Rw2G044440

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010168
Physical Location & Seq
Reverse (-)
71091731 .. 71093203
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G044440.1

Sequence Viewer

Length: 573 bp
ATGGCGATGAGTCCGGCGGTGCTGAAGGCCGGGCTGGTCATGGTGGGCCTCTGCATAGCCGGCTACATTCTCGGCCCACCTCTCTACTGGCACTTCGTGGAGGGCTTGGCCGCCGTCTCCCGCTCTTCTTCTTCTTCTTCTTATTCCTGCCCTCCTTGCACCTGCGACTGCTCTTCTCAGCCGCTCCTCTCCATCCCCATTGGACTCAGCAACATTTCGTTTGCAGACTGTGCAAAGCATGATCCAGAGGTGAATGAGGATACTGAAAAGAACTTTGTGGATCTTTTGACTGAGGAATTGAAGCTTCGGGAAGCTCAAGCTTTGGAGAATCAGCAAAAAGCTGATATAACTCTACTGGAGGCTAAGAAGATTGCATCCCAGTATCAAAAGGAAGCTGACAAGTGCAGTTCAGGGATGGAAACATGTGAAGAAGCAAGGGAGAAAGCTGAAGCAACATTAGAGGCTCAGAGGAAAATGACAGCAACGTGGGAGCTTAGGGCTCGTCAGAAGGGATGGAAAGAAGGAATGACCAAGTCTACTGCTCAGACGCAAGGAAATGTCCAGACTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

190

Amino Acids

20.71

Weight (kDa)

