Rroxscaffold_5G00354580

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
33070134 .. 33073485
3352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354580.1

Sequence Viewer

Length: 1173 bp
ATGGCTTCTTCTTCTTCTTCTTCAACTCCAGCGACAGCGACGACCACGACGACGACCGCGACGACGTCGTCTTCCGCCATGAAAAGAGTGACGCTCACTCTCACAACCTCATGCCGGAGCTTTCCTCTTCTCTTCCTCCTCCTGATTTCCACCAACATCACCGCCGGCGTCTCTCTCGACAACGCCGTCTTGAGCGTCAAGTACAAATACGCCGGCCGCGACCGCACTCTCAGCGCCCTAAAAGCTCACGACACCAAACGCACTCTCCGGTTTCTCGCCGGCGTTGATCTCCCTCTCGGCGGCTCCGGCCGCCCTGACGCCGTCGGATTATACTACGCTAAAATTGGAATAGGAACACCTCCTAGAGACTACTATGTCCAAGTTGATACCGGGAGTGATATTATGTGGGTCAACTGTATTCAATGCAAGGATTGCCCTCAAAGAAGCTCACTTGGTTTTGAGCTATCACTATATGATATCAAGCAGTCTTCCACTGGTAAACTGATTCCTTGTGATCAAGATTTTTGCGTGGCGGTGAATAATGGTCCATTGGCTGGATGTACGGCCAATATGTCATGTCCTTATTTACAAATTTACGGAGACGGCACCTCCACTGCTGGTTACTTTGTCAAAGATATTGTGTTGTATGACCAAGTGTCGGGTGACCTCAAGACTAGCTCTTCCAATGGGAGCGTCATTTTTGGGTGTGGTGCTACACAATCTGGAGATATAGGCTCATCTGGTGAAGAAGCACTTGATGGCATTCTTGGCTTTGGAAAGTCCAATTCATCCATAATTTCACAGCTAGCTTCATCAGGAAAAGTGAAGAAGATGTTTGCTCACTGCTTAGATGGAAAGAATGGAGGTGGTATATTTGCTATTGGGCGTGTTGTGCAGCCGAAAGTTAACATGACTCCATTGGTACCAAACCAGCTGCACTACAATGTCAATATGAAGGCAGTTCAAGTCGGCCATGCTTTCCTAAATATTTCTACAGATGTATTTGAAGCGGGAGATAGAAAAGGGACTATAATTGACAGCGGTACAACTTTAGCCTATCTTCCAGACGTCGTGTACGAGCCCTTAGTAAGTAAGATCTTCTCTCAGCAGCCTGATTTGAAAATTCACACTCTTCGTGGCGAGTATACATGCTTTGAGTACTCGGGAAGGTAA

Protein Analysis

390

Amino Acids

41.44

Weight (kDa)

