Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005214

Physical Location & Seq

Genomic Coordinates Forward (+)

30817646 .. 30832827

Gene Structure 15182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCACCGAATCTTCCTCCTCCTCTATGAAAGACGCCTTCTCCCAGTACGCCGATTACCTCAATAACCAAAATGATAAACGTGAAAGAATCGTGAAAGCGAGTCGGGATATCACCATGAACAGCAAAGAGGTCATCTTTCAAGTCCACAGAATGAGCAAGCACAACAGAGAGAAGGTTCTGCAGAAAGCCGAAAAGGATTTAGCCGCCGTGACGGATCAGTTCGTGGCCCGGCTAGTTAAAGAGCTGCAAGGGACTGATTTTTGGAAGCTACGACGAGCATACTCGCCTGGGTTTTACTCAATTTGGCCACCAAGACAGCCAACATGGATGGTATCCGCTCTGATTGATAAGCTTGATACGCCGCACTACAATGTCAATATGAAGGCAGTTCAAGTCGGCCATGCTTTCCTAAATATTTCTACAGATGTATTTGAAGCGGGAGATAGAAAAGGGACTATAATTGACAGCGGTACAACTTTGGCCTATCTTCCAGACATCGTGTACGAGCCCTTAGTAAGTCAGATCTTCTCTCAGCAGCCTCATATGAAAATTCAGACTCTTCGTGGCGAGTATACATGCTTTGAGTACTCGGGAAGTTTCACACAATGCCTACCAAGAAAAGTTCATAAACTATGGATAACATGTAGAAGGTGCAAACAGGAAGGCAGAAGTACAAACGAGCGAAAACTCAAGGTCAAGAAGAATGATAAAGACCACAAATATAACAAAGGAGAAGATACTAAAAAAGTTGTAGTACAAAATCAATATCAACATTTACTTGCTAAAAAAGTTGAAAATGTTTTTGGGATGTCAATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

274

Amino Acids

31.8

Weight (kDa)

