FvH4_6g42750

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010168
Physical Location & Seq
Reverse (-)
33235933 .. 33238006
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42750.t1

Sequence Viewer

Length: 567 bp
ATGGCGATGAGCCCGGCGGTGCTGAAGGCGGGGCTGGTGATAGTGGGCCTGTGCATAGCCGGCTACATTCTGGGCCCGCCTCTCTACTGGCACTCCATGGAAGGCTTGGCCGCCGTCTCTCACTCCTCTTCCTCCTACTCCTGCCCTCCTTGCACCTGCGACTGCTCTTCTCAGCCTCTCCTCTCCATCCCCATCGGACTCAGCAACATTTCGTTTGCAGACTGTGCAAAGCGTGATCCGGAGGTGAACGAGGATACCGAGAAGAACTTTGTTGATCTTTTGACCGAGGAGTTGAAGCTTCGGGAGGCTCAAGCTTTGGAGAATCAGCAAAAGGCTGATATTACTCTACTGGAGGCTAAGAAGATTGCATCCCAGTATCAAAAGGAAGCTGACAAGTGCAGTTCAGGGATGGAAACATGTGAAGAAGCGAGGGAGAAAGCTGAAGCTACATTAGAGGCTCAAAAGAAAATGACAGCAATGTGGGAGCTTAGGGCCCGTCAGAAAGGATGGAAAGAAGGAATGACCAAGTCTACAGCTCAGATGCAAGGAAATGTCGAGACTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

189

Amino Acids

20.55

Weight (kDa)

