pycom09g03460

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010168
Physical Location & Seq
Forward (+)
2562456 .. 2564251
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03460.1

Sequence Viewer

Length: 573 bp
ATGGCGACGAGTCAGGCGGTGCTGAAGGCGGGGCTGGTGATAGTTGGGCTGTGCATAGCCGGGTACATAGTGGGGCCGCCTCTATACTGGCACTTCATGGAGGGCTTAGCCGCCGTCTCCCACTCTTCTTCTTCCTCCCCTTCCGCTTGCCCTCCTTGCACCTGCGATTGCTCTTCTCAGCCTCTCCTCTCCATCCCCATTGGACTCAGCAACATTTCCTTTGCAGACTGTGCAAAGCATGATCCAGAGGTGAATGAAGACACTGAGAAGAACTTTGTGGATCTTTTGACCGAGGAGTTGAAGCTTAGGGAAGCTGAAGCTTTGGAAACTCAGCAACGAGCTGATATGGCTCTACTAGAGGCCAAGAAGATTGCATCCCAGTATCAAAAGGAAGCAGACAAGTGCAGTTCAGGGATGGAAACATGTGAAGAAGCAAGGGAGAAAGCTGAAGCAACATTAGAGGCGCAGCGGAAACAGACAGTGTTATGGGAGCTCAGGGCTCGTCAGAGAGGGTGGAAAGAAGGGCTTACAAAGTCTAATACTCAGACGCAAGGAAATGTCCAGACTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

191

Amino Acids

20.73

Weight (kDa)

