MD17G1100600.v1.1

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010168
Physical Location & Seq
Forward (+)
8537886 .. 8539952
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1100600.v1.1.491

Sequence Viewer

Length: 576 bp
ATGGCGACGAGTCCGGCAGTGCTGAAGGCGGGGCTGGTGATAGTTGGGCTGTGCATAGCCGGGTACATAGTGGGCCCACCTCTATACTGGCACTTCGTGGAGGGCTTAGCCGCCGTCTCCCACTCTTCTTCTTCTTCCTCCTCTTTCGTTTGCCCTCTCTGCACCTGCGATTGCTCTTCTCAGCCTCTCCTCTCCATTCCCATTGGACTCAGCAACATTTCATTTGCAGACTGTGCAAAGCATGACCCAGAGGTGAACGAGGACACTGAAAAGAACTTTGTGGATCTTTTGACTGAGGAGTTGAAGCTTCGGGAAGCTGAAGCTTTGGAAAGTCAGCAACGAGCTGATATGGCTCTGCTGGAGGCGAAGAAGATTGCATCCCAGTATCAAAAGGAAGCAGACAAGTGCAGTTCAGGGATGGAAACATGTGAAGAAGCAAGGGAGAAAGCTGAAGCAACGTTAGAGGCGCAGCGGAAACAGACTGCACTATGGGAGCTTAGGGCTCGTCAGAGAGGGTGGAAAGAAGGGCTTACAAGGTCTAACACTCAGACGCAAGGAAATGTCCAGACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

192

Amino Acids

20.84

Weight (kDa)

