AT1G05840

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
1762734 .. 1766283
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05840.1

Sequence Viewer

Length: 1458 bp
ATGACTTTATCAATCGTATCTTTCCCCATCTGCGGAAGATTCACGCTGATTTGGTTTCTCACTGCTCTTGTTTCCGTCTCTTGTAATCCCGGAGTGTTCAATGTAAAGTACCGTTATCCAAGGCTTCAAGGGTCCTTGACCGCCTTAAAGGAGCACGATGACCGGCGTCAGCTCACAATTCTCGCTGGAATCGATCTACCCCTTGGTGGAACTGGTCGCCCTGATATCCCCGGGCTTTATTATGCAAAAATTGGAATTGGAACACCTGCTAAGAGCTATTATGTTCAAGTCGACACAGGGAGTGATATTATGTGGGTTAACTGCATCCAGTGCAAACAATGTCCAAGACGAAGCACTCTCGGTATTGAGCTTACACTCTACAACATTGACGAATCAGACAGTGGAAAGTTGGTCTCTTGTGATGATGATTTTTGCTACCAGATTAGTGGTGGTCCTCTCTCTGGCTGCAAAGCTAATATGTCTTGTCCTTATCTTGAGATATATGGAGATGGTAGCTCTACTGCTGGTTATTTTGTCAAAGATGTTGTGCAGTATGACAGTGTAGCTGGTGATCTCAAGACTCAAACAGCTAATGGCAGTGTCATTTTTGGGTGTGGTGCTAGGCAGTCAGGAGATCTAGACTCTTCTAATGAAGAAGCACTTGACGGAATACTTGGATTTGGGAAAGCTAATTCTTCCATGATTTCCCAGCTGGCCTCATCAGGGAGAGTGAAAAAGATATTTGCTCATTGCTTAGATGGAAGAAATGGAGGTGGTATATTTGCTATTGGACGTGTTGTGCAACCAAAAGTAAACATGACACCATTGGTACCCAATCAACCACATTACAATGTCAATATGACAGCAGTTCAAGTTGGTCAGGAGTTTCTAACTATCCCAGCCGATTTATTTCAACCTGGAGATAGAAAAGGAGCGATAATTGACAGTGGTACAACCTTGGCCTATCTTCCAGAGATAATCTATGAACCATTGGTGAAGAAGATAACCTCGCAGGAGCCTGCTCTAAAAGTTCACATAGTGGATAAAGATTATAAATGCTTTCAGTACTCTGGCAGAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTTTTCCTCAGGGTTTATCCTCATGACTATCTGTTCCCTCATGAAGGAATGTGGTGCATTGGTTGGCAAAATAGCGCAATGCAATCCAGAGATAGGAGAAACATGACACTTTTGGGAGATTTGGTGCTTTCAAACAAGCTTGTTCTCTACGATCTCGAAAATCAGCTCATTGGGTGGACTGAATACAACTGCTCATCAAGCATAAAAGTAAAAGACGAAGGCACAGGAACAGTTCATCTAGTAGGCTCACATTTTATCTCTTCTGCATTACCTTTGGATACCTCTATGTGTCTTCTATTTTCTTTACTTCTCCTCATGACTCTTTTCCTCCTTTAG

Protein Analysis

485

Amino Acids

53.3

Weight (kDa)

