Rh2CG520500

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010168
Physical Location & Seq
Reverse (-)
69442903 .. 69448209
5307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG520500.1

Sequence Viewer

Length: 576 bp
ATGGCGATGAGTCCGGCGGTGCTGAAGGCGGGGCTGGTCATAGTGGGCCTCTGCATAGCCGGCTACATTCTCGGCCCACCTCTCTACTGGCACTTCATGGAGGGCTTGGCCGCCGTCTCCCACTCTTCTTCTTCTTCTTCTTCTTATTCCTGCCCTCCTTGCACCTGCGACTGCTCTTCTCAGCCGCTCCTCTCCATCCCCATTGGACTCAGCAACATTTCGTTTGCAGACTGTGCAAAGCATGATCCAGAGGTGAATGAGGATACTGAAAAGAACTTTGTGGATCTTTTGACTGAGGAATTGAAGCTTCGGGAAGCTCAAGCTTTGGAGAATCAGCAAAAAGCTGATATAACCCTACTGGAGGCTAAGAAGATTGCATCCCAGTATCAAAAGGAAGCTGACAAGTGCAGTTCAGGGATGGAAACATGTGAAGAAGCAAGGGAGAAAGCTGAAGCAACATTAGAGGCTCAGAGGAAAATGACAGCAACGTGGGAGCTTAGGGCTCGTCAGAAGGGATGGAAAGAAGGAATGACCAAGTCTACTGCTCAGACGCAAGGAAATGTCCAGACTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

191

Amino Acids

20.79

Weight (kDa)

