Rh2DG559600

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010168
Physical Location & Seq
Reverse (-)
78867028 .. 78867427
400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG559600.1

Sequence Viewer

Length: 369 bp
ATGAAAAGTTGGCTACATGAAGACTGTGCAAAGCATGATCCAGAGGTGAATGAGGATACTGAAAAGAACTTTGTGGATCTTTTGACTGAGGAATTGAAGCTTCGGGAAGCTCAAGCTTTGGAGAATCAGCAAAAAGCTGATATAACTCTACTGGAGGCTAAGAAGATTGCATCCCAGTATCAAAAGGAAGCTGACAAGTGCAGTTCAGGGATGGAAACATGTGAAGAAGCAAGGGAGAAAGCTGAAGCAACATTAGAGGCTCAGAGGAAAATGACAGCAACGTGGGAGCTTAGGGCTCGTCAGAAGGGATGGAAAGAAGGAATGACCAAGTCTACTGCTCAGACGCAAGGAAATGTCCAGACTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

122

Amino Acids

13.92

Weight (kDa)

5.18

Isoelectric Point (pI)

24.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 7 - 107 1.1e-50 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05070 AT2G32580 AT2G32580
fragaria_vesca FvH4_6g42750
malus_domestica MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica Prupe.3G213900_v2.0.a1
pyrus_communis pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis RchiOBHm_Chr2g0158641
rosa_laevigata RLG00000021102
rosa_multiflora Rmu_sc0039916.1_g000001
rosa_roxburghii Rroxscaffold_2G00091150
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana Rw2G044440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 332
AclWI GGATC 2 cut(s) 32, 84
AcuI CTGAAG 1 cut(s) 264
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 7 cut(s) 100, 110, 116, 137, 191, 242, 289
AluI AGCT 7 cut(s) 100, 110, 116, 137, 191, 242, 289
AlwI GGATC 2 cut(s) 32, 84
AsuHPI GGTGA 1 cut(s) 58
BanII GRGCYC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 2 cut(s) 205, 303
BciVI GTATCC 1 cut(s) 49
BfuI GTATCC 1 cut(s) 49
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 179
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 96
Bse1I ACTGG 2 cut(s) 156, 175
BseGI GGATG 3 cut(s) 170, 216, 314
BseMII CTCAG 3 cut(s) 78, 275, 353
BseNI ACTGG 2 cut(s) 156, 175
BsgI GTGCAG 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 2 cut(s) 37, 76
BspCNI CTCAG 3 cut(s) 79, 274, 352
BspPI GGATC 2 cut(s) 32, 84
BsrI ACTGG 2 cut(s) 156, 175
BssMI GATC 2 cut(s) 37, 76
Bst4CI ACNGT 1 cut(s) 26
BstDEI CTNAG 5 cut(s) 87, 159, 261, 290, 339
BstF5I GGATG 3 cut(s) 170, 216, 314
BstKTI GATC 2 cut(s) 40, 79
BstMBI GATC 2 cut(s) 37, 76
BstNSI RCATGY 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuI GTATCC 1 cut(s) 49
BtsCI GGATG 3 cut(s) 170, 216, 314
CseI GACGC 1 cut(s) 352
CviAII CATG 3 cut(s) 17, 35, 219
DdeI CTNAG 5 cut(s) 87, 159, 261, 290, 339
DpnI GATC 2 cut(s) 39, 78
DpnII GATC 2 cut(s) 37, 76
Eco24I GRGCYC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 298
FaeI CATG 3 cut(s) 20, 38, 222
FaiI YATR 4 cut(s) 18, 36, 143, 220
FatI CATG 3 cut(s) 16, 34, 218
FblI GTMKAC 1 cut(s) 332
FokI GGATG 3 cut(s) 157, 223, 321
FriOI GRGCYC 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 173
HgaI GACGC 1 cut(s) 352
Hin1II CATG 3 cut(s) 20, 38, 222
HindIII AAGCTT 2 cut(s) 98, 114
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 3 cut(s) 264, 303, 342
Hpy188III TCNNGA 3 cut(s) 41, 104, 358
Hpy8I GTNNAC 1 cut(s) 333
HpyAV CCTTC 2 cut(s) 298, 311
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 3 cut(s) 29, 170, 201
HpyF3I CTNAG 5 cut(s) 87, 159, 261, 290, 339
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 3 cut(s) 20, 38, 222
Kzo9I GATC 2 cut(s) 37, 76
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 4 cut(s) 54, 137, 188, 192
LweI GCATC 1 cut(s) 179
MaeII ACGT 1 cut(s) 281
MalI GATC 2 cut(s) 39, 78
MboI GATC 2 cut(s) 37, 76
MboII GAAGA 3 cut(s) 32, 175, 236
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 1 cut(s) 92
MnlI CCTC 6 cut(s) 37, 46, 82, 148, 250, 258
NdeII GATC 2 cut(s) 37, 76
NlaIII CATG 3 cut(s) 20, 38, 222
NspI RCATGY 1 cut(s) 222
PciI ACATGT 1 cut(s) 218
PfeI GAWTC 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 328
PscI ACATGT 1 cut(s) 218
PsuI RGATCY 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 328
Sau3AI GATC 2 cut(s) 37, 76
SduI GDGCHC 1 cut(s) 298
SetI ASST 9 cut(s) 48, 102, 112, 118, 139, 193, 244, 284, 291
SfaNI GCATC 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 1 cut(s) 92
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 284
TasI AATT 1 cut(s) 92
TfiI GAWTC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 17, 33
Tth111I GACNNNGTC 1 cut(s) 328
XceI RCATGY 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.