Rh4AG159000

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
40375407 .. 40382795
7389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG159000.1

Sequence Viewer

Length: 1176 bp
ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACTCCAGCGACGACCACGACGACGACCGCGACGACGCCGTCTTCCGCCATGAAAAGAGTCGCGCTCATTCTCACAACGTCGTGCCGGAGCTTTCCTCTTCTCTTCCTCCTCCTGATTTCCACCAACATCACCGCCGGCGTCGCTCTCGACAACGCCGTCTTGAGCGTCAAGTACAAATACGCCGGCCGGGACCGCACTCTCAGCGCCCTAAAAGCTCACGACACCAAACGCACTCTCCGATTTCTCGCCGGCGTCGATCTCCCTCTCGGCGGCTCGGGCCGCCCTGACGCCGTTGGATTATACTATGCTCAAATTGGAATAGGAACACCTCCTAGAGACTACTATGTACAAGTTGATACTGGAAGTGATATTATGTGGGTCAACTGTATTCAATGCAAGGATTGCCCTCAAAGAAGCTCACTTGGTTTTGAGCTATCACTATATGATATCAAGCAGTCTTCCACTGGTAAACTGATTCCTTGTGATCAAGAGTTTTGCATGGCGGTGAATAATGGTCCATTGGCTGGATGTACGGCCAATATGTCATGTCCTTATTTACAAATTTACGGAGACGGCACCTCCACTGCTGGTTACTTTGTCAAAGATATTGTGTTGTATGACCAAGTGTCGGGTGACCTCAAGACTAGCTCTTCCAATGGGAGCGTCATTTTTGGGTGTGGTGCTACACAATCTGGTGATATAGGCTCATCTGGTGAAGAAGCACTTGATGGAATTCTTGGCTTTGGAAAGTCCAATTCATCCATAATTTCACAGCTAGCTTCATCAGGAAAAGTGAAGAAGATGTTTGCTCACTGCTTAGATGGAAAGAATGGAGGCGGTATCTTTGCTATTGGGCGTGTTGTGCAGCCGAAAGTTAACATGACTCCATTGGTACCAAACCAGCCGCACTACAATGTCAATATGAAGGCAGTTCAAGTTGGCCATGCTTTCCTAAATATTTCTACAGATGTATTTGAAGCGGGAGATAGAAAAGGGACTATAATTGACAGCGGTACAACTTTGGCCTATCTTCCAGACGTGGTGTACGAGCCCTTAGTAAGTAAGATCTTATCTCAGCAGCCTGATTTGAAAATTCACACTCTTCGTGGCGAGTATACATGCTTTGAGTACTCGGGAAGGTAA

Protein Analysis

391

Amino Acids

41.5

Weight (kDa)