5.75

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 80 - 264 1.2e-37 Xylanase inhibitor N-terminal
Asp PF00026 80 - 434 1.8e-23 Eukaryotic aspartyl protease
TAXi_C PF14541 282 - 434 1.1e-19 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1053
AarI CACCTGC 1 cut(s) 274
Acc36I ACCTGC 1 cut(s) 274
Acc65I GGTACC 1 cut(s) 829
AccB1I GGYRCC 1 cut(s) 829
AccI GTMKAC 1 cut(s) 291
AciI CCGC 2 cut(s) 33, 141
AcyI GRCGYC 1 cut(s) 166
AdeI CACNNNGTG 1 cut(s) 1039
AfaI GTAC 4 cut(s) 110, 831, 952, 1067
AfiI CCNNNNNNNGG 6 cut(s) 32, 206, 461, 723, 1166, 1215
AflIII ACRYGT 1 cut(s) 793
AgsI TTSAA 6 cut(s) 100, 128, 287, 872, 914, 1254
AjiI CACGTC 1 cut(s) 794
AjnI CCWGG 1 cut(s) 916
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 82, 418
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 2 cut(s) 714, 960
ApeKI GCWGC 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 829
AspLEI GCGC 1 cut(s) 1199
AspS9I GGNCC 2 cut(s) 132, 452
AsuC2I CCSGG 3 cut(s) 90, 231, 232
AsuHPI GGTGA 2 cut(s) 581, 1006
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 2 cut(s) 132, 452
AxyI CCTNAGG 1 cut(s) 1130
BanI GGYRCC 1 cut(s) 829
BbsI GAAGAC 1 cut(s) 1406
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 452
BccI CCATC 3 cut(s) 35, 503, 752
BciT130I CCWGG 1 cut(s) 918
BciVI GTATCC 1 cut(s) 1393
BcnI CCSGG 3 cut(s) 90, 231, 232
BcoDI GTCTC 2 cut(s) 82, 418
BfaI CTAG 3 cut(s) 621, 638, 1361
BfuAI ACCTGC 1 cut(s) 274
BfuI GTATCC 1 cut(s) 1393
BglII AGATCT 1 cut(s) 634
BisI GCNGC 1 cut(s) 466
BlsI GCNGC 1 cut(s) 467
BmcAI AGTACT 1 cut(s) 1067
Bme1390I CCNGG 4 cut(s) 90, 231, 232, 918
Bme18I GGWCC 2 cut(s) 132, 452
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 794
BmgT120I GGNCC 2 cut(s) 132, 452
BmiI GGNNCC 3 cut(s) 133, 831, 1017
BmrFI CCNGG 4 cut(s) 90, 231, 232, 918
BmsI GCATC 1 cut(s) 333
BoxI GACNNNNGTC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 1406
BpmI CTGGAG 1 cut(s) 939
BpuEI CTTGAG 2 cut(s) 515, 560
BpuMI CCSGG 3 cut(s) 90, 231, 232
Bsa29I ATCGAT 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 418
BsaJI CCNNGG 5 cut(s) 119, 202, 229, 230, 957
BsaXI ACNNNNNCTCC 2 cut(s) 1230, 1260
Bsc4I CCNNNNNNNGG 6 cut(s) 32, 206, 461, 723, 1166, 1215
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 217, 328
Bse21I CCTNAGG 1 cut(s) 1130
Bse3DI GCAATG 2 cut(s) 748, 1206
BseBI CCWGG 1 cut(s) 918
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 5 cut(s) 119, 202, 229, 230, 957
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 6 cut(s) 32, 206, 461, 723, 1166, 1215
BseMI GCAATG 2 cut(s) 748, 1206
BseMII CTCAG 1 cut(s) 1144
BseNI ACTGG 2 cut(s) 217, 328
BseRI GAGGAG 1 cut(s) 1424
BseXI GCAGC 1 cut(s) 452
BseYI CCCAGC 2 cut(s) 708, 898
BsgI GTGCAG 1 cut(s) 569
BshFI GGCC 2 cut(s) 716, 962
BshNI GGYRCC 1 cut(s) 829
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 3 cut(s) 90, 163, 231
BslI CCNNNNNNNGG 6 cut(s) 32, 206, 461, 723, 1166, 1215
BsmAI GTCTC 2 cut(s) 82, 418
BsmBI CGTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 716, 962
Bso31I GGTCTC 1 cut(s) 418
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 4 cut(s) 193, 571, 634, 1273
BspACI CCGC 2 cut(s) 33, 141
BspANI GGCC 2 cut(s) 716, 962
BspCNI CTCAG 1 cut(s) 1143
BspDI ATCGAT 1 cut(s) 192
BspHI TCATGA 3 cut(s) 1144, 1162, 1437
BspLI GGNNCC 3 cut(s) 133, 831, 1017
BspMI ACCTGC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 829
BspTNI GGTCTC 1 cut(s) 418
BsrDI GCAATG 2 cut(s) 748, 1206
