Rh2BG550000

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010168
Physical Location & Seq
Reverse (-)
75868241 .. 75869717
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG550000.1

Sequence Viewer

Length: 546 bp
ATGGCGATGAGTCCGGCGGTGCTGAAGGCGGGGCTGGTCATAGTGGGCCTCTGCATAGCCGGCTACATTCTCGGCCCACCTCTCTACTGGCACTTCATGGAGGGCTTGGCCGCCGTCTCCCACTCTTCTTCTTCTTCTTATTCCTGCCCTCCTTGCACCTGCGACTGCTCTTCTCAGCCGCTCCTCTCCATCCCCATTGACTGTGCAAAGCATGATCCAGAGGTAAATGAGGATACTGAAAAGAACTTTGTGGATCTTTTGACTGAGGAATTGAAGCTTCGGGAAGCTCAAGCTTTGGAGAATCAGCAAAAAGCCGATATAACTCTACTGGAGGCTAAGAAGATTGCATCCCAGTATCAAAAGGAAGCTGACAAGTGCAGTTCAGGGATGGAAACATGTGAAGAAGCAAGGGAGAAAGCTGAAGCAACATTAGAGGCTCAGAGGAAAATGACAGCAACGTGGGAGCTTAGGGCCCGTCAGAAGGGATGGAAAGAAGGAATGACCAAGTCTACTGCTCAGACGCAAGGAAATGTCCAGACTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

181

Amino Acids

19.83

Weight (kDa)