5.08

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 6 - 173 3.6e-83 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05070 AT2G32580 AT2G32580
fragaria_vesca FvH4_6g42750
malus_domestica MD09G1063300.v1.1 MD09G1071500.v1.1 MD17G1100600.v1.1
prunus_persica Prupe.3G213900_v2.0.a1
pyrus_communis pycom09g03460 pycom12g05330 pycom17g09540
rosa_chinensis RchiOBHm_Chr2g0158641
rosa_laevigata RLG00000021102
rosa_multiflora Rmu_sc0039916.1_g000001
rosa_roxburghii Rroxscaffold_2G00091150
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536800 Rh2BG550000 Rh2CG520500 Rh2DG559600
rosa_wichuraiana Rw2G044440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 164
AccI GTMKAC 1 cut(s) 530
AccIII TCCGGA 1 cut(s) 238
AciI CCGC 4 cut(s) 17, 29, 77, 111
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 44, 462
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 7 cut(s) 298, 314, 389, 440, 446, 487, 536
AluI AGCT 7 cut(s) 298, 314, 389, 440, 446, 487, 536
Alw26I GTCTC 2 cut(s) 121, 551
AlwI GGATC 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 4 cut(s) 46, 73, 108, 492
ApaI GGGCCC 2 cut(s) 77, 496
AspS9I GGNCC 5 cut(s) 46, 73, 74, 492, 493
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 49, 256
BaeGI GKGCMC 2 cut(s) 77, 496
BanII GRGCYC 3 cut(s) 14, 77, 496
BccI CCATC 4 cut(s) 194, 200, 403, 501
BceAI ACGGC 1 cut(s) 98
BciVI GTATCC 1 cut(s) 247
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 2 cut(s) 121, 551
BfmI CTRYAG 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 164
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 14
BmgT120I GGNCC 5 cut(s) 46, 73, 74, 492, 493
BmiI GGNNCC 2 cut(s) 75, 494
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 2 cut(s) 377, 531
BmuI ACTGGG 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 371
Bpu10I CCTNAGC 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 96, 285
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 92, 354, 373
Bse3DI GCAATG 1 cut(s) 483
BseAI TCCGGA 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 96, 285
BseGI GGATG 4 cut(s) 186, 368, 414, 512
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 3 cut(s) 185, 214, 551
BseNI ACTGG 3 cut(s) 92, 354, 373
BseRI GAGGAG 3 cut(s) 115, 170, 302
BseSI GKGCMC 2 cut(s) 77, 496
BsgI GTGCAG 1 cut(s) 418
BshFI GGCC 4 cut(s) 48, 75, 110, 494
BsiSI CCGG 3 cut(s) 14, 60, 239
BsmAI GTCTC 2 cut(s) 121, 551
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 4 cut(s) 48, 75, 110, 494
Bsp120I GGGCCC 2 cut(s) 73, 492
Bsp1286I GDGCHC 3 cut(s) 14, 77, 496
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 235, 274
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 4 cut(s) 17, 29, 77, 111
BspANI GGCC 4 cut(s) 48, 75, 110, 494
BspCNI CTCAG 3 cut(s) 184, 213, 550
BspEI TCCGGA 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 75, 494
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 3 cut(s) 92, 354, 373
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 96, 285
BssMI GATC 2 cut(s) 235, 274
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 224, 562
Bst6I CTCTTC 2 cut(s) 133, 172
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 61, 77
BstDEI CTNAG 5 cut(s) 171, 200, 357, 488, 537
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 4 cut(s) 186, 368, 414, 512
BstKTI GATC 2 cut(s) 238, 277
BstMAI GTCTC 2 cut(s) 121, 551
BstMBI GATC 2 cut(s) 235, 274
BstMWI GCNNNNNNNGC 3 cut(s) 60, 150, 224
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 531
BstSLI GKGCMC 2 cut(s) 77, 496
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 4 cut(s) 48, 75, 110, 494
BtgI CCRYGG 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 4 cut(s) 186, 368, 414, 512
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 61, 77
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 5 cut(s) 46, 73, 74, 492, 493
CviAII CATG 2 cut(s) 97, 417
DdeI CTNAG 5 cut(s) 171, 200, 357, 488, 537
DpnI GATC 2 cut(s) 237, 276
DpnII GATC 2 cut(s) 235, 274
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 133, 172
EarI CTCTTC 2 cut(s) 133, 172
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 3 cut(s) 14, 77, 496
Eco57I CTGAAG 2 cut(s) 44, 462
EcoO109I RGGNCCY 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 3 cut(s) 14, 77, 496
ErhI CCWWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 2 cut(s) 100, 420
FaiI YATR 3 cut(s) 56, 98, 418
FatI CATG 2 cut(s) 96, 416
FauI CCCGC 2 cut(s) 22, 84
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 4 cut(s) 173, 355, 421, 519
FriOI GRGCYC 3 cut(s) 14, 77, 496
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 4 cut(s) 48, 75, 110, 494
HapII CCGG 3 cut(s) 14, 60, 239
Hin1II CATG 2 cut(s) 100, 420
HindIII AAGCTT 2 cut(s) 296, 312
HinfI GANTC 2 cut(s) 198, 322
HpaII CCGG 3 cut(s) 14, 60, 239
HphI GGTGA 2 cut(s) 49, 256
Hpy166II GTNNAC 2 cut(s) 247, 531
Hpy188I TCNGA 3 cut(s) 197, 501, 540
Hpy188III TCNNGA 3 cut(s) 239, 302, 556
Hpy8I GTNNAC 2 cut(s) 247, 531
HpyAV CCTTC 3 cut(s) 19, 95, 509
HpyCH4III ACNGT 2 cut(s) 224, 562
HpyCH4V TGCA 7 cut(s) 54, 153, 218, 227, 368, 399, 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 150, 224
HpyF3I CTNAG 5 cut(s) 171, 200, 357, 488, 537
Hsp92II CATG 2 cut(s) 100, 420
Kpn2I TCCGGA 1 cut(s) 238
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 235, 274
LguI GCTCTTC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 484
LweI GCATC 2 cut(s) 377, 531
MalI GATC 2 cut(s) 237, 276
MboI GATC 2 cut(s) 235, 274
MboII GAAGA 5 cut(s) 120, 159, 274, 373, 434
MhlI GDGCHC 3 cut(s) 14, 77, 496
MlyI GAGTC 1 cut(s) 192
MroI TCCGGA 1 cut(s) 238
MroNI GCCGGC 1 cut(s) 59
MspI CCGG 3 cut(s) 14, 60, 239
MspR9I CCNGG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 60, 150, 224
NaeI GCCGGC 1 cut(s) 61
NciI CCSGG 1 cut(s) 14
NcoI CCATGG 1 cut(s) 96
NdeII GATC 2 cut(s) 235, 274
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 2 cut(s) 100, 420
NlaIV GGNNCC 2 cut(s) 75, 494
NspI RCATGY 1 cut(s) 420
PaqCI CACCTGC 1 cut(s) 164
PciI ACATGT 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 526
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PscI ACATGT 1 cut(s) 416
PspN4I GGNNCC 2 cut(s) 75, 494
PspOMI GGGCCC 2 cut(s) 73, 492
PspPI GGNCC 5 cut(s) 46, 73, 74, 492, 493
PsyI GACNNNGTC 1 cut(s) 526
SapI GCTCTTC 1 cut(s) 172
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 235, 274
Sau96I GGNCC 5 cut(s) 46, 73, 74, 492, 493
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 3 cut(s) 14, 77, 496
SetI ASST 9 cut(s) 158, 246, 300, 316, 391, 442, 448, 489, 538
SfaNI GCATC 2 cut(s) 377, 531
SfcI CTRYAG 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
SsiI CCGC 4 cut(s) 17, 29, 77, 111
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 224, 562
TaqI TCGA 1 cut(s) 555
TaqII GACCGA 1 cut(s) 299
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 322
Tth111I GACNNNGTC 1 cut(s) 526
XceI RCATGY 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.