5.17

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 6 - 176 3.1e-83 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05070 AT2G32580 AT2G32580
fragaria_vesca FvH4_6g42750
malus_domestica MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica Prupe.3G213900_v2.0.a1
pyrus_communis pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis RchiOBHm_Chr2g0158641
rosa_laevigata RLG00000021102
rosa_multiflora Rmu_sc0039916.1_g000001
rosa_roxburghii Rroxscaffold_2G00091150
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana Rw2G044440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 187
AccI GTMKAC 1 cut(s) 539
AciI CCGC 4 cut(s) 17, 29, 111, 185
AclWI GGATC 2 cut(s) 239, 291
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 44, 471
AfiI CCNNNNNNNGG 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 1 cut(s) 304
AluBI AGCT 7 cut(s) 307, 317, 323, 344, 398, 449, 496
AluI AGCT 7 cut(s) 307, 317, 323, 344, 398, 449, 496
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 2 cut(s) 239, 291
AoxI GGCC 3 cut(s) 46, 73, 108
AspS9I GGNCC 2 cut(s) 46, 74
AsuHPI GGTGA 1 cut(s) 265
BanII GRGCYC 1 cut(s) 505
BccI CCATC 3 cut(s) 203, 412, 510
BceAI ACGGC 1 cut(s) 98
BciVI GTATCC 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 256
BisI GCNGC 2 cut(s) 111, 185
BlsI GCNGC 2 cut(s) 112, 186
BmgT120I GGNCC 2 cut(s) 46, 74
BmrI ACTGGG 1 cut(s) 376
BmsI GCATC 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 92, 363, 382
BseGI GGATG 4 cut(s) 195, 377, 423, 521
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 5 cut(s) 194, 223, 285, 482, 560
BseNI ACTGG 3 cut(s) 92, 363, 382
BseRI GAGGAG 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 427
BshFI GGCC 3 cut(s) 48, 75, 110
BsiSI CCGG 2 cut(s) 14, 60
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 3 cut(s) 48, 75, 110
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 2 cut(s) 244, 283
BspACI CCGC 4 cut(s) 17, 29, 111, 185
BspANI GGCC 3 cut(s) 48, 75, 110
BspCNI CTCAG 5 cut(s) 193, 222, 286, 481, 559
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 2 cut(s) 239, 291
BspQI GCTCTTC 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 3 cut(s) 92, 363, 382
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 2 cut(s) 244, 283
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 2 cut(s) 130, 181
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 7 cut(s) 180, 209, 294, 366, 468, 497, 546
BstENI CCTNNNNNAGG 1 cut(s) 359
BstF5I GGATG 4 cut(s) 195, 377, 423, 521
BstKTI GATC 2 cut(s) 247, 286
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 2 cut(s) 244, 283
BstMWI GCNNNNNNNGC 3 cut(s) 60, 159, 233
BstNSI RCATGY 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 3 cut(s) 48, 75, 110
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 4 cut(s) 195, 377, 423, 521
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 46, 74
CseI GACGC 1 cut(s) 559
CviAII CATG 3 cut(s) 97, 242, 426
DdeI CTNAG 7 cut(s) 180, 209, 294, 366, 468, 497, 546
DpnI GATC 2 cut(s) 246, 285
DpnII GATC 2 cut(s) 244, 283
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 130, 181
EarI CTCTTC 2 cut(s) 130, 181
Eco24I GRGCYC 1 cut(s) 505
Eco57I CTGAAG 2 cut(s) 44, 471
EcoNI CCTNNNNNAGG 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 505
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 3 cut(s) 100, 245, 429
FaiI YATR 6 cut(s) 41, 56, 98, 243, 350, 427
FatI CATG 3 cut(s) 96, 241, 425
FauI CCCGC 1 cut(s) 22
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 2 cut(s) 111, 185
FokI GGATG 4 cut(s) 182, 364, 430, 528
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 2 cut(s) 111, 185
GluI GCNGC 2 cut(s) 111, 185
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 3 cut(s) 48, 75, 110
HapII CCGG 2 cut(s) 14, 60
HgaI GACGC 1 cut(s) 559
Hin1II CATG 3 cut(s) 100, 245, 429
HindIII AAGCTT 2 cut(s) 305, 321
HinfI GANTC 3 cut(s) 10, 207, 331
HpaII CCGG 2 cut(s) 14, 60
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 540
Hpy188I TCNGA 3 cut(s) 471, 510, 549
Hpy188III TCNNGA 3 cut(s) 248, 311, 565
Hpy8I GTNNAC 1 cut(s) 540
HpyAV CCTTC 3 cut(s) 19, 505, 518
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 6 cut(s) 54, 162, 227, 236, 377, 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 159, 233
HpyF3I CTNAG 7 cut(s) 180, 209, 294, 366, 468, 497, 546
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 3 cut(s) 100, 245, 429
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 244, 283
LguI GCTCTTC 1 cut(s) 181
LmnI GCTCC 2 cut(s) 192, 493
LweI GCATC 1 cut(s) 386
MaeII ACGT 1 cut(s) 488
MalI GATC 2 cut(s) 246, 285
MbiI CCGCTC 1 cut(s) 187
MboI GATC 2 cut(s) 244, 283
MboII GAAGA 9 cut(s) 117, 120, 123, 126, 129, 132, 168, 382, 443
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 1 cut(s) 299
MlyI GAGTC 2 cut(s) 19, 201
MroNI GCCGGC 1 cut(s) 59
MspI CCGG 2 cut(s) 14, 60
MwoI GCNNNNNNNGC 3 cut(s) 60, 159, 233
NaeI GCCGGC 1 cut(s) 61
NdeII GATC 2 cut(s) 244, 283
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 100, 245, 429
NmeAIII GCCGAG 1 cut(s) 51
NspI RCATGY 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 173
PciI ACATGT 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 331
PflFI GACNNNGTC 1 cut(s) 535
PkrI GCNGC 2 cut(s) 112, 186
PleI GAGTC 2 cut(s) 18, 201
PpsI GAGTC 2 cut(s) 18, 201
PscI ACATGT 1 cut(s) 425
PspPI GGNCC 2 cut(s) 46, 74
PsuI RGATCY 1 cut(s) 283
PsyI GACNNNGTC 1 cut(s) 535
SapI GCTCTTC 1 cut(s) 181
SatI GCNGC 2 cut(s) 111, 185
Sau3AI GATC 2 cut(s) 244, 283
Sau96I GGNCC 2 cut(s) 46, 74
SchI GAGTC 2 cut(s) 19, 201
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 1 cut(s) 299
SsiI CCGC 4 cut(s) 17, 29, 111, 185
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 491
TasI AATT 1 cut(s) 299
TauI GCSGC 2 cut(s) 113, 187
TfiI GAWTC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 85
Tth111I GACNNNGTC 1 cut(s) 535
XagI CCTNNNNNAGG 1 cut(s) 359
XceI RCATGY 1 cut(s) 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.