Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039916.1

Orthogroup ID

OG0010168

Physical Location & Seq

Genomic Coordinates Reverse (-)

383 .. 1836

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039916.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggcgatgagtccggcggtgctgaaggcggggctggtcatagtgggcctctgcatagccggctacattctcggcccacctctctactggcacttcatggagggcttggccgccgtctcccactcttcttcttcttcttattcctgccctccttgcacctgcgactgctcttctcagccgctcctctccatccccattggactcagcaacatttcgtttgcagactgtgcaaagcatgatccagaggtaaatgaggatactgaaaagaactttgtggatcttttgactgaggaattgaagcttcgggaagctcaagctttggagaatcagcaaaaagccgatataactctactggaggctaagaagattgcatcccagtatcaaaaggaagctgacaagtgcagttcagggatggaaacatgtgaagaagcaagggagaaagctgaagcaacattagaggctcagaggaaaatgacagcaacgtgggagcttagggctcgtcagaagggatggaaagaaggaatgaccaagtctactgctcagacacaaggaaatgtccagactgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1068

Protein Analysis

189

Amino Acids

20.62

Weight (kDa)

5.17

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05070 AT2G32580 AT2G32580
fragaria_vesca	FvH4_6g42750
malus_domestica	MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica	Prupe.3G213900_v2.0.a1
pyrus_communis	pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis	RchiOBHm_Chr2g0158641
rosa_laevigata	RLG00000021102
rosa_multiflora	Rmu_sc0039916.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091150
rosa_rugosa	Rorug02G0471000
rosa_samantha	Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana	Rw2G044440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	533
AciI	CCGC	4 cut(s)	17, 29, 111, 179
AclWI	GGATC	2 cut(s)	233, 285
AcoI	YGGCCR	1 cut(s)	108
AcuI	CTGAAG	2 cut(s)	44, 465
AflIII	ACRYGT	1 cut(s)	419
AgsI	TTSAA	1 cut(s)	298
AluBI	AGCT	6 cut(s)	301, 311, 317, 392, 443, 490
AluI	AGCT	6 cut(s)	301, 311, 317, 392, 443, 490
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	233, 285
AoxI	GGCC	3 cut(s)	46, 73, 108
AspS9I	GGNCC	2 cut(s)	46, 74
BanII	GRGCYC	1 cut(s)	499
BccI	CCATC	3 cut(s)	197, 406, 504
BceAI	ACGGC	1 cut(s)	98
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	111, 179
BlsI	GCNGC	2 cut(s)	112, 180
BmgT120I	GGNCC	2 cut(s)	46, 74
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	374
Bpu10I	CCTNAGC	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	92, 357, 376
BseGI	GGATG	4 cut(s)	189, 371, 417, 515
BseMII	CTCAG	5 cut(s)	188, 217, 279, 476, 554
BseNI	ACTGG	3 cut(s)	92, 357, 376
BseRI	GAGGAG	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	3 cut(s)	48, 75, 110
BsiSI	CCGG	2 cut(s)	14, 60
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	3 cut(s)	48, 75, 110
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	2 cut(s)	238, 277
BspACI	CCGC	4 cut(s)	17, 29, 111, 179
BspANI	GGCC	3 cut(s)	48, 75, 110
BspCNI	CTCAG	5 cut(s)	187, 216, 280, 475, 553
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	2 cut(s)	233, 285
BspQI	GCTCTTC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	92, 357, 376
BssAI	RCCGGY	1 cut(s)	59
BssMI	GATC	2 cut(s)	238, 277
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	130, 175
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	7 cut(s)	174, 203, 288, 360, 462, 491, 540
BstF5I	GGATG	4 cut(s)	189, 371, 417, 515
BstKTI	GATC	2 cut(s)	241, 280
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	238, 277
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 153, 227
BstNSI	RCATGY	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	48, 75, 110
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	189, 371, 417, 515
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	46, 74
CviAII	CATG	3 cut(s)	97, 236, 420
DdeI	CTNAG	7 cut(s)	174, 203, 288, 360, 462, 491, 540
DpnI	GATC	2 cut(s)	240, 279
DpnII	GATC	2 cut(s)	238, 277
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	130, 175
EarI	CTCTTC	2 cut(s)	130, 175
Eco24I	GRGCYC	1 cut(s)	499
Eco57I	CTGAAG	2 cut(s)	44, 465
EcoT38I	GRGCYC	1 cut(s)	499
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	3 cut(s)	100, 239, 423
FaiI	YATR	6 cut(s)	41, 56, 98, 237, 344, 421
FatI	CATG	3 cut(s)	96, 235, 419
FauI	CCCGC	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	533
Fnu4HI	GCNGC	2 cut(s)	111, 179
FokI	GGATG	4 cut(s)	176, 358, 424, 522
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	2 cut(s)	111, 179
GluI	GCNGC	2 cut(s)	111, 179
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	3 cut(s)	48, 75, 110
HapII	CCGG	2 cut(s)	14, 60
Hin1II	CATG	3 cut(s)	100, 239, 423
HindIII	AAGCTT	2 cut(s)	299, 315
HinfI	GANTC	3 cut(s)	10, 201, 325
HpaII	CCGG	2 cut(s)	14, 60
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	3 cut(s)	465, 504, 543
Hpy188III	TCNNGA	3 cut(s)	242, 305, 559
Hpy8I	GTNNAC	1 cut(s)	534
HpyAV	CCTTC	3 cut(s)	19, 499, 512
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	6 cut(s)	54, 156, 221, 230, 371, 402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 153, 227
HpyF3I	CTNAG	7 cut(s)	174, 203, 288, 360, 462, 491, 540
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	3 cut(s)	100, 239, 423
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	238, 277
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	2 cut(s)	186, 487
LweI	GCATC	1 cut(s)	380
MaeII	ACGT	1 cut(s)	482
MalI	GATC	2 cut(s)	240, 279
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	2 cut(s)	238, 277
MboII	GAAGA	7 cut(s)	117, 120, 123, 126, 162, 376, 437
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	1 cut(s)	293
MlyI	GAGTC	2 cut(s)	19, 195
MroNI	GCCGGC	1 cut(s)	59
MspI	CCGG	2 cut(s)	14, 60
MwoI	GCNNNNNNNGC	3 cut(s)	60, 153, 227
NaeI	GCCGGC	1 cut(s)	61
NdeII	GATC	2 cut(s)	238, 277
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	3 cut(s)	100, 239, 423
NmeAIII	GCCGAG	1 cut(s)	51
NspI	RCATGY	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	167
PciI	ACATGT	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	175
PdiI	GCCGGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	325
PflFI	GACNNNGTC	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	112, 180
PleI	GAGTC	2 cut(s)	18, 195
PpsI	GAGTC	2 cut(s)	18, 195
PscI	ACATGT	1 cut(s)	419
PspPI	GGNCC	2 cut(s)	46, 74
PsuI	RGATCY	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	529
SapI	GCTCTTC	1 cut(s)	175
SatI	GCNGC	2 cut(s)	111, 179
Sau3AI	GATC	2 cut(s)	238, 277
Sau96I	GGNCC	2 cut(s)	46, 74
SchI	GAGTC	2 cut(s)	19, 195
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	4 cut(s)	17, 29, 111, 179
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	485
TasI	AATT	1 cut(s)	293
TauI	GCSGC	2 cut(s)	113, 181
TfiI	GAWTC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	85
Tth111I	GACNNNGTC	1 cut(s)	529
XceI	RCATGY	1 cut(s)	423
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.