7.93

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 112 - 296 6.8e-38 Xylanase inhibitor N-terminal
Asp PF00026 112 - 371 6.5e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 314 - 386 1.3e-06 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 70, 188
Acc65I GGTACC 1 cut(s) 925
AccB1I GGYRCC 2 cut(s) 608, 925
AccB7I CCANNNNNTGG 1 cut(s) 557
AccI GTMKAC 1 cut(s) 1148
AccII CGCG 2 cut(s) 62, 95
AcoI YGGCCR 3 cut(s) 217, 567, 973
AcsI RAATTY 3 cut(s) 594, 765, 1125
AcyI GRCGYC 4 cut(s) 68, 171, 285, 321
AfaI GTAC 7 cut(s) 206, 381, 565, 927, 1048, 1079, 1163
AfiI CCNNNNNNNGG 3 cut(s) 302, 557, 661
AgsI TTSAA 5 cut(s) 33, 425, 968, 1010, 1123
AhdI GACNNNNNGTC 1 cut(s) 658
AjiI CACGTC 1 cut(s) 1072
AluBI AGCT 7 cut(s) 123, 248, 450, 466, 681, 808, 812
AluI AGCT 7 cut(s) 123, 248, 450, 466, 681, 808, 812
Alw26I GTCTC 2 cut(s) 363, 597
Ama87I CYCGRG 2 cut(s) 307, 1165
AoxI GGCC 5 cut(s) 217, 310, 567, 973, 1056
ApeKI GCWGC 2 cut(s) 898, 1111
ApoI RAATTY 3 cut(s) 594, 765, 1125
Asp718I GGTACC 1 cut(s) 925
AspLEI GCGC 2 cut(s) 97, 239
AspS9I GGNCC 3 cut(s) 223, 310, 548
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 5 cut(s) 154, 550, 677, 740, 758
AsuNHI GCTAGC 1 cut(s) 808
AvaI CYCGRG 2 cut(s) 307, 1165
AvaII GGWCC 2 cut(s) 223, 548
BalI TGGCCA 1 cut(s) 975
BanI GGYRCC 2 cut(s) 608, 925
BanII GRGCYC 1 cut(s) 1086
BbsI GAAGAC 2 cut(s) 66, 483
BbvI GCAGC 2 cut(s) 910, 1123
BccI CCATC 2 cut(s) 755, 848
BceAI ACGGC 5 cut(s) 55, 173, 308, 582, 622
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 363, 597
BfaI CTAG 3 cut(s) 366, 678, 809
BfmI CTRYAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 240
BglII AGATCT 1 cut(s) 1098
BisI GCNGC 5 cut(s) 304, 313, 899, 938, 1112
BlsI GCNGC 5 cut(s) 305, 314, 900, 939, 1113
BmcAI AGTACT 1 cut(s) 1163
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 2 cut(s) 223, 548
BmeRI GACNNNNNGTC 1 cut(s) 658
BmeT110I CYCGRG 2 cut(s) 307, 1165
BmgBI CACGTC 1 cut(s) 1072
BmgT120I GGNCC 3 cut(s) 223, 310, 548
BmiI GGNNCC 3 cut(s) 224, 610, 927
BmrFI CCNGG 1 cut(s) 221
BmtI GCTAGC 1 cut(s) 812
BpiI GAAGAC 2 cut(s) 66, 483
BplI GAGNNNNNCTC 4 cut(s) 81, 113, 112, 144
BpmI CTGGAG 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 214, 656
BpuMI CCSGG 1 cut(s) 221
BsaHI GRCGYC 4 cut(s) 68, 171, 285, 321
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 596, 626
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 557, 661
Bse118I RCCGGY 3 cut(s) 167, 215, 281
Bse1I ACTGG 2 cut(s) 397, 502
BseGI GGATG 2 cut(s) 566, 791
BseLI CCNNNNNNNGG 3 cut(s) 302, 557, 661
BseMII CTCAG 2 cut(s) 247, 1121
BseNI ACTGG 2 cut(s) 397, 502
BseRI GAGGAG 1 cut(s) 131
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 910, 1123
BsgI GTGCAG 1 cut(s) 917
Bsh1236I CGCG 2 cut(s) 62, 95
Bsh1285I CGRYCG 2 cut(s) 60, 220
BshFI GGCC 5 cut(s) 219, 312, 569, 975, 1058
BshNI GGYRCC 2 cut(s) 608, 925
BsiEI CGRYCG 2 cut(s) 60, 220
BsiHKCI CYCGRG 2 cut(s) 307, 1165
BsiSI CCGG 5 cut(s) 118, 168, 216, 220, 282
BslFI GGGAC 2 cut(s) 236, 1042
BslI CCNNNNNNNGG 3 cut(s) 302, 557, 661
BsmAI GTCTC 2 cut(s) 363, 597
BsmBI CGTCTC 1 cut(s) 597
BsmFI GGGAC 2 cut(s) 236, 1042
BsnI GGCC 5 cut(s) 219, 312, 569, 975, 1058
BsoBI CYCGRG 2 cut(s) 307, 1165
Bsp1286I GDGCHC 1 cut(s) 1086
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 3 cut(s) 289, 517, 1098
BspANI GGCC 5 cut(s) 219, 312, 569, 975, 1058