5.19

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 6 - 175 4.4e-83 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05070 AT2G32580 AT2G32580
fragaria_vesca FvH4_6g42750
malus_domestica MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica Prupe.3G213900_v2.0.a1
pyrus_communis pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis RchiOBHm_Chr2g0158641
rosa_laevigata RLG00000021102
rosa_multiflora Rmu_sc0039916.1_g000001
rosa_roxburghii Rroxscaffold_2G00091150
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana Rw2G044440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 170
AccBSI CCGCTC 2 cut(s) 123, 184
AccI GTMKAC 1 cut(s) 536
AciI CCGC 4 cut(s) 17, 111, 121, 182
AclWI GGATC 2 cut(s) 236, 288
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 44, 468
AdeI CACNNNGTG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 7 cut(s) 304, 314, 320, 341, 395, 446, 493
AluI AGCT 7 cut(s) 304, 314, 320, 341, 395, 446, 493
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 2 cut(s) 236, 288
AoxI GGCC 4 cut(s) 27, 46, 73, 108
AspS9I GGNCC 2 cut(s) 46, 74
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 262
BanII GRGCYC 1 cut(s) 502
BccI CCATC 3 cut(s) 200, 409, 507
BceAI ACGGC 1 cut(s) 98
BciVI GTATCC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 2 cut(s) 111, 182
BlsI GCNGC 2 cut(s) 112, 183
Bme1390I CCNGG 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 46, 74
BmrFI CCNGG 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 92, 360, 379
BseGI GGATG 4 cut(s) 192, 374, 420, 518
BseMII CTCAG 5 cut(s) 191, 220, 282, 479, 557
BseNI ACTGG 3 cut(s) 92, 360, 379
BseRI GAGGAG 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 424
BshFI GGCC 4 cut(s) 29, 48, 75, 110
BsiSI CCGG 3 cut(s) 14, 30, 60
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 4 cut(s) 29, 48, 75, 110
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 2 cut(s) 241, 280
BspACI CCGC 4 cut(s) 17, 111, 121, 182
BspANI GGCC 4 cut(s) 29, 48, 75, 110
BspCNI CTCAG 5 cut(s) 190, 219, 283, 478, 556
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 2 cut(s) 236, 288
BspQI GCTCTTC 2 cut(s) 130, 178
BsrBI CCGCTC 2 cut(s) 123, 184
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 3 cut(s) 92, 360, 379
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 2 cut(s) 241, 280
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 2 cut(s) 130, 178
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 7 cut(s) 177, 206, 291, 363, 465, 494, 543
BstF5I GGATG 4 cut(s) 192, 374, 420, 518
BstKTI GATC 2 cut(s) 244, 283
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 2 cut(s) 241, 280
BstMWI GCNNNNNNNGC 3 cut(s) 60, 156, 230
BstNSI RCATGY 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 4 cut(s) 29, 48, 75, 110
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 4 cut(s) 192, 374, 420, 518
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 46, 74
CseI GACGC 1 cut(s) 556
CviAII CATG 3 cut(s) 40, 239, 423
DdeI CTNAG 7 cut(s) 177, 206, 291, 363, 465, 494, 543
DpnI GATC 2 cut(s) 243, 282
DpnII GATC 2 cut(s) 241, 280
DraIII CACNNNGTG 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 130, 178
EarI CTCTTC 2 cut(s) 130, 178
Eco24I GRGCYC 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 44, 468
EcoT38I GRGCYC 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 3 cut(s) 43, 242, 426
FaiI YATR 5 cut(s) 41, 56, 240, 347, 424
FatI CATG 3 cut(s) 39, 238, 422
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 2 cut(s) 111, 182
FokI GGATG 4 cut(s) 179, 361, 427, 525
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 2 cut(s) 111, 182
GluI GCNGC 2 cut(s) 111, 182
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 4 cut(s) 29, 48, 75, 110
HapII CCGG 3 cut(s) 14, 30, 60
HgaI GACGC 1 cut(s) 556
Hin1II CATG 3 cut(s) 43, 242, 426
HindIII AAGCTT 2 cut(s) 302, 318
HinfI GANTC 3 cut(s) 10, 204, 328
HpaII CCGG 3 cut(s) 14, 30, 60
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 537
Hpy188I TCNGA 3 cut(s) 468, 507, 546
Hpy188III TCNNGA 3 cut(s) 245, 308, 562
Hpy8I GTNNAC 1 cut(s) 537
HpyAV CCTTC 3 cut(s) 19, 502, 515
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 6 cut(s) 54, 159, 224, 233, 374, 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 156, 230
HpyF3I CTNAG 7 cut(s) 177, 206, 291, 363, 465, 494, 543
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 3 cut(s) 43, 242, 426
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 241, 280
LguI GCTCTTC 2 cut(s) 130, 178
LmnI GCTCC 2 cut(s) 189, 490
LweI GCATC 1 cut(s) 383
MaeII ACGT 1 cut(s) 485
MalI GATC 2 cut(s) 243, 282
MbiI CCGCTC 2 cut(s) 123, 184
MboI GATC 2 cut(s) 241, 280
MboII GAAGA 8 cut(s) 117, 120, 123, 126, 129, 165, 379, 440
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 1 cut(s) 296
MlyI GAGTC 2 cut(s) 19, 198
MroNI GCCGGC 1 cut(s) 59
MspI CCGG 3 cut(s) 14, 30, 60
MspR9I CCNGG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 60, 156, 230
NaeI GCCGGC 1 cut(s) 61
NciI CCSGG 1 cut(s) 31
NdeII GATC 2 cut(s) 241, 280
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 43, 242, 426
NmeAIII GCCGAG 1 cut(s) 51
NspI RCATGY 1 cut(s) 426
PaqCI CACCTGC 1 cut(s) 170
PciI ACATGT 1 cut(s) 422
PciSI GCTCTTC 2 cut(s) 130, 178
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 532
PkrI GCNGC 2 cut(s) 112, 183
PleI GAGTC 2 cut(s) 18, 198
PpsI GAGTC 2 cut(s) 18, 198
PscI ACATGT 1 cut(s) 422
PspPI GGNCC 2 cut(s) 46, 74
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 532
SapI GCTCTTC 2 cut(s) 130, 178
SatI GCNGC 2 cut(s) 111, 182
Sau3AI GATC 2 cut(s) 241, 280
Sau96I GGNCC 2 cut(s) 46, 74
SchI GAGTC 2 cut(s) 19, 198
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 502
SfaNI GCATC 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 1 cut(s) 296
SsiI CCGC 4 cut(s) 17, 111, 121, 182
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 488
TasI AATT 1 cut(s) 296
TauI GCSGC 2 cut(s) 113, 184
TfiI GAWTC 1 cut(s) 328
Tth111I GACNNNGTC 1 cut(s) 532
XceI RCATGY 1 cut(s) 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.