Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026249.1

Orthogroup ID

OG0005214

Physical Location & Seq

Genomic Coordinates Reverse (-)

210 .. 518

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgtcatctgccgctatgaaaacaggcacactcactctcacaacctcatgccggagctttcttcttctcttactccccctgatttccaccaacatcatcgccggtgtcgctctcaacaacgccttcttgagcgtcaagtacaaattcgccagccgcgaccccactctcagcgccctaaaagctcacgacaccaaatgcactattcgatttctcgctggcgtggatctccttcttggtggctccggcctccctgacgccgtcgggggcatcaaaattcaacttcttgtcatgctctacaagcctgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

102

Amino Acids

10.75

Weight (kDa)

9.76

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05840
fragaria_vesca	FvH4_4g12250 FvH4_4g12250 FvH4_4g12250
malus_domestica	MD04G1028200.v1.1
prunus_persica	Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1
pyrus_communis	pycom04g02480 pycom13g29440 pycom13g29450
rosa_chinensis	RchiOBHm_Chr4g0410011 RchiOBHm_Chr4g0410051
rosa_laevigata	RLG00000008506
rosa_multiflora	Rmu_sc0000023.1_g000006 Rmu_sc0019088.1_g000003 Rmu_sc0026249.1_g000001 Rmu_ssc0000186.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354520 Rroxscaffold_5G00354580
rosa_rugosa	Rorug04G0100700 Rorug04G0100800
rosa_samantha	Rh4AG159000 Rh4BG158300 Rh4BG172300 Rh4CG170300 Rh4DG154100 Rh6BG295000
rosa_wichuraiana	Rw4G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	12, 154
AclWI	GGATC	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	143, 273
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	2 cut(s)	57, 182
AluI	AGCT	2 cut(s)	57, 182
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	143, 273
AspLEI	GCGC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	2 cut(s)	12, 154
BlsI	GCNGC	2 cut(s)	13, 155
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	52, 102, 243
BslI	CCNNNNNNNGG	1 cut(s)	51
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	12, 154
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	151, 217
BstDEI	CTNAG	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 179, 298
BstUI	CGCG	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	151, 217
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	101
CseI	GACGC	2 cut(s)	121, 263
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	2 cut(s)	48, 289
CviJI	RGCY	6 cut(s)	57, 153, 182, 240, 246, 301
CviKI_1	RGCY	6 cut(s)	57, 153, 182, 240, 246, 301
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
FaeI	CATG	2 cut(s)	51, 292
FaiI	YATR	3 cut(s)	17, 49, 290
FatI	CATG	2 cut(s)	47, 288
Fnu4HI	GCNGC	2 cut(s)	12, 154
Fsp4HI	GCNGC	2 cut(s)	12, 154
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	2 cut(s)	12, 154
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	3 cut(s)	52, 102, 243
HgaI	GACGC	2 cut(s)	121, 263
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	51, 292
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HpaII	CCGG	3 cut(s)	52, 102, 243
Hpy188III	TCNNGA	2 cut(s)	127, 185
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	133, 239
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 179, 298
HpyF3I	CTNAG	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	51, 292
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	54, 245
LpnPI	CCDG	8 cut(s)	9, 65, 92, 115, 163, 201, 256, 264
LweI	GCATC	1 cut(s)	276
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	2 cut(s)	53, 56
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	2 cut(s)	143, 273
MnlI	CCTC	2 cut(s)	55, 257
MspI	CCGG	3 cut(s)	52, 102, 243
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	107, 179, 298
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	51, 292
NlaIV	GGNNCC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	13, 155
PspN4I	GGNNCC	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SatI	GCNGC	2 cut(s)	12, 154
Sau3AI	GATC	1 cut(s)	223
SetI	ASST	3 cut(s)	47, 59, 184
SfaNI	GCATC	1 cut(s)	276
SgrAI	CRCCGGYG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	2 cut(s)	143, 273
SsiI	CCGC	2 cut(s)	12, 154
TaqI	TCGA	1 cut(s)	205
TasI	AATT	2 cut(s)	143, 273
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	2 cut(s)	14, 156
TspDTI	ATGAA	1 cut(s)	32
Tth111I	GACNNNGTC	1 cut(s)	257
XapI	RAATTY	2 cut(s)	143, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.