BspCNI CTCAG 2 cut(s) 246, 1120
BspFNI CGCG 2 cut(s) 62, 95
BspLI GGNNCC 3 cut(s) 224, 610, 927
BspOI GCTAGC 1 cut(s) 812
BspQI GCTCTTC 1 cut(s) 688
BspT107I GGYRCC 2 cut(s) 608, 925
BsrFI RCCGGY 3 cut(s) 167, 215, 281
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 2 cut(s) 397, 502
BssAI RCCGGY 3 cut(s) 167, 215, 281
BssMI GATC 3 cut(s) 289, 517, 1098
BssNAI GTATAC 1 cut(s) 1149
BssNI GRCGYC 4 cut(s) 68, 171, 285, 321
Bst1107I GTATAC 1 cut(s) 1149
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 4 cut(s) 135, 140, 688, 1140
BstACI GRCGYC 4 cut(s) 68, 171, 285, 321
BstAPI GCANNNNNTGC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 4 cut(s) 169, 217, 283, 810
BstDEI CTNAG 4 cut(s) 233, 850, 1087, 1107
BstEII GGTNACC 1 cut(s) 665
BstF5I GGATG 2 cut(s) 566, 791
BstFNI CGCG 2 cut(s) 62, 95
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 2 cut(s) 97, 239
BstKTI GATC 3 cut(s) 292, 520, 1101
BstMAI GTCTC 2 cut(s) 363, 597
BstMBI GATC 3 cut(s) 289, 517, 1098
BstMCI CGRYCG 2 cut(s) 60, 220
BstMWI GCNNNNNNNGC 8 cut(s) 173, 225, 234, 245, 309, 312, 435, 895
BstNSI RCATGY 1 cut(s) 1155
BstPI GGTNACC 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 996
BstUI CGCG 2 cut(s) 62, 95
BstV1I GCAGC 2 cut(s) 910, 1123
BstV2I GAAGAC 2 cut(s) 66, 483
BstX2I RGATCY 1 cut(s) 1098
BstYI RGATCY 1 cut(s) 1098
BstZ17I GTATAC 1 cut(s) 1149
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 5 cut(s) 219, 312, 569, 975, 1058
BtrI CACGTC 1 cut(s) 1072
BtsCI GGATG 2 cut(s) 566, 791
BtsI GCAGTG 2 cut(s) 615, 844
BtsIMutI CAGTG 3 cut(s) 495, 615, 844
Cac8I GCNNGC 4 cut(s) 169, 217, 283, 810
CfoI GCGC 2 cut(s) 97, 239
Cfr10I RCCGGY 3 cut(s) 167, 215, 281
Cfr13I GGNCC 3 cut(s) 223, 310, 548
CseI GACGC 6 cut(s) 76, 160, 187, 274, 329, 685
Csp6I GTAC 7 cut(s) 205, 380, 564, 926, 1047, 1078, 1162
CviAII CATG 6 cut(s) 82, 532, 579, 913, 977, 1152
CviQI GTAC 7 cut(s) 205, 380, 564, 926, 1047, 1078, 1162
DdeI CTNAG 4 cut(s) 233, 850, 1087, 1107
DpnI GATC 3 cut(s) 291, 519, 1100
DpnII GATC 3 cut(s) 289, 517, 1098
DrdI GACNNNNNNGTC 2 cut(s) 70, 188
DriI GACNNNNNGTC 1 cut(s) 658
DseDI GACNNNNNNGTC 2 cut(s) 70, 188
EaeI YGGCCR 3 cut(s) 217, 567, 973
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 4 cut(s) 135, 140, 688, 1140
Eam1105I GACNNNNNGTC 1 cut(s) 658
EarI CTCTTC 4 cut(s) 135, 140, 688, 1140
EciI GGCGGA 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 1086
Eco32I GATATC 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 223, 548
Eco52I CGGCCG 1 cut(s) 217
Eco88I CYCGRG 2 cut(s) 307, 1165
Eco91I GGTNACC 1 cut(s) 665
EcoO65I GGTNACC 1 cut(s) 665
EcoRI GAATTC 1 cut(s) 765
EcoRV GATATC 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 1086
Esp3I CGTCTC 1 cut(s) 597
FaeI CATG 6 cut(s) 85, 535, 582, 916, 980, 1155
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 2 cut(s) 236, 1042
FatI CATG 6 cut(s) 81, 531, 578, 912, 976, 1151
FauI CCCGC 1 cut(s) 1006
FbaI TGATCA 1 cut(s) 517
FblI GTMKAC 1 cut(s) 1148
Fnu4HI GCNGC 5 cut(s) 304, 313, 899, 938, 1112
FokI GGATG 2 cut(s) 573, 778
FriOI GRGCYC 1 cut(s) 1086
Fsp4HI GCNGC 5 cut(s) 304, 313, 899, 938, 1112
FspBI CTAG 3 cut(s) 366, 678, 809
GlaI GCGC 2 cut(s) 96, 238
GluI GCNGC 5 cut(s) 304, 313, 899, 938, 1112
GsuI CTGGAG 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 5 cut(s) 219, 312, 569, 975, 1058
HapII CCGG 5 cut(s) 118, 168, 216, 220, 282
