Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005214

Physical Location & Seq

Genomic Coordinates Forward (+)

26271856 .. 26274385

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g29440.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCCAACAAAGAAAGGAATGAAGCTTCACACCAATTTGGCTTTCAACGAAACCGAAAGACTACAAATTCTTCTCTTTCCTTCTTTCTTTCTTTCTCTCTTCTGGCCTTTCCGGGTCTCCTCCTCCATGCAACAACCCATGGCTTCAACGACGGTGTCGATCATGAAGGTGGTGGCGGCCACTCCGATAACCTCGTTCTCCAGCTTCGCACTGCTATTCCTGCTCTTGATTTCAACCAAAATCACAAACACCTTCGCTCTCAACAGTGCCTTTCTGAGCGTCAAGTACAAATACGCCGGCCGCGAACCTTCCTTGAGCGCCCTTAAAGCTCACGATATCCAGCGGACTCTTCGATTTCTTGCCGGCGTTGACCTCCCTTTAGGCGGCTCTGGCCGGCCTGATGTCGTCGGCTTATACTATGCTAAAATTGGCATTGGAACACCTACCAAGGACTACTATGTACAAGTTGATACAGGAAGTGACATTATGTGGGTCAACTGTATACAATGCAGAGATTGTCCACAGAGAAGCACACTTGGTATTGATCTTACTCTATATGATGTTAAGCAGTCCTCCACTGGTAAATTAGTTCCTTGTAATCAAGATTTTTGCTTGGAGGTAAATGACGGTCTGCTGTCTGGATGTACGGCTAATATGACATGTCCATACCTGCAAATATACGGAGATGGAACCTCAACTGCCGGTTACTTTGTCAAGGATATTGTGTTTTATGATGGAGTGTCTGGTGACCTCAAGACTAGTCTGCCAATGGGAGCGTCATTTTTGGGTGTGGTGCTACGCAATCTGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

272

Amino Acids

29.68

Weight (kDa)