8.2

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 111 - 295 9.9e-38 Xylanase inhibitor N-terminal
Asp PF00026 111 - 368 1.5e-13 Eukaryotic aspartyl protease
TAXi_C PF14541 313 - 374 2.2e-06 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 67, 185, 374
AatII GACGTC 2 cut(s) 68, 1071
Acc65I GGTACC 1 cut(s) 922
AccB1I GGYRCC 2 cut(s) 605, 922
AccB7I CCANNNNNTGG 1 cut(s) 554
AccI GTMKAC 1 cut(s) 1145
AccII CGCG 2 cut(s) 59, 219
AcoI YGGCCR 4 cut(s) 214, 307, 564, 970
AcsI RAATTY 2 cut(s) 591, 1122
AcyI GRCGYC 4 cut(s) 65, 168, 318, 1068
AfaI GTAC 6 cut(s) 203, 562, 924, 1045, 1076, 1160
AfiI CCNNNNNNNGG 4 cut(s) 114, 299, 554, 658
AgsI TTSAA 5 cut(s) 24, 422, 965, 1007, 1120
AhdI GACNNNNNGTC 1 cut(s) 655
AluBI AGCT 8 cut(s) 120, 245, 447, 463, 678, 805, 809, 934
AluI AGCT 8 cut(s) 120, 245, 447, 463, 678, 805, 809, 934
Alw26I GTCTC 3 cut(s) 175, 360, 594
Ama87I CYCGRG 1 cut(s) 1162
AoxI GGCC 4 cut(s) 214, 307, 564, 970
ApeKI GCWGC 3 cut(s) 895, 934, 1108
ApoI RAATTY 2 cut(s) 591, 1122
Asp718I GGTACC 1 cut(s) 922
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 4 cut(s) 151, 547, 674, 755
AsuNHI GCTAGC 1 cut(s) 805
AvaI CYCGRG 1 cut(s) 1162
AvaII GGWCC 1 cut(s) 545
BanI GGYRCC 2 cut(s) 605, 922
BanII GRGCYC 1 cut(s) 1083
BbsI GAAGAC 2 cut(s) 63, 480
BbvI GCAGC 3 cut(s) 907, 921, 1120
BccI CCATC 2 cut(s) 752, 845
BceAI ACGGC 4 cut(s) 170, 305, 579, 619
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 3 cut(s) 175, 360, 594
BfaI CTAG 3 cut(s) 363, 675, 806
BfmI CTRYAG 1 cut(s) 993
BfoI RGCGCY 1 cut(s) 237
BglII AGATCT 1 cut(s) 1095
BisI GCNGC 6 cut(s) 217, 301, 310, 896, 935, 1109
BlsI GCNGC 6 cut(s) 218, 302, 311, 897, 936, 1110
BmcAI AGTACT 1 cut(s) 1160
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 1 cut(s) 545
BmeRI GACNNNNNGTC 1 cut(s) 655
BmeT110I CYCGRG 1 cut(s) 1162
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 3 cut(s) 304, 607, 924
BmrFI CCNGG 1 cut(s) 391
BmtI GCTAGC 1 cut(s) 809
BpiI GAAGAC 2 cut(s) 63, 480
BplI GAGNNNNNCTC 4 cut(s) 78, 110, 109, 141
BpmI CTGGAG 2 cut(s) 12, 744
BpuEI CTTGAG 2 cut(s) 211, 653
BpuMI CCSGG 1 cut(s) 391
BsaHI GRCGYC 4 cut(s) 65, 168, 318, 1068
BsaWI WCCGGW 1 cut(s) 267
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 593, 623
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 299, 554, 658
Bse118I RCCGGY 3 cut(s) 164, 212, 278
Bse1I ACTGG 1 cut(s) 499
BseGI GGATG 2 cut(s) 563, 788
BseLI CCNNNNNNNGG 4 cut(s) 114, 299, 554, 658
BseMII CTCAG 2 cut(s) 244, 1118
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 1 cut(s) 128
BseX3I CGGCCG 2 cut(s) 214, 307
BseXI GCAGC 3 cut(s) 907, 921, 1120
BsgI GTGCAG 2 cut(s) 914, 920
Bsh1236I CGCG 2 cut(s) 59, 219
Bsh1285I CGRYCG 4 cut(s) 57, 217, 223, 310
