Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010168

Physical Location & Seq

Genomic Coordinates Reverse (-)

21749206 .. 21752248

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G213900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGATGAGTCCGGCAGTGTTGAAGGCGGGGCTGGTGATAGTTGGGGTTTGCATAGCCGGGTACATAGTGGGCCCACCTCTCTACTGGCACTTCATGGAGGGCTTAGCTGCCGTCTCCCACTCTTCATCTTCTTCTTCCTTATCTTCTTGCCCTCCTTGCACCTGTGATTGCTCTTCTCAGCCTCTCCTCTCCATCCCCATTGGACTCAGCAACATTTCATTTGCAGATTGTGCAAAGCATGATCCAGAGGTAAGTGAGGACACCGAGAAAAATTTTGTGGATCTTTTGACTGAAGAGTTGAAGCTTCGGGAAGCTGAAGCTTTAGAAAATCAACAACGAGCTGATATGGCTCTGCTGGAGGCTAAGAAGATTGCATCCCAGTATCAGAAGGAAGCAGACAAGTGCAATTCAGGGATGGAAACATGTGAAGAAGCAAGGGAGAAAGCTGAAGCAACATTGGAGGCACAGAGGAAACTGACAGCAACATGGGAGCTTAGGGCTCGTCAAAGAGGATGGAAAGAAGGGGTTACAAATTCTAATACTCAGACGCAAGGAAATGTTCAGACTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1068

Protein Analysis

192

Amino Acids

20.77

Weight (kDa)

4.96

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05070 AT2G32580 AT2G32580
fragaria_vesca	FvH4_6g42750
malus_domestica	MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica	Prupe.3G213900_v2.0.a1
pyrus_communis	pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis	RchiOBHm_Chr2g0158641
rosa_laevigata	RLG00000021102
rosa_multiflora	Rmu_sc0039916.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091150
rosa_rugosa	Rorug02G0471000
rosa_samantha	Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana	Rw2G044440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	239, 291
AcsI	RAATTY	2 cut(s)	274, 535
AcuI	CTGAAG	3 cut(s)	315, 339, 471
AfaI	GTAC	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	25, 304
AluBI	AGCT	7 cut(s)	110, 307, 317, 323, 344, 449, 496
AluI	AGCT	7 cut(s)	110, 307, 317, 323, 344, 449, 496
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	239, 291
AoxI	GGCC	1 cut(s)	73
ApaI	GGGCCC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	274, 535
AspS9I	GGNCC	2 cut(s)	73, 74
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	77, 505
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	3 cut(s)	203, 412, 510
BceAI	ACGGC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	111
BlpI	GCTNAGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	73, 74
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	1 cut(s)	386
BmuI	ACTGGG	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	497
Bpu1102I	GCTNAGC	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	92, 382
BseGI	GGATG	4 cut(s)	195, 377, 423, 521
BseMII	CTCAG	3 cut(s)	194, 223, 560
BseNI	ACTGG	2 cut(s)	92, 382
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	14, 60
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	75
Bsp120I	GGGCCC	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	77, 505
Bsp143I	GATC	2 cut(s)	244, 283
Bsp1720I	GCTNAGC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	3 cut(s)	193, 222, 559
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	239, 291
BspQI	GCTCTTC	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	92, 382
BssMI	GATC	2 cut(s)	244, 283
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	3 cut(s)	130, 181, 291
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstDEI	CTNAG	6 cut(s)	106, 180, 209, 366, 497, 546
BstF5I	GGATG	4 cut(s)	195, 377, 423, 521
BstKTI	GATC	2 cut(s)	247, 286
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	244, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 233, 350
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	195, 377, 423, 521
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	73, 74
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	4 cut(s)	97, 242, 426, 489
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	6 cut(s)	106, 180, 209, 366, 497, 546
DpnI	GATC	2 cut(s)	246, 285
DpnII	GATC	2 cut(s)	244, 283
Eam1104I	CTCTTC	3 cut(s)	130, 181, 291
EarI	CTCTTC	3 cut(s)	130, 181, 291
Eco24I	GRGCYC	2 cut(s)	77, 505
Eco57I	CTGAAG	3 cut(s)	315, 339, 471
EcoT38I	GRGCYC	2 cut(s)	77, 505
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	4 cut(s)	100, 245, 429, 492
FaiI	YATR	7 cut(s)	56, 68, 98, 243, 350, 427, 490
FatI	CATG	4 cut(s)	96, 241, 425, 488
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	4 cut(s)	182, 364, 430, 528
FriOI	GRGCYC	2 cut(s)	77, 505
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	2 cut(s)	14, 60
HgaI	GACGC	1 cut(s)	559
Hin1II	CATG	4 cut(s)	100, 245, 429, 492
HindIII	AAGCTT	2 cut(s)	305, 321
HinfI	GANTC	2 cut(s)	10, 207
HpaII	CCGG	2 cut(s)	14, 60
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	390, 549, 567
Hpy188III	TCNNGA	2 cut(s)	248, 311
HpyAV	CCTTC	3 cut(s)	19, 385, 518
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	6 cut(s)	54, 162, 227, 236, 377, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 233, 350
HpyF3I	CTNAG	6 cut(s)	106, 180, 209, 366, 497, 546
Hsp92II	CATG	4 cut(s)	100, 245, 429, 492
Kzo9I	GATC	2 cut(s)	244, 283
LguI	GCTCTTC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	493
LpnPI	CCDG	9 cut(s)	20, 27, 73, 73, 178, 261, 344, 395, 399
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	2 cut(s)	246, 285
MboI	GATC	2 cut(s)	244, 283
MboII	GAAGA	9 cut(s)	117, 123, 126, 129, 138, 168, 308, 382, 443
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	77, 505
MluCI	AATT	3 cut(s)	274, 409, 535
MlyI	GAGTC	2 cut(s)	19, 201
MspI	CCGG	2 cut(s)	14, 60
MspR9I	CCNGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	3 cut(s)	159, 233, 350
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	244, 283
NlaIII	CATG	4 cut(s)	100, 245, 429, 492
NlaIV	GGNNCC	1 cut(s)	75
NspI	RCATGY	1 cut(s)	429
PciI	ACATGT	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	18, 201
PpsI	GAGTC	2 cut(s)	18, 201
PscI	ACATGT	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	75
PspOMI	GGGCCC	1 cut(s)	73
PspPI	GGNCC	2 cut(s)	73, 74
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	181
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	244, 283
Sau96I	GGNCC	2 cut(s)	73, 74
SchI	GAGTC	2 cut(s)	19, 201
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	77, 505
SfaNI	GCATC	1 cut(s)	386
Sse9I	AATT	3 cut(s)	274, 409, 535
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	571
TasI	AATT	3 cut(s)	274, 409, 535
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	85, 117, 210
TspRI	CASTG	1 cut(s)	24
XapI	RAATTY	2 cut(s)	274, 535
XceI	RCATGY	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.