9.57

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Translin	PF01997	26 - 99	2.8e-14	Translin family
TAXi_C	PF14541	123 - 199	5.6e-07	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05840
fragaria_vesca	FvH4_4g12250 FvH4_4g12250 FvH4_4g12250
malus_domestica	MD04G1028200.v1.1
prunus_persica	Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1
pyrus_communis	pycom04g02480 pycom13g29440 pycom13g29450
rosa_chinensis	RchiOBHm_Chr4g0410011 RchiOBHm_Chr4g0410051
rosa_laevigata	RLG00000008506
rosa_multiflora	Rmu_sc0000023.1_g000006 Rmu_sc0019088.1_g000003 Rmu_sc0026249.1_g000001 Rmu_ssc0000186.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354520 Rroxscaffold_5G00354580
rosa_rugosa	Rorug04G0100700 Rorug04G0100800
rosa_samantha	Rh4AG159000 Rh4BG158300 Rh4BG172300 Rh4CG170300 Rh4DG154100 Rh6BG295000
rosa_wichuraiana	Rw4G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	575
AciI	CCGC	5 cut(s)	207, 339, 365, 440, 471
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	3 cut(s)	3, 308, 400
AcsI	RAATTY	1 cut(s)	552
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	6 cut(s)	50, 475, 506, 590, 676, 759
AflIII	ACRYGT	1 cut(s)	644
AgsI	TTSAA	4 cut(s)	143, 395, 437, 797
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	789, 821
AluBI	AGCT	3 cut(s)	247, 271, 355
AluI	AGCT	3 cut(s)	247, 271, 355
AlwI	GGATC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	5 cut(s)	3, 228, 308, 400, 483
ApeKI	GCWGC	2 cut(s)	247, 538
ApoI	RAATTY	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	229
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	592
BalI	TGGCCA	2 cut(s)	5, 310
BanII	GRGCYC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	234, 550
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	232
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	2 cut(s)	182, 423
BfuI	GTATCC	1 cut(s)	346
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	4 cut(s)	207, 248, 365, 539
BlsI	GCNGC	4 cut(s)	208, 249, 366, 540
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	2 cut(s)	232, 291
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	232, 291
BmrI	ACTGGG	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	677
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	336, 816
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	2 cut(s)	10, 13
BseXI	GCAGC	2 cut(s)	234, 550
BshFI	GGCC	5 cut(s)	5, 230, 310, 402, 485
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	232
BslFI	GGGAC	2 cut(s)	268, 469
BsmFI	GGGAC	2 cut(s)	268, 469
BsnI	GGCC	5 cut(s)	5, 230, 310, 402, 485
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	2 cut(s)	217, 525
BspACI	CCGC	5 cut(s)	207, 339, 365, 440, 471
BspANI	GGCC	5 cut(s)	5, 230, 310, 402, 485
BspCNI	CTCAG	1 cut(s)	547
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	225
BsrBI	CCGCTC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	2 cut(s)	217, 525
BssNAI	GTATAC	1 cut(s)	576
BssNI	GRCGYC	1 cut(s)	36
Bst1107I	GTATAC	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	567
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	514, 534
BstF5I	GGATG	2 cut(s)	336, 816
BstKTI	GATC	2 cut(s)	220, 528
BstMBI	GATC	2 cut(s)	217, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	2 cut(s)	582, 648
BstSCI	CCNGG	2 cut(s)	230, 289
BstSFI	CTRYAG	2 cut(s)	182, 423
BstV1I	GCAGC	2 cut(s)	234, 550
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BstZ17I	GTATAC	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	5 cut(s)	5, 230, 310, 402, 485
BtsCI	GGATG	2 cut(s)	336, 816
Cac8I	GCNNGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	6 cut(s)	49, 474, 505, 589, 675, 758
CviAII	CATG	5 cut(s)	118, 327, 404, 579, 645
CviQI	GTAC	6 cut(s)	49, 474, 505, 589, 675, 758
DdeI	CTNAG	2 cut(s)	514, 534
DpnI	GATC	2 cut(s)	219, 527
DpnII	GATC	2 cut(s)	217, 525
EaeI	YGGCCR	3 cut(s)	3, 308, 400
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	513
FaeI	CATG	5 cut(s)	121, 330, 407, 582, 648
FaqI	GGGAC	2 cut(s)	268, 469
FatI	CATG	5 cut(s)	117, 326, 403, 578, 644
FauI	CCCGC	1 cut(s)	433
FauNDI	CATATG	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	4 cut(s)	207, 248, 365, 539
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	4 cut(s)	207, 248, 365, 539
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	4 cut(s)	207, 248, 365, 539
HaeIII	GGCC	5 cut(s)	5, 230, 310, 402, 485
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	5 cut(s)	121, 330, 407, 582, 648
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	11, 90, 103, 559
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	3 cut(s)	148, 505, 576
Hpy188I	TCNGA	3 cut(s)	345, 525, 558
Hpy188III	TCNNGA	5 cut(s)	94, 107, 494, 594, 700
Hpy8I	GTNNAC	3 cut(s)	148, 505, 576
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	5 cut(s)	49, 169, 379, 645, 659
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	184, 250, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	2 cut(s)	514, 534
HpySE526I	ACGT	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	121, 330, 407, 582, 648
Kzo9I	GATC	2 cut(s)	217, 525
LpnPI	CCDG	6 cut(s)	59, 245, 276, 303, 507, 647
Lsp1109I	GCAGC	2 cut(s)	234, 550
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	219, 527
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	2 cut(s)	217, 525
MboII	GAAGA	6 cut(s)	6, 482, 520, 554, 715, 749
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	2 cut(s)	5, 310
MluCI	AATT	3 cut(s)	303, 462, 552
MluNI	TGGCCA	2 cut(s)	5, 310
MlyI	GAGTC	2 cut(s)	112, 553
MnlI	CCTC	6 cut(s)	28, 31, 34, 71, 124, 552
Mox20I	TGGCCA	2 cut(s)	5, 310
MscI	TGGCCA	2 cut(s)	5, 310
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	2 cut(s)	5, 310
MspA1I	CMGCKG	1 cut(s)	471
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	2 cut(s)	232, 291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	2 cut(s)	217, 525
NlaIII	CATG	5 cut(s)	121, 330, 407, 582, 648
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	2 cut(s)	582, 648
PciI	ACATGT	1 cut(s)	644
PfeI	GAWTC	2 cut(s)	11, 90
PkrI	GCNGC	4 cut(s)	208, 249, 366, 540
PleI	GAGTC	2 cut(s)	111, 553
PpsI	GAGTC	2 cut(s)	111, 553
PscI	ACATGT	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	525
RsaI	GTAC	6 cut(s)	50, 475, 506, 590, 676, 759
RsaNI	GTAC	6 cut(s)	49, 474, 505, 589, 675, 758
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	4 cut(s)	207, 248, 365, 539
Sau3AI	GATC	2 cut(s)	217, 525
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	2 cut(s)	112, 553
ScrFI	CCNGG	2 cut(s)	232, 291
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	9 cut(s)	63, 85, 135, 180, 249, 273, 357, 656, 699
SfcI	CTRYAG	2 cut(s)	182, 423
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	3 cut(s)	303, 462, 552
SsiI	CCGC	5 cut(s)	207, 339, 365, 440, 471
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	230, 289
TaiI	ACGT	1 cut(s)	85
TasI	AATT	3 cut(s)	303, 462, 552
TatI	WGTACW	3 cut(s)	588, 674, 757
TauI	GCSGC	2 cut(s)	209, 367
TfiI	GAWTC	2 cut(s)	11, 90
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	247, 538
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	5 cut(s)	44, 134, 398, 563, 617
TspGWI	ACGGA	1 cut(s)	230
XapI	RAATTY	1 cut(s)	552
XceI	RCATGY	2 cut(s)	582, 648
XmiI	GTMKAC	1 cut(s)	575
XspI	CTAG	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.