5.07

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 6 - 176 4.7e-82 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05070 AT2G32580 AT2G32580
fragaria_vesca FvH4_6g42750
malus_domestica MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica Prupe.3G213900_v2.0.a1
pyrus_communis pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis RchiOBHm_Chr2g0158641
rosa_laevigata RLG00000021102
rosa_multiflora Rmu_sc0039916.1_g000001
rosa_roxburghii Rroxscaffold_2G00091150
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana Rw2G044440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 173
AciI CCGC 3 cut(s) 29, 111, 472
AclI AACGTT 1 cut(s) 458
AclWI GGATC 1 cut(s) 291
AcuI CTGAAG 3 cut(s) 44, 339, 471
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 1 cut(s) 304
AluBI AGCT 6 cut(s) 307, 317, 323, 344, 449, 496
AluI AGCT 6 cut(s) 307, 317, 323, 344, 449, 496
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 291
AoxI GGCC 1 cut(s) 73
ApaI GGGCCC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 469
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 2 cut(s) 73, 74
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 49, 265
BaeGI GKGCMC 1 cut(s) 77
BanII GRGCYC 2 cut(s) 77, 505
BbvI GCAGC 1 cut(s) 481
BccI CCATC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 2 cut(s) 111, 470
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 2 cut(s) 112, 471
Bme1390I CCNGG 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 73, 74
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 376
BmsI GCATC 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 1 cut(s) 497
Bpu1102I GCTNAGC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 92, 382
BseGI GGATG 2 cut(s) 377, 423
BseMII CTCAG 4 cut(s) 194, 223, 285, 560
BseNI ACTGG 2 cut(s) 92, 382
BseRI GAGGAG 3 cut(s) 130, 179, 311
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 1 cut(s) 481
BsgI GTGCAG 3 cut(s) 145, 427, 468
BshFI GGCC 1 cut(s) 75
BsiSI CCGG 2 cut(s) 14, 60
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 1 cut(s) 75
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 77, 505
Bsp143I GATC 1 cut(s) 283
Bsp1720I GCTNAGC 1 cut(s) 106
BspACI CCGC 3 cut(s) 29, 111, 472
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 4 cut(s) 193, 222, 286, 559
BspLI GGNNCC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 291
BspQI GCTCTTC 1 cut(s) 181
BsrI ACTGG 2 cut(s) 92, 382
BssMI GATC 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 233, 571
Bst6I CTCTTC 2 cut(s) 130, 181
BstAPI GCANNNNNTGC 1 cut(s) 233
BstDEI CTNAG 6 cut(s) 106, 180, 209, 294, 497, 546
BstF5I GGATG 2 cut(s) 377, 423
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 159, 233, 350
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 59
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 2 cut(s) 377, 423
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 24, 264
BveI ACCTGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 2 cut(s) 73, 74
CseI GACGC 1 cut(s) 559
Csp6I GTAC 1 cut(s) 64
CviAII CATG 2 cut(s) 242, 426
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 6 cut(s) 106, 180, 209, 294, 497, 546
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DraIII CACNNNGTG 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 130, 181
EarI CTCTTC 2 cut(s) 130, 181
Eco24I GRGCYC 2 cut(s) 77, 505
Eco57I CTGAAG 3 cut(s) 44, 339, 471
EcoT38I GRGCYC 2 cut(s) 77, 505
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 2 cut(s) 245, 429
FaiI YATR 7 cut(s) 56, 68, 85, 243, 350, 427, 490
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FatI CATG 2 cut(s) 241, 425
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 111, 470
FokI GGATG 2 cut(s) 364, 430
FriOI GRGCYC 2 cut(s) 77, 505
Fsp4HI GCNGC 2 cut(s) 111, 470
GlaI GCGC 1 cut(s) 468
GluI GCNGC 2 cut(s) 111, 470
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 1 cut(s) 75
HapII CCGG 2 cut(s) 14, 60
HgaI GACGC 1 cut(s) 559
HhaI GCGC 1 cut(s) 469
Hin1II CATG 2 cut(s) 245, 429
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 2 cut(s) 305, 321
HinfI GANTC 2 cut(s) 10, 207
HpaII CCGG 2 cut(s) 14, 60
HphI GGTGA 2 cut(s) 49, 265
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 510, 549
Hpy188III TCNNGA 2 cut(s) 311, 565
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 19, 518
HpyCH4III ACNGT 2 cut(s) 233, 571
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 7 cut(s) 54, 162, 227, 236, 377, 408, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 233, 350
HpyF3I CTNAG 6 cut(s) 106, 180, 209, 294, 497, 546
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 2 cut(s) 245, 429
HspAI GCGC 1 cut(s) 467
Kzo9I GATC 1 cut(s) 283
LguI GCTCTTC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 493
LpnPI CCDG 9 cut(s) 20, 27, 73, 73, 178, 261, 344, 395, 399
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 386
MaeII ACGT 1 cut(s) 458
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 8 cut(s) 117, 120, 123, 126, 168, 379, 382, 443
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 77, 505
MlyI GAGTC 2 cut(s) 19, 201
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 2 cut(s) 14, 60
MspR9I CCNGG 1 cut(s) 61
MwoI GCNNNNNNNGC 3 cut(s) 159, 233, 350
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 283
NlaIII CATG 2 cut(s) 245, 429
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 173
PciI ACATGT 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 181
PkrI GCNGC 2 cut(s) 112, 471
PleI GAGTC 2 cut(s) 18, 201
PpsI GAGTC 2 cut(s) 18, 201
PscI ACATGT 1 cut(s) 425
Psp1406I AACGTT 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 75
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 2 cut(s) 73, 74
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 181
SatI GCNGC 2 cut(s) 111, 470
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 73, 74
SchI GAGTC 2 cut(s) 19, 201
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 2 cut(s) 77, 505
SfaNI GCATC 1 cut(s) 386
SsiI CCGC 3 cut(s) 29, 111, 472
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 233, 571
TaiI ACGT 1 cut(s) 461
TauI GCSGC 1 cut(s) 113
TscAI CASTG 2 cut(s) 24, 271
TseI GCWGC 1 cut(s) 469
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 2 cut(s) 24, 271
XceI RCATGY 1 cut(s) 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.