MD09G1063300.v1.1

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010168
Physical Location & Seq
Reverse (-)
4331788 .. 4333478
1691 bp
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UTR
Exon/CDS
Intron
MD09G1063300.v1.1.491

Sequence Viewer

Length: 147 bp
ATGGCTCTGCTGGAGGCTAAGAAGATTGCATCCCAGTATCAAAAGGAAGCAGACAAGTGCAGTTCAGGGATGGAAACATGTGAAGAAGCAAGGGAGAAAGGAAGGGATGAAAATATTGTCGTCGGTGCTTCCTACCTTTTCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

49

Amino Acids

5.39

Weight (kDa)

5.29

Isoelectric Point (pI)

22.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 1 - 34 3.7e-17 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05070 AT2G32580 AT2G32580
fragaria_vesca FvH4_6g42750
malus_domestica MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica Prupe.3G213900_v2.0.a1
pyrus_communis pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis RchiOBHm_Chr2g0158641
rosa_laevigata RLG00000021102
rosa_multiflora Rmu_sc0039916.1_g000001
rosa_roxburghii Rroxscaffold_2G00091150
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana Rw2G044440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 77
BccI CCATC 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 34
BseGI GGATG 3 cut(s) 29, 75, 112
BseNI ACTGG 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 79
BsrI ACTGG 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 3 cut(s) 29, 75, 112
BstNSI RCATGY 1 cut(s) 81
BtsCI GGATG 3 cut(s) 29, 75, 112
CviAII CATG 1 cut(s) 78
CviJI RGCY 2 cut(s) 5, 17
CviKI_1 RGCY 2 cut(s) 5, 17
DdeI CTNAG 1 cut(s) 18
FaeI CATG 1 cut(s) 81
FaiI YATR 1 cut(s) 79
FatI CATG 1 cut(s) 77
FokI GGATG 3 cut(s) 16, 82, 119
GsuI CTGGAG 1 cut(s) 32
Hin1II CATG 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 29, 60
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 1 cut(s) 81
LpnPI CCDG 2 cut(s) 47, 51
LweI GCATC 1 cut(s) 38
MboII GAAGA 2 cut(s) 34, 95
MnlI CCTC 1 cut(s) 7
NlaIII CATG 1 cut(s) 81
NspI RCATGY 1 cut(s) 81
PciI ACATGT 1 cut(s) 77
PscI ACATGT 1 cut(s) 77
SetI ASST 1 cut(s) 138
SfaNI GCATC 1 cut(s) 38
SgeI CNNG 6 cut(s) 23, 46, 67, 78, 90, 102
SspI AATATT 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 123
XceI RCATGY 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.