8.61

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05840
fragaria_vesca	FvH4_4g12250 FvH4_4g12250 FvH4_4g12250
malus_domestica	MD04G1028200.v1.1
prunus_persica	Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1
pyrus_communis	pycom04g02480 pycom13g29440 pycom13g29450
rosa_chinensis	RchiOBHm_Chr4g0410011 RchiOBHm_Chr4g0410051
rosa_laevigata	RLG00000008506
rosa_multiflora	Rmu_sc0000023.1_g000006 Rmu_sc0019088.1_g000003 Rmu_sc0026249.1_g000001 Rmu_ssc0000186.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354520 Rroxscaffold_5G00354580
rosa_rugosa	Rorug04G0100700 Rorug04G0100800
rosa_samantha	Rh4AG159000 Rh4BG158300 Rh4BG172300 Rh4CG170300 Rh4DG154100 Rh6BG295000
rosa_wichuraiana	Rw4G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	678
AccI	GTMKAC	1 cut(s)	502
AccII	CGCG	1 cut(s)	303
AciI	CCGC	4 cut(s)	176, 301, 343, 384
AcoI	YGGCCR	3 cut(s)	177, 298, 391
AcsI	RAATTY	1 cut(s)	66
AfaI	GTAC	3 cut(s)	287, 462, 646
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	659
AgsI	TTSAA	3 cut(s)	46, 147, 234
AhlI	ACTAGT	1 cut(s)	758
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	3 cut(s)	25, 204, 329
AluI	AGCT	3 cut(s)	25, 204, 329
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	5 cut(s)	104, 177, 298, 391, 395
ApoI	RAATTY	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	758
BccI	CCATC	2 cut(s)	680, 728
BceAI	ACGGC	1 cut(s)	663
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	121
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	2 cut(s)	759, 814
BfoI	RGCGCY	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	678
BisI	GCNGC	3 cut(s)	177, 301, 385
BlsI	GCNGC	3 cut(s)	178, 302, 386
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	691
BmrFI	CCNGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	184
BpuEI	CTTGAG	2 cut(s)	334, 737
BpuMI	CCSGG	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	138, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	4 cut(s)	296, 362, 393, 701
Bse1I	ACTGG	1 cut(s)	583
BseDI	CCNNGG	2 cut(s)	138, 447
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	583
BseRI	GAGGAG	2 cut(s)	109, 112
BseX3I	CGGCCG	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	303
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	106, 179, 300, 393, 397
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	5 cut(s)	112, 297, 363, 394, 702
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	5 cut(s)	106, 179, 300, 393, 397
Bso31I	GGTCTC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	159, 544, 810
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	4 cut(s)	176, 301, 343, 384
BspANI	GGCC	5 cut(s)	106, 179, 300, 393, 397
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	691
BspMI	ACCTGC	1 cut(s)	678
BspTNI	GGTCTC	1 cut(s)	121
BsrFI	RCCGGY	4 cut(s)	296, 362, 393, 701
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	583
BssAI	RCCGGY	4 cut(s)	296, 362, 393, 701
BssECI	CCNNGG	2 cut(s)	138, 447
BssMI	GATC	3 cut(s)	159, 544, 810
BssNAI	GTATAC	1 cut(s)	503
BssT1I	CCWWGG	2 cut(s)	138, 447
Bst1107I	GTATAC	1 cut(s)	503
Bst4CI	ACNGT	4 cut(s)	154, 266, 500, 629
Bst6I	CTCTTC	2 cut(s)	104, 354
BstAUI	TGTACA	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	298, 364, 395
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	138
BstEII	GGTNACC	1 cut(s)	746
BstF5I	GGATG	1 cut(s)	647
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	3 cut(s)	162, 547, 813
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	3 cut(s)	159, 544, 810
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 326, 390
BstNSI	RCATGY	1 cut(s)	663
BstPI	GGTNACC	1 cut(s)	746
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	303
BstZ17I	GTATAC	1 cut(s)	503
BstZI	CGGCCG	1 cut(s)	298
BsuRI	GGCC	5 cut(s)	106, 179, 300, 393, 397
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	647
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	209, 271, 576
BveI	ACCTGC	1 cut(s)	678
Cac8I	GCNNGC	3 cut(s)	298, 364, 395
CciI	TCATGA	1 cut(s)	162
CfoI	GCGC	1 cut(s)	320
Cfr10I	RCCGGY	4 cut(s)	296, 362, 393, 701
CseI	GACGC	2 cut(s)	268, 765
Csp6I	GTAC	3 cut(s)	286, 461, 645
CviAII	CATG	4 cut(s)	127, 139, 163, 660
CviQI	GTAC	3 cut(s)	286, 461, 645
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	3 cut(s)	161, 546, 812