HgaI GACGC 6 cut(s) 76, 160, 187, 274, 329, 685
HhaI GCGC 2 cut(s) 97, 239
Hin1I GRCGYC 4 cut(s) 68, 171, 285, 321
Hin1II CATG 6 cut(s) 85, 535, 582, 916, 980, 1155
Hin6I GCGC 2 cut(s) 95, 237
HinP1I GCGC 2 cut(s) 95, 237
HincII GTYRAC 2 cut(s) 415, 910
HindII GTYRAC 2 cut(s) 415, 910
HinfI GANTC 3 cut(s) 90, 508, 916
HpaI GTTAAC 1 cut(s) 910
HpaII CCGG 5 cut(s) 118, 168, 216, 220, 282
HphI GGTGA 5 cut(s) 154, 550, 677, 740, 758
Hpy166II GTNNAC 5 cut(s) 415, 503, 910, 1078, 1149
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 9 cut(s) 145, 179, 193, 251, 521, 673, 819, 1067, 1167
Hpy8I GTNNAC 5 cut(s) 415, 503, 910, 1078, 1149
Hpy99I CGWCG 8 cut(s) 46, 55, 58, 67, 70, 115, 176, 290
HpyAV CCTTC 2 cut(s) 952, 1164
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 2 cut(s) 110, 1071
HpyCH4V TGCA 3 cut(s) 429, 531, 898
HpyF10VI GCNNNNNNNGC 8 cut(s) 173, 225, 234, 245, 309, 312, 435, 895
HpyF3I CTNAG 4 cut(s) 233, 850, 1087, 1107
HpySE526I ACGT 2 cut(s) 110, 1071
Hsp92I GRCGYC 4 cut(s) 68, 171, 285, 321
Hsp92II CATG 6 cut(s) 85, 535, 582, 916, 980, 1155
HspAI GCGC 2 cut(s) 95, 237
KpnI GGTACC 1 cut(s) 929
KroI GCCGGC 3 cut(s) 167, 215, 281
KroNI GCCGGC 3 cut(s) 169, 217, 283
Ksp22I TGATCA 1 cut(s) 517
KspAI GTTAAC 1 cut(s) 910
Kzo9I GATC 3 cut(s) 289, 517, 1098
LguI GCTCTTC 1 cut(s) 688
LmnI GCTCC 2 cut(s) 120, 693
Lsp1109I GCAGC 2 cut(s) 910, 1123
MaeI CTAG 3 cut(s) 366, 678, 809
MaeII ACGT 2 cut(s) 110, 1071
MaeIII GTNAC 2 cut(s) 623, 665
MalI GATC 3 cut(s) 291, 519, 1100
MboI GATC 3 cut(s) 289, 517, 1098
MflI RGATCY 1 cut(s) 1098
MhlI GDGCHC 1 cut(s) 1086
MlsI TGGCCA 1 cut(s) 975
MluCI AATT 7 cut(s) 345, 594, 765, 787, 798, 1035, 1125
MluNI TGGCCA 1 cut(s) 975
MlyI GAGTC 2 cut(s) 99, 910
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 9 cut(s) 138, 149, 152, 306, 372, 450, 622, 680, 860
Mox20I TGGCCA 1 cut(s) 975
MreI CGCCGGCG 2 cut(s) 167, 281
MroNI GCCGGC 3 cut(s) 167, 215, 281
MscI TGGCCA 1 cut(s) 975
MseI TTAA 1 cut(s) 909
MslI CAYNNNNRTG 2 cut(s) 536, 945
Msp20I TGGCCA 1 cut(s) 975
MspA1I CMGCKG 1 cut(s) 1044
MspI CCGG 5 cut(s) 118, 168, 216, 220, 282
MspR9I CCNGG 1 cut(s) 221
MvnI CGCG 2 cut(s) 62, 95
MwoI GCNNNNNNNGC 8 cut(s) 173, 225, 234, 245, 309, 312, 435, 895
NaeI GCCGGC 3 cut(s) 169, 217, 283
NciI CCSGG 1 cut(s) 221
NdeII GATC 3 cut(s) 289, 517, 1098
NgoMIV GCCGGC 3 cut(s) 167, 215, 281
NheI GCTAGC 1 cut(s) 808
NlaIII CATG 6 cut(s) 85, 535, 582, 916, 980, 1155
NlaIV GGNNCC 3 cut(s) 224, 610, 927
NmeAIII GCCGAG 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 665
NspI RCATGY 1 cut(s) 1155
PciSI GCTCTTC 1 cut(s) 688
PcsI WCGNNNNNNNCGW 7 cut(s) 50, 59, 62, 186, 268, 285, 1077
PdiI GCCGGC 3 cut(s) 169, 217, 283
PfeI GAWTC 1 cut(s) 508
PflFI GACNNNGTC 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 557
PkrI GCNGC 5 cut(s) 305, 314, 900, 939, 1113
PleI GAGTC 2 cut(s) 98, 910
PpsI GAGTC 2 cut(s) 98, 910
PspEI GGTNACC 1 cut(s) 665
PspN4I GGNNCC 3 cut(s) 224, 610, 927
PspPI GGNCC 3 cut(s) 223, 310, 548
PsuI RGATCY 1 cut(s) 1098
PsyI GACNNNGTC 1 cut(s) 70
RsaI GTAC 7 cut(s) 206, 381, 565, 927, 1048, 1079, 1163
RsaNI GTAC 7 cut(s) 205, 380, 564, 926, 1047, 1078, 1162
RseI CAYNNNNRTG 2 cut(s) 536, 945
SapI GCTCTTC 1 cut(s) 688
SaqAI TTAA 1 cut(s) 909
SatI GCNGC 5 cut(s) 304, 313, 899, 938, 1112
Sau3AI GATC 3 cut(s) 289, 517, 1098
Sau96I GGNCC 3 cut(s) 223, 310, 548
ScaI AGTACT 1 cut(s) 1