut(s) 74
BmeT110I CYCGRG 2 cut(s) 391, 417
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 508
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 100
BmtI GCTAGC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bse1I ACTGG 2 cut(s) 48, 92
Bse3DI GCAATG 1 cut(s) 544
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 500
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 4 cut(s) 41, 90, 202, 237
BseNI ACTGG 2 cut(s) 48, 92
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 273
BshFI GGCC 2 cut(s) 110, 344
BsiHKAI GWGCWC 2 cut(s) 189, 484
BsiHKCI CYCGRG 2 cut(s) 391, 417
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 2 cut(s) 110, 344
BsoBI CYCGRG 2 cut(s) 391, 417
Bsp1286I GDGCHC 2 cut(s) 189, 484
Bsp143I GATC 2 cut(s) 27, 223
Bsp1720I GCTNAGC 1 cut(s) 50
BspACI CCGC 5 cut(s) 17, 77, 111, 120, 165
BspANI GGCC 2 cut(s) 110, 344
BspCNI CTCAG 4 cut(s) 42, 91, 201, 238
BspLI GGNNCC 1 cut(s) 508
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 2 cut(s) 48, 92
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 27, 223
Bst6I CTCTTC 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 36, 484
BstDEI CTNAG 5 cut(s) 50, 99, 188, 246, 552
BstF5I GGATG 1 cut(s) 500
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 2 cut(s) 30, 226
BstMBI GATC 2 cut(s) 27, 223
BstMWI GCNNNNNNNGC 6 cut(s) 110, 119, 203, 212, 434, 454
BstNSI RCATGY 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 246
BsuRI GGCC 2 cut(s) 110, 344
BtsCI GGATG 1 cut(s) 500
BtsIMutI CAGTG 2 cut(s) 96, 243
Cac8I GCNNGC 2 cut(s) 36, 484
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 74
CviAII CATG 3 cut(s) 55, 328, 405
DdeI CTNAG 5 cut(s) 50, 99, 188, 246, 552
DpnI GATC 2 cut(s) 29, 225
DpnII GATC 2 cut(s) 27, 223
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
EciI GGCGGA 2 cut(s) 66, 109
Ecl136II GAGCTC 2 cut(s) 187, 482
Eco24I GRGCYC 2 cut(s) 189, 484
Eco47I GGWCC 1 cut(s) 74
Eco53kI GAGCTC 2 cut(s) 187, 482
Eco57I CTGAAG 2 cut(s) 44, 302
Eco88I CYCGRG 2 cut(s) 391, 417
EcoICRI GAGCTC 2 cut(s) 187, 482
EcoT38I GRGCYC 2 cut(s) 189, 484
FaeI CATG 3 cut(s) 58, 331, 408
FaiI YATR 6 cut(s) 56, 258, 329, 364, 398, 406
FatI CATG 3 cut(s) 54, 327, 404
Fnu4HI GCNGC 3 cut(s) 18, 111, 287
FokI GGATG 1 cut(s) 507
FriOI GRGCYC 2 cut(s) 189, 484
Fsp4HI GCNGC 3 cut(s) 18, 111, 287
FspBI CTAG 2 cut(s) 35, 465
GlaI GCGC 1 cut(s) 21
GluI GCNGC 3 cut(s) 18, 111, 287
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 110, 344
HhaI GCGC 1 cut(s) 22
Hin1II CATG 3 cut(s) 58, 331, 408
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 1 cut(s) 299
HphI GGTGA 2 cut(s) 163, 244
Hpy166II GTNNAC 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 227, 419
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 144, 343, 497
HpyCH4V TGCA 2 cut(s) 215, 387
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 119, 203, 212, 434, 454
HpyF3I CTNAG 5 cut(s) 50, 99, 188, 246, 552
Hsp92II CATG 3 cut(s) 58, 331, 408
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 2 cut(s) 27, 223
LpnPI CCDG 6 cut(s) 29, 45, 73, 157, 240, 530
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 100
MaeI CTAG 2 cut(s) 35, 465
MaeIII GTNAC 3 cut(s) 62, 169, 352
MalI GATC 2 cut(s) 29, 225
MboI GATC 2 cut(s) 27, 223
MboII GAAGA 6 cut(s) 37, 251, 262, 351, 422, 485
MhlI GDGCHC 2 cut(s) 189, 484
MluCI AATT 1 cut(s) 431
MnlI CCTC 7 cut(s) 90, 94, 133, 136, 223, 268, 334
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 466
MspA1I CMGCKG 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 155
MwoI GCNNNNNNNGC 6 cut(s) 110, 119, 203, 212, 434, 454
NdeII GATC 2 cut(s) 27, 223
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 3 cut(s) 58, 331, 408
NlaIV GGNNCC 1 cut(s) 508
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 1 cut(s) 408
PaeR7I CTCGAG 1 cut(s) 417
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 3 cut(s) 19, 112, 288
Psp124BI GAGCTC 2 cut(s) 189, 484
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 466
SacI GAGCTC 2 cut(s) 189, 484
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 3 cut(s) 18, 111, 287
Sau3AI GATC 2 cut(s) 27, 223
Sau96I GGNCC 1 cut(s) 74
SduI GDGCHC 2 cut(s) 189, 484
SfaNI GCATC 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
Sse9I AATT 1 cut(s) 431
SsiI CCGC 5 cut(s) 17, 77, 111, 120, 165
SspMI CTAG 2 cut(s) 35, 465
SstI GAGCTC 2 cut(s) 189, 484
TaqI TCGA 1 cut(s) 418
TasI AATT 1 cut(s) 431
TauI GCSGC 2 cut(s) 20, 113
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 2 cut(s) 103, 250
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 2 cut(s) 103, 250
VpaK11BI GGWCC 1 cut(s) 74
XceI RCATGY 1 cut(s) 408
XhoI CTCGAG 1 cut(s) 417
XspI CTAG 2 cut(s) 35, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.