BshFI GGCC 4 cut(s) 216, 309, 566, 972
BshNI GGYRCC 2 cut(s) 605, 922
BsiEI CGRYCG 4 cut(s) 57, 217, 223, 310
BsiHKCI CYCGRG 1 cut(s) 1162
BsiSI CCGG 7 cut(s) 115, 165, 213, 268, 279, 306, 390
BslFI GGGAC 1 cut(s) 1039
BslI CCNNNNNNNGG 4 cut(s) 114, 299, 554, 658
BsmAI GTCTC 3 cut(s) 175, 360, 594
BsmBI CGTCTC 2 cut(s) 175, 594
BsmFI GGGAC 1 cut(s) 1039
BsmI GAATGC 1 cut(s) 762
BsnI GGCC 4 cut(s) 216, 309, 566, 972
BsoBI CYCGRG 1 cut(s) 1162
Bsp1286I GDGCHC 1 cut(s) 1083
Bsp143I GATC 3 cut(s) 286, 514, 1095
BspANI GGCC 4 cut(s) 216, 309, 566, 972
BspCNI CTCAG 2 cut(s) 243, 1117
BspFNI CGCG 2 cut(s) 59, 219
BspLI GGNNCC 3 cut(s) 304, 607, 924
BspOI GCTAGC 1 cut(s) 809
BspQI GCTCTTC 1 cut(s) 685
BspT107I GGYRCC 2 cut(s) 605, 922
BsrFI RCCGGY 3 cut(s) 164, 212, 278
BsrI ACTGG 1 cut(s) 499
BssAI RCCGGY 3 cut(s) 164, 212, 278
BssMI GATC 3 cut(s) 286, 514, 1095
BssNAI GTATAC 1 cut(s) 1146
BssNI GRCGYC 4 cut(s) 65, 168, 318, 1068
Bst1107I GTATAC 1 cut(s) 1146
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 4 cut(s) 132, 137, 685, 1137
BstACI GRCGYC 4 cut(s) 65, 168, 318, 1068
BstAPI GCANNNNNTGC 1 cut(s) 432
BstC8I GCNNGC 4 cut(s) 166, 214, 280, 807
BstDEI CTNAG 4 cut(s) 230, 847, 1084, 1104
BstEII GGTNACC 1 cut(s) 662
BstF5I GGATG 2 cut(s) 563, 788
BstFNI CGCG 2 cut(s) 59, 219
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 3 cut(s) 289, 517, 1098
BstMAI GTCTC 3 cut(s) 175, 360, 594
BstMBI GATC 3 cut(s) 286, 514, 1095
BstMCI CGRYCG 4 cut(s) 57, 217, 223, 310
BstMWI GCNNNNNNNGC 8 cut(s) 222, 231, 242, 306, 309, 432, 768, 892
BstNSI RCATGY 1 cut(s) 1152
BstPI GGTNACC 1 cut(s) 662
BstSCI CCNGG 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 993
BstUI CGCG 2 cut(s) 59, 219
BstV1I GCAGC 3 cut(s) 907, 921, 1120
BstV2I GAAGAC 2 cut(s) 63, 480
BstX2I RGATCY 1 cut(s) 1095
BstYI RGATCY 1 cut(s) 1095
BstZ17I GTATAC 1 cut(s) 1146
BstZI CGGCCG 2 cut(s) 214, 307
BsuRI GGCC 4 cut(s) 216, 309, 566, 972
BtsCI GGATG 2 cut(s) 563, 788
BtsI GCAGTG 2 cut(s) 612, 841
BtsIMutI CAGTG 3 cut(s) 492, 612, 841
Cac8I GCNNGC 4 cut(s) 166, 214, 280, 807
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 3 cut(s) 164, 212, 278
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 5 cut(s) 100, 157, 184, 326, 682
Csp6I GTAC 6 cut(s) 202, 561, 923, 1044, 1075, 1159
CviAII CATG 6 cut(s) 79, 111, 576, 910, 974, 1149
CviQI GTAC 6 cut(s) 202, 561, 923, 1044, 1075, 1159
DdeI CTNAG 4 cut(s) 230, 847, 1084, 1104
DpnI GATC 3 cut(s) 288, 516, 1097
DpnII GATC 3 cut(s) 286, 514, 1095
DrdI GACNNNNNNGTC 3 cut(s) 67, 185, 374
DriI GACNNNNNGTC 1 cut(s) 655
DseDI GACNNNNNNGTC 3 cut(s) 67, 185, 374
EaeI YGGCCR 4 cut(s) 214, 307, 564, 970
EagI CGGCCG 2 cut(s) 214, 307
Eam1104I CTCTTC 4 cut(s) 132, 137, 685, 1137
Eam1105I GACNNNNNGTC 1 cut(s) 655