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 2 cut(s) 217, 328
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 5 cut(s) 119, 202, 229, 230, 957
BssMI GATC 4 cut(s) 193, 571, 634, 1273
BssNI GRCGYC 1 cut(s) 166
BssT1I CCWWGG 3 cut(s) 119, 202, 957
Bst2UI CCWGG 1 cut(s) 918
Bst4CI ACNGT 5 cut(s) 113, 401, 560, 947, 1354
Bst6I CTCTTC 2 cut(s) 649, 1387
BstACI GRCGYC 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 714, 1020
BstDEI CTNAG 3 cut(s) 270, 754, 1130
BstENI CCTNNNNNAGG 1 cut(s) 1164
BstF5I GGATG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 1199
BstKTI GATC 4 cut(s) 196, 574, 637, 1276
BstMAI GTCTC 2 cut(s) 82, 418
BstMBI GATC 4 cut(s) 193, 571, 634, 1273
BstMWI GCNNNNNNNGC 2 cut(s) 330, 1320
BstNI CCWGG 1 cut(s) 918
BstPAI GACNNNNGTC 1 cut(s) 165
BstSCI CCNGG 4 cut(s) 88, 229, 230, 916
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 1406
BstX2I RGATCY 1 cut(s) 634
BstXI CCANNNNNNTGG 1 cut(s) 446
BstYI RGATCY 1 cut(s) 634
Bsu15I ATCGAT 1 cut(s) 192
Bsu36I CCTNAGG 1 cut(s) 1130
BsuI GTATCC 1 cut(s) 1393
BsuRI GGCC 2 cut(s) 716, 962
BsuTUI ATCGAT 1 cut(s) 192
BtrI CACGTC 1 cut(s) 794
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 2 cut(s) 60, 604
BtsIMutI CAGTG 6 cut(s) 60, 335, 406, 565, 604, 952
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 714, 1020
CciI TCATGA 3 cut(s) 1144, 1162, 1437
CfoI GCGC 1 cut(s) 1199
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 132, 452
Cfr9I CCCGGG 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 1 cut(s) 155
Csp6I GTAC 4 cut(s) 109, 830, 951, 1066
CviAII CATG 6 cut(s) 700, 817, 1145, 1163, 1225, 1438
CviQI GTAC 4 cut(s) 109, 830, 951, 1066
DdeI CTNAG 3 cut(s) 270, 754, 1130
DpnI GATC 4 cut(s) 195, 573, 636, 1275
DpnII GATC 4 cut(s) 193, 571, 634, 1273
DraIII CACNNNGTG 1 cut(s) 1039
Eam1104I CTCTTC 2 cut(s) 649, 1387
EarI CTCTTC 2 cut(s) 649, 1387
Eco130I CCWWGG 3 cut(s) 119, 202, 957
Eco31I GGTCTC 1 cut(s) 418
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 132, 452
Eco81I CCTNAGG 1 cut(s) 1130
Eco88I CYCGRG 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 1164
EcoO109I RGGNCCY 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 916
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 3 cut(s) 119, 202, 957
ErhI CCWWGG 3 cut(s) 119, 202, 957
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 6 cut(s) 703, 820, 1148, 1166, 1228, 1441
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FatI CATG 6 cut(s) 699, 816, 1144, 1162, 1224, 1437
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 466
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 466
FspBI CTAG 3 cut(s) 621, 638, 1361
GlaI GCGC 1 cut(s) 1198
GluI GCNGC 1 cut(s) 466
GsaI CCCAGC 2 cut(s) 712, 902
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 2 cut(s) 716, 962
HapII CCGG 3 cut(s) 90, 163, 231
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 1199
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 6 cut(s) 703, 820, 1148, 1166, 1228, 1441
Hin6I GCGC 1 cut(s) 1197
HinP1I GCGC 1 cut(s) 1197
HincII GTYRAC 2 cut(s) 292, 319
HindII GTYRAC 2 cut(s) 292, 319
HindIII AAGCTT 1 cut(s) 1259
HinfI GANTC 6 cut(s) 39, 189, 392, 580, 641, 1441
HpaI GTTAAC 1 cut(s) 319
HpaII CCGG 3 cut(s) 90, 163, 231
HphI GGTGA 2 cut(s) 581, 1006
Hpy166II GTNNAC 5 cut(s) 292, 319, 814, 1033, 1299
Hpy188I TCNGA 2 cut(s) 397, 1095
Hpy8I GTNNAC 5 cut(s) 292, 319, 814, 1033, 1299
HpyAV CCTTC 2 cut(s) 1160, 1334
HpyCH4III ACNGT 5 cut(s) 113, 401, 560, 947, 1354