DpnII	GATC	3 cut(s)	159, 544, 810
EaeI	YGGCCR	3 cut(s)	177, 298, 391
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	104, 354
EarI	CTCTTC	2 cut(s)	104, 354
EclXI	CGGCCG	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	138, 447
Eco31I	GGTCTC	1 cut(s)	121
Eco32I	GATATC	1 cut(s)	337
Eco52I	CGGCCG	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	746
EcoO65I	GGTNACC	1 cut(s)	746
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	138, 447
ErhI	CCWWGG	2 cut(s)	138, 447
FaeI	CATG	4 cut(s)	130, 142, 166, 663
FatI	CATG	4 cut(s)	126, 138, 162, 659
FblI	GTMKAC	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	177, 301, 385
FokI	GGATG	1 cut(s)	654
FseI	GGCCGGCC	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	177, 301, 385
FspBI	CTAG	2 cut(s)	759, 814
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	3 cut(s)	177, 301, 385
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	5 cut(s)	106, 179, 300, 393, 397
HapII	CCGG	5 cut(s)	112, 297, 363, 394, 702
HgaI	GACGC	2 cut(s)	268, 765
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	130, 142, 166, 663
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HincII	GTYRAC	2 cut(s)	370, 496
HindII	GTYRAC	2 cut(s)	370, 496
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	5 cut(s)	112, 297, 363, 394, 702
HphI	GGTGA	1 cut(s)	758
Hpy166II	GTNNAC	4 cut(s)	370, 496, 503, 521
Hpy188I	TCNGA	2 cut(s)	186, 276
Hpy188III	TCNNGA	6 cut(s)	163, 226, 332, 602, 639, 754
Hpy8I	GTNNAC	4 cut(s)	370, 496, 503, 521
Hpy99I	CGWCG	2 cut(s)	154, 410
HpyAV	CCTTC	4 cut(s)	90, 160, 262, 318
HpyCH4III	ACNGT	4 cut(s)	154, 266, 500, 629
HpyCH4V	TGCA	3 cut(s)	130, 510, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 326, 390
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	130, 142, 166, 663
HspAI	GCGC	1 cut(s)	318
KroI	GCCGGC	3 cut(s)	296, 362, 393
KroNI	GCCGGC	3 cut(s)	298, 364, 395
Kzo9I	GATC	3 cut(s)	159, 544, 810
LmnI	GCTCC	1 cut(s)	773
MaeI	CTAG	2 cut(s)	759, 814
MaeIII	GTNAC	3 cut(s)	479, 704, 746
MalI	GATC	3 cut(s)	161, 546, 812
MboI	GATC	3 cut(s)	159, 544, 810
MboII	GAAGA	3 cut(s)	62, 91, 341
MluCI	AATT	4 cut(s)	34, 66, 426, 584
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	8 cut(s)	130, 133, 202, 383, 583, 610, 703, 761
MroNI	GCCGGC	3 cut(s)	296, 362, 393
MseI	TTAA	2 cut(s)	324, 564
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	5 cut(s)	112, 297, 363, 394, 702
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	220, 326, 390
NaeI	GCCGGC	3 cut(s)	298, 364, 395
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	159, 544, 810
NgoMIV	GCCGGC	3 cut(s)	296, 362, 393
NlaIII	CATG	4 cut(s)	130, 142, 166, 663
NlaIV	GGNNCC	1 cut(s)	691
NmuCI	GTSAC	2 cut(s)	479, 746
NspI	RCATGY	1 cut(s)	663
PagI	TCATGA	1 cut(s)	162
PciI	ACATGT	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	2 cut(s)	155, 300
PdiI	GCCGGC	3 cut(s)	298, 364, 395
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	3 cut(s)	178, 302, 386
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	659
PspEI	GGTNACC	1 cut(s)	746
PspN4I	GGNNCC	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	154
RigI	GGCCGGCC	1 cut(s)	397
RsaI	GTAC	3 cut(s)	287, 462, 646
RsaNI	GTAC	3 cut(s)	286, 461, 645
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	324, 564
SatI	GCNGC	3 cut(s)	177, 301, 385
Sau3AI	GATC	3 cut(s)	159, 544, 810
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	313, 752
SmoI	CTYRAG	2 cut(s)	313, 752
SpeI	ACTAGT	1 cut(s)	758
Sse9I	AATT	4 cut(s)	34, 66, 426, 584
SsiI	CCGC	4 cut(s)	176, 301, 343, 384
SspMI	CTAG	2 cut(s)	759, 814
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	2 cut(s)	138, 447
TaaI	ACNGT	4 cut(s)	154, 266, 500, 629
TaqI	TCGA	2 cut(s)	158, 352
TasI	AATT	4 cut(s)	34, 66, 426, 584
TatI	WGTACW	2 cut(s)	285, 460
TauI	GCSGC	3 cut(s)	179, 303, 387
Tru1I	TTAA	2 cut(s)	324, 564
Tru9I	TTAA	2 cut(s)	324, 564
TscAI	CASTG	3 cut(s)	216, 271, 583
TseFI	GTSAC	2 cut(s)	479, 746
Tsp45I	GTSAC	2 cut(s)	479, 746
TspDTI	ATGAA	2 cut(s)	35, 179
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	3 cut(s)	216, 271, 583
Tth111I	GACNNNGTC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	66
XceI	RCATGY	1 cut(s)	663
XmiI	GTMKAC	1 cut(s)	502
XspI	CTAG	2 cut(s)	759, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.