EarI CTCTTC 4 cut(s) 132, 137, 685, 1137
EciI GGCGGA 1 cut(s) 64
EclXI CGGCCG 2 cut(s) 214, 307
Eco24I GRGCYC 1 cut(s) 1083
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 545
Eco52I CGGCCG 2 cut(s) 214, 307
Eco88I CYCGRG 1 cut(s) 1162
Eco91I GGTNACC 1 cut(s) 662
EcoO65I GGTNACC 1 cut(s) 662
EcoRV GATATC 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 1083
Esp3I CGTCTC 2 cut(s) 175, 594
FaeI CATG 6 cut(s) 82, 114, 579, 913, 977, 1152
FalI AAGNNNNNCTT 2 cut(s) 738, 770
FaqI GGGAC 1 cut(s) 1039
FatI CATG 6 cut(s) 78, 110, 575, 909, 973, 1148
FauI CCCGC 1 cut(s) 1003
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 1 cut(s) 1145
Fnu4HI GCNGC 6 cut(s) 217, 301, 310, 896, 935, 1109
FokI GGATG 2 cut(s) 570, 775
FriOI GRGCYC 1 cut(s) 1083
Fsp4HI GCNGC 6 cut(s) 217, 301, 310, 896, 935, 1109
FspBI CTAG 3 cut(s) 363, 675, 806
GlaI GCGC 1 cut(s) 235
GluI GCNGC 6 cut(s) 217, 301, 310, 896, 935, 1109
GsuI CTGGAG 2 cut(s) 12, 744
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 4 cut(s) 216, 309, 566, 972
HapII CCGG 7 cut(s) 115, 165, 213, 268, 279, 306, 390
HgaI GACGC 5 cut(s) 100, 157, 184, 326, 682
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 4 cut(s) 65, 168, 318, 1068
Hin1II CATG 6 cut(s) 82, 114, 579, 913, 977, 1152
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 2 cut(s) 412, 907
HindII GTYRAC 2 cut(s) 412, 907
HinfI GANTC 2 cut(s) 505, 913
HpaI GTTAAC 1 cut(s) 907
HpaII CCGG 7 cut(s) 115, 165, 213, 268, 279, 306, 390
HphI GGTGA 4 cut(s) 151, 547, 674, 755
Hpy166II GTNNAC 5 cut(s) 412, 500, 907, 1075, 1146
Hpy188I TCNGA 1 cut(s) 326
Hpy8I GTNNAC 5 cut(s) 412, 500, 907, 1075, 1146
Hpy99I CGWCG 8 cut(s) 43, 52, 55, 64, 67, 70, 326, 1073
HpyAV CCTTC 2 cut(s) 949, 1161
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4IV ACGT 2 cut(s) 65, 1068
HpyCH4V TGCA 3 cut(s) 426, 895, 937
HpyF10VI GCNNNNNNNGC 8 cut(s) 222, 231, 242, 306, 309, 432, 768, 892
HpyF3I CTNAG 4 cut(s) 230, 847, 1084, 1104
HpySE526I ACGT 2 cut(s) 65, 1068
Hsp92I GRCGYC 4 cut(s) 65, 168, 318, 1068
Hsp92II CATG 6 cut(s) 82, 114, 579, 913, 977, 1152
HspAI GCGC 1 cut(s) 234
KpnI GGTACC 1 cut(s) 926
KroI GCCGGC 3 cut(s) 164, 212, 278
KroNI GCCGGC 3 cut(s) 166, 214, 280
Ksp22I TGATCA 1 cut(s) 514
KspAI GTTAAC 1 cut(s) 907
Kzo9I GATC 3 cut(s) 286, 514, 1095
LguI GCTCTTC 1 cut(s) 685
LmnI GCTCC 3 cut(s) 117, 308, 690
Lsp1109I GCAGC 3 cut(s) 907, 921, 1120
MaeI CTAG 3 cut(s) 363, 675, 806
MaeII ACGT 2 cut(s) 65, 1068
MaeIII GTNAC 3 cut(s) 88, 620, 662
MalI GATC 3 cut(s) 288, 516, 1097
MboI GATC 3 cut(s) 286, 514, 1095
MflI RGATCY 1 cut(s) 1095
MhlI GDGCHC 1 cut(s) 1083
MluCI AATT 6 cut(s) 342, 591, 784, 795, 1032, 1122
MlyI GAGTC 1 cut(s) 907
MmeI TCCRAC 1 cut(s) 304
MreI CGCCGGCG 2 cut(s) 164, 278