5.07

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 6 - 175 1.8e-83 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05070 AT2G32580 AT2G32580
fragaria_vesca FvH4_6g42750
malus_domestica MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica Prupe.3G213900_v2.0.a1
pyrus_communis pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis RchiOBHm_Chr2g0158641
rosa_laevigata RLG00000021102
rosa_multiflora Rmu_sc0039916.1_g000001
rosa_roxburghii Rroxscaffold_2G00091150
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana Rw2G044440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 170
AciI CCGC 6 cut(s) 17, 29, 77, 111, 144, 469
AclWI GGATC 2 cut(s) 236, 288
AcuI CTGAAG 3 cut(s) 44, 336, 468
AfaI GTAC 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 6 cut(s) 304, 314, 320, 341, 446, 493
AluI AGCT 6 cut(s) 304, 314, 320, 341, 446, 493
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 2 cut(s) 236, 288
AoxI GGCC 2 cut(s) 74, 360
ApeKI GCWGC 1 cut(s) 466
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 49, 262
BanII GRGCYC 2 cut(s) 495, 502
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 478
BccI CCATC 2 cut(s) 200, 409
BceAI ACGGC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 170
BisI GCNGC 3 cut(s) 77, 111, 467
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 3 cut(s) 78, 112, 468
Bme1390I CCNGG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 264
Bpu10I CCTNAGC 2 cut(s) 305, 494
Bpu1102I GCTNAGC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 92, 379
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 192, 374, 420
BseMII CTCAG 6 cut(s) 191, 220, 255, 344, 508, 557
BseNI ACTGG 2 cut(s) 92, 379
BseRI GAGGAG 2 cut(s) 176, 308
BseXI GCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 424
BshFI GGCC 2 cut(s) 76, 362
BsiHKAI GWGCWC 1 cut(s) 495
BsiSI CCGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 2 cut(s) 76, 362
Bsp1286I GDGCHC 2 cut(s) 495, 502
Bsp143I GATC 2 cut(s) 241, 280
Bsp1720I GCTNAGC 1 cut(s) 106
BspACI CCGC 6 cut(s) 17, 29, 77, 111, 144, 469
BspANI GGCC 2 cut(s) 76, 362
BspCNI CTCAG 6 cut(s) 190, 219, 256, 343, 507, 556
BspLI GGNNCC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 2 cut(s) 236, 288
BspQI GCTCTTC 1 cut(s) 178
BsrI ACTGG 2 cut(s) 92, 379
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 2 cut(s) 241, 280
Bst4CI ACNGT 3 cut(s) 230, 481, 568
Bst6I CTCTTC 2 cut(s) 130, 178
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 8 cut(s) 106, 177, 206, 264, 305, 330, 494, 543
BstF5I GGATG 3 cut(s) 192, 374, 420
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 2 cut(s) 244, 283
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 2 cut(s) 241, 280
BstMWI GCNNNNNNNGC 3 cut(s) 156, 230, 347
BstNSI RCATGY 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 76, 362
BtsCI GGATG 3 cut(s) 192, 374, 420
BtsIMutI CAGTG 2 cut(s) 261, 486
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 1 cut(s) 556
Csp6I GTAC 1 cut(s) 64
CviAII CATG 3 cut(s) 97, 239, 423
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 8 cut(s) 106, 177, 206, 264, 305, 330, 494, 543
DpnI GATC 2 cut(s) 243, 282
DpnII GATC 2 cut(s) 241, 280
Eam1104I CTCTTC 2 cut(s) 130, 178
EarI CTCTTC 2 cut(s) 130, 178
Ecl136II GAGCTC 1 cut(s) 493
Eco24I GRGCYC 2 cut(s) 495, 502
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 3 cut(s) 44, 336, 468
EcoICRI GAGCTC 1 cut(s) 493
EcoT38I GRGCYC 2 cut(s) 495, 502
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 3 cut(s) 100, 242, 426
FaiI YATR 8 cut(s) 56, 68, 85, 98, 240, 347, 424, 487
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 3 cut(s) 96, 238, 422
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 77, 111, 467
FokI GGATG 3 cut(s) 179, 361, 427
FriOI GRGCYC 2 cut(s) 495, 502
Fsp4HI GCNGC 3 cut(s) 77, 111, 467
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 465
GluI GCNGC 3 cut(s) 77, 111, 467
HaeIII GGCC 2 cut(s) 76, 362
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 556
HhaI GCGC 1 cut(s) 466
Hin1II CATG 3 cut(s) 100, 242, 426
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HindIII AAGCTT 2 cut(s) 302, 318
HinfI GANTC 2 cut(s) 10, 204
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 49, 262
Hpy188I TCNGA 2 cut(s) 507, 546
Hpy188III TCNNGA 2 cut(s) 245, 562
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 19, 150, 515
HpyCH4III ACNGT 3 cut(s) 230, 481, 568
HpyCH4V TGCA 6 cut(s) 54, 159, 224, 233, 374, 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 230, 347
HpyF3I CTNAG 8 cut(s) 106, 177, 206, 264, 305, 330, 494, 543
Hsp92II CATG 3 cut(s) 100, 242, 426
HspAI GCGC 1 cut(s) 464
Kzo9I GATC 2 cut(s) 241, 280
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 490
LpnPI CCDG 8 cut(s) 20, 73, 73, 175, 258, 392, 396, 481
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 1 cut(s) 383
MaeI CTAG 1 cut(s) 356
MalI GATC 2 cut(s) 243, 282
MboI GATC 2 cut(s) 241, 280
MboII GAAGA 8 cut(s) 117, 120, 123, 165, 269, 280, 379, 440
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 495, 502
MlyI GAGTC 2 cut(s) 19, 198
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 61
MwoI GCNNNNNNNGC 3 cut(s) 156, 230, 347
NciI CCSGG 1 cut(s) 61
NdeII GATC 2 cut(s) 241, 280
NlaIII CATG 3 cut(s) 100, 242, 426
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 1 cut(s) 426
PaqCI CACCTGC 1 cut(s) 170
PciI ACATGT 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 78, 112, 468
PleI GAGTC 2 cut(s) 18, 198
PpsI GAGTC 2 cut(s) 18, 198
PscI ACATGT 1 cut(s) 422
Psp124BI GAGCTC 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 74
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 495
SapI GCTCTTC 1 cut(s) 178
SatI GCNGC 3 cut(s) 77, 111, 467
Sau3AI GATC 2 cut(s) 241, 280
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 2 cut(s) 19, 198
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 2 cut(s) 495, 502
SetI ASST 8 cut(s) 164, 252, 306, 316, 322, 343, 448, 495
SfaNI GCATC 1 cut(s) 383
SsiI CCGC 6 cut(s) 17, 29, 77, 111, 144, 469
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 3 cut(s) 230, 481, 568
TaqII GACCGA 1 cut(s) 305
TauI GCSGC 2 cut(s) 79, 113
TscAI CASTG 2 cut(s) 268, 486
TseI GCWGC 1 cut(s) 466
TspDTI ATGAA 2 cut(s) 85, 270
TspRI CASTG 2 cut(s) 268, 486
XceI RCATGY 1 cut(s) 426
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.