5.17

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 6 - 166 3.1e-75 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05070 AT2G32580 AT2G32580
fragaria_vesca FvH4_6g42750
malus_domestica MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica Prupe.3G213900_v2.0.a1
pyrus_communis pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis RchiOBHm_Chr2g0158641
rosa_laevigata RLG00000021102
rosa_multiflora Rmu_sc0039916.1_g000001
rosa_roxburghii Rroxscaffold_2G00091150
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana Rw2G044440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 509
AciI CCGC 4 cut(s) 17, 29, 111, 179
AclWI GGATC 2 cut(s) 209, 261
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 44, 441
AfiI CCNNNNNNNGG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 1 cut(s) 274
AluBI AGCT 6 cut(s) 277, 287, 293, 368, 419, 466
AluI AGCT 6 cut(s) 277, 287, 293, 368, 419, 466
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 2 cut(s) 209, 261
AoxI GGCC 4 cut(s) 46, 73, 108, 471
ApaI GGGCCC 1 cut(s) 475
AspS9I GGNCC 4 cut(s) 46, 74, 471, 472
BaeGI GKGCMC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 475
BccI CCATC 3 cut(s) 197, 382, 480
BceAI ACGGC 1 cut(s) 98
BciVI GTATCC 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 167
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 2 cut(s) 111, 179
BlsI GCNGC 2 cut(s) 112, 180
BmgT120I GGNCC 4 cut(s) 46, 74, 471, 472
BmiI GGNNCC 1 cut(s) 473
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 92, 333, 352
BseGI GGATG 4 cut(s) 189, 347, 393, 491
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMII CTCAG 4 cut(s) 188, 255, 452, 530
BseNI ACTGG 3 cut(s) 92, 333, 352
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 475
BsgI GTGCAG 1 cut(s) 397
BshFI GGCC 4 cut(s) 48, 75, 110, 473
BsiSI CCGG 2 cut(s) 14, 60
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 4 cut(s) 48, 75, 110, 473
Bsp120I GGGCCC 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 2 cut(s) 214, 253
BspACI CCGC 4 cut(s) 17, 29, 111, 179
BspANI GGCC 4 cut(s) 48, 75, 110, 473
BspCNI CTCAG 4 cut(s) 187, 256, 451, 529
BspLI GGNNCC 1 cut(s) 473
BspMI ACCTGC 1 cut(s) 167
BspPI GGATC 2 cut(s) 209, 261
BspQI GCTCTTC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 3 cut(s) 92, 333, 352
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 2 cut(s) 214, 253
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 2 cut(s) 130, 175
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 6 cut(s) 174, 264, 336, 438, 467, 516
BstF5I GGATG 4 cut(s) 189, 347, 393, 491
BstKTI GATC 2 cut(s) 217, 256
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 2 cut(s) 214, 253
BstMWI GCNNNNNNNGC 2 cut(s) 60, 153
BstNSI RCATGY 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 4 cut(s) 48, 75, 110, 473
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 4 cut(s) 189, 347, 393, 491
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 4 cut(s) 46, 74, 471, 472
CseI GACGC 1 cut(s) 529
CviAII CATG 3 cut(s) 97, 212, 396
DdeI CTNAG 6 cut(s) 174, 264, 336, 438, 467, 516
DpnI GATC 2 cut(s) 216, 255
DpnII GATC 2 cut(s) 214, 253
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 130, 175
EarI CTCTTC 2 cut(s) 130, 175
Eco24I GRGCYC 1 cut(s) 475
Eco57I CTGAAG 2 cut(s) 44, 441
EcoO109I RGGNCCY 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 3 cut(s) 100, 215, 399
FaiI YATR 6 cut(s) 41, 56, 98, 213, 320, 397
FatI CATG 3 cut(s) 96, 211, 395
FauI CCCGC 1 cut(s) 22
FblI GTMKAC 1 cut(s) 509
Fnu4HI GCNGC 2 cut(s) 111, 179
FokI GGATG 4 cut(s) 176, 334, 400, 498
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 111, 179
GluI GCNGC 2 cut(s) 111, 179
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 4 cut(s) 48, 75, 110, 473
HapII CCGG 2 cut(s) 14, 60
HgaI GACGC 1 cut(s) 529
Hin1II CATG 3 cut(s) 100, 215, 399
HindIII AAGCTT 2 cut(s) 275, 291
HinfI GANTC 2 cut(s) 10, 301
HpaII CCGG 2 cut(s) 14, 60
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 3 cut(s) 441, 480, 519
Hpy188III TCNNGA 3 cut(s) 218, 281, 535
Hpy8I GTNNAC 1 cut(s) 510
HpyAV CCTTC 3 cut(s) 19, 475, 488
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 5 cut(s) 54, 156, 206, 347, 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 153
HpyF3I CTNAG 6 cut(s) 174, 264, 336, 438, 467, 516
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 3 cut(s) 100, 215, 399
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 214, 253
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 186, 463
LweI GCATC 1 cut(s) 356
MaeII ACGT 1 cut(s) 458
MalI GATC 2 cut(s) 216, 255
MbiI CCGCTC 1 cut(s) 181
MboI GATC 2 cut(s) 214, 253
MboII GAAGA 7 cut(s) 117, 120, 123, 126, 162, 352, 413
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 19
MroNI GCCGGC 1 cut(s) 59
MspI CCGG 2 cut(s) 14, 60
MwoI GCNNNNNNNGC 2 cut(s) 60, 153
NaeI GCCGGC 1 cut(s) 61
NdeII GATC 2 cut(s) 214, 253
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 100, 215, 399
NlaIV GGNNCC 1 cut(s) 473
NmeAIII GCCGAG 1 cut(s) 51
NspI RCATGY 1 cut(s) 399
PaqCI CACCTGC 1 cut(s) 167
PciI ACATGT 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 301
PflFI GACNNNGTC 1 cut(s) 505
PkrI GCNGC 2 cut(s) 112, 180
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PscI ACATGT 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 473
PspOMI GGGCCC 1 cut(s) 471
PspPI GGNCC 4 cut(s) 46, 74, 471, 472
PsuI RGATCY 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 505
SapI GCTCTTC 1 cut(s) 175
SatI GCNGC 2 cut(s) 111, 179
Sau3AI GATC 2 cut(s) 214, 253
Sau96I GGNCC 4 cut(s) 46, 74, 471, 472
SchI GAGTC 1 cut(s) 19
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
Sse9I AATT 1 cut(s) 269
SsiI CCGC 4 cut(s) 17, 29, 111, 179
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 461
TasI AATT 1 cut(s) 269
TauI GCSGC 2 cut(s) 113, 181
TfiI GAWTC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 85
Tth111I GACNNNGTC 1 cut(s) 505
XceI RCATGY 1 cut(s) 399
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.