MroNI GCCGGC 3 cut(s) 164, 212, 278
MseI TTAA 1 cut(s) 906
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 2 cut(s) 934, 1041
MspI CCGG 7 cut(s) 115, 165, 213, 268, 279, 306, 390
MspR9I CCNGG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 762
MvnI CGCG 2 cut(s) 59, 219
MwoI GCNNNNNNNGC 8 cut(s) 222, 231, 242, 306, 309, 432, 768, 892
NaeI GCCGGC 3 cut(s) 166, 214, 280
NciI CCSGG 1 cut(s) 391
NdeII GATC 3 cut(s) 286, 514, 1095
NgoMIV GCCGGC 3 cut(s) 164, 212, 278
NheI GCTAGC 1 cut(s) 805
NlaIII CATG 6 cut(s) 82, 114, 579, 913, 977, 1152
NlaIV GGNNCC 3 cut(s) 304, 607, 924
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 2 cut(s) 88, 662
NspI RCATGY 1 cut(s) 1152
PciSI GCTCTTC 1 cut(s) 685
PcsI WCGNNNNNNNCGW 6 cut(s) 47, 56, 59, 183, 216, 1074
PctI GAATGC 1 cut(s) 762
PdiI GCCGGC 3 cut(s) 166, 214, 280
PfeI GAWTC 1 cut(s) 505
PflFI GACNNNGTC 3 cut(s) 64, 67, 320
PflMI CCANNNNNTGG 1 cut(s) 554
PkrI GCNGC 6 cut(s) 218, 302, 311, 897, 936, 1110
PleI GAGTC 1 cut(s) 907
PpsI GAGTC 1 cut(s) 907
PspEI GGTNACC 1 cut(s) 662
PspN4I GGNNCC 3 cut(s) 304, 607, 924
PspPI GGNCC 1 cut(s) 545
PsuI RGATCY 1 cut(s) 1095
PsyI GACNNNGTC 3 cut(s) 64, 67, 320
PvuII CAGCTG 1 cut(s) 934
RsaI GTAC 6 cut(s) 203, 562, 924, 1045, 1076, 1160
RsaNI GTAC 6 cut(s) 202, 561, 923, 1044, 1075, 1159
RseI CAYNNNNRTG 1 cut(s) 942
SapI GCTCTTC 1 cut(s) 685
SaqAI TTAA 1 cut(s) 906
SatI GCNGC 6 cut(s) 217, 301, 310, 896, 935, 1109
Sau3AI GATC 3 cut(s) 286, 514, 1095
Sau96I GGNCC 1 cut(s) 545
ScaI AGTACT 1 cut(s) 1160
SchI GAGTC 1 cut(s) 907
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 1 cut(s) 1083
SfcI CTRYAG 1 cut(s) 993
SgrAI CRCCGGYG 2 cut(s) 164, 278
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 942
SmlI CTYRAG 2 cut(s) 190, 668
SmoI CTYRAG 2 cut(s) 190, 668
Sse9I AATT 6 cut(s) 342, 591, 784, 795, 1032, 1122
SspI AATATT 1 cut(s) 988
SspMI CTAG 3 cut(s) 363, 675, 806
StyD4I CCNGG 1 cut(s) 389
TaaI ACNGT 1 cut(s) 416
TaiI ACGT 2 cut(s) 68, 1071
TaqI TCGA 1 cut(s) 177
TasI AATT 6 cut(s) 342, 591, 784, 795, 1032, 1122
TatI WGTACW 2 cut(s) 201, 1158
TauI GCSGC 3 cut(s) 219, 303, 312
TfiI GAWTC 1 cut(s) 505
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 3 cut(s) 499, 619, 848
TseFI GTSAC 2 cut(s) 88, 662
TseI GCWGC 3 cut(s) 895, 934, 1108
Tsp45I GTSAC 2 cut(s) 88, 662
TspDTI ATGAA 4 cut(s) 95, 777, 801, 968
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 3 cut(s) 499, 619, 848
Tth111I GACNNNGTC 3 cut(s) 64, 67, 320
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 2 cut(s) 591, 1122
XceI RCATGY 1 cut(s) 1152
XmiI GTMKAC 1 cut(s) 1145
XspI CTAG 3 cut(s) 363, 675, 806
ZraI GACGTC 2 cut(s) 66, 1069
ZrmI AGTACT 1 cut(s) 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.