HpyCH4IV ACGT 1 cut(s) 793
HpyCH4V TGCA 9 cut(s) 245, 324, 333, 468, 550, 802, 1179, 1204, 1388
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 1320
HpyF3I CTNAG 3 cut(s) 270, 754, 1130
HpySE526I ACGT 1 cut(s) 793
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 6 cut(s) 703, 820, 1148, 1166, 1228, 1441
HspAI GCGC 1 cut(s) 1197
KpnI GGTACC 1 cut(s) 833
KspAI GTTAAC 1 cut(s) 319
Kzo9I GATC 4 cut(s) 193, 571, 634, 1273
LmnI GCTCC 3 cut(s) 151, 932, 1015
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 1 cut(s) 333
MaeI CTAG 3 cut(s) 621, 638, 1361
MaeII ACGT 1 cut(s) 793
MaeIII GTNAC 1 cut(s) 1099
MalI GATC 4 cut(s) 195, 573, 636, 1275
MboI GATC 4 cut(s) 193, 571, 634, 1273
MflI RGATCY 1 cut(s) 634
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 5 cut(s) 177, 249, 255, 691, 939
MlyI GAGTC 3 cut(s) 574, 635, 1435
MseI TTAA 2 cut(s) 146, 318
MslI CAYNNNNRTG 1 cut(s) 849
MspA1I CMGCKG 1 cut(s) 712
MspI CCGG 3 cut(s) 90, 163, 231
MspR9I CCNGG 4 cut(s) 90, 231, 232, 918
MvaI CCWGG 1 cut(s) 918
MwoI GCNNNNNNNGC 2 cut(s) 330, 1320
NciI CCSGG 3 cut(s) 90, 231, 232
NdeII GATC 4 cut(s) 193, 571, 634, 1273
NlaIII CATG 6 cut(s) 703, 820, 1148, 1166, 1228, 1441
NlaIV GGNNCC 3 cut(s) 133, 831, 1017
NmuCI GTSAC 1 cut(s) 1099
PagI TCATGA 3 cut(s) 1144, 1162, 1437
PaqCI CACCTGC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 3 cut(s) 39, 189, 392
PfoI TCCNGGA 1 cut(s) 88
PkrI GCNGC 1 cut(s) 467
PleI GAGTC 3 cut(s) 574, 635, 1435
PpsI GAGTC 3 cut(s) 574, 635, 1435
PpuMI RGGWCCY 1 cut(s) 132
PshAI GACNNNNGTC 1 cut(s) 165
PsiI TTATAA 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 916
PspFI CCCAGC 2 cut(s) 708, 898
PspGI CCWGG 1 cut(s) 916
PspN4I GGNNCC 3 cut(s) 133, 831, 1017
PspPI GGNCC 2 cut(s) 132, 452
PspPPI RGGWCCY 1 cut(s) 132
PsuI RGATCY 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 712
RsaI GTAC 4 cut(s) 110, 831, 952, 1067
RsaNI GTAC 4 cut(s) 109, 830, 951, 1066
RseI CAYNNNNRTG 1 cut(s) 849
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 146, 318
SatI GCNGC 1 cut(s) 466
Sau3AI GATC 4 cut(s) 193, 571, 634, 1273
Sau96I GGNCC 2 cut(s) 132, 452
ScaI AGTACT 1 cut(s) 1067
SchI GAGTC 3 cut(s) 574, 635, 1435
ScrFI CCNGG 4 cut(s) 90, 231, 232, 918
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 1 cut(s) 333
SinI GGWCC 2 cut(s) 132, 452
SmaI CCCGGG 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 849
SmlI CTYRAG 2 cut(s) 494, 575
SmoI CTYRAG 2 cut(s) 494, 575
Sse9I AATT 5 cut(s) 177, 249, 255, 691, 939
SsiI CCGC 2 cut(s) 33, 141
SspMI CTAG 3 cut(s) 621, 638, 1361
StyD4I CCNGG 4 cut(s) 88, 229, 230, 916
StyI CCWWGG 3 cut(s) 119, 202, 957
TaaI ACNGT 5 cut(s) 113, 401, 560, 947, 1354
TaiI ACGT 1 cut(s) 796
TaqI TCGA 4 cut(s) 192, 291, 1113, 1278
TasI AATT 5 cut(s) 177, 249, 255, 691, 939
TatI WGTACW 1 cut(s) 1065
TfiI GAWTC 3 cut(s) 39, 189, 392
Tru1I TTAA 2 cut(s) 146, 318
Tru9I TTAA 2 cut(s) 146, 318
TscAI CASTG 6 cut(s) 67, 335, 406, 565, 604, 952
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 1099
TspDTI ATGAA 4 cut(s) 666, 999, 1179, 1346
TspGWI ACGGA 2 cut(s) 64, 681
TspMI CCCGGG 1 cut(s) 230
TspRI CASTG 6 cut(s) 67, 335, 406, 565, 604, 952
VpaK11BI GGWCC 2 cut(s) 132, 452
XagI CCTNNNNNAGG 1 cut(s) 1164
XbaI TCTAGA 1 cut(s) 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 446
XmaI CCCGGG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 3 cut(s) 621, 638, 1361
ZrmI AGTACT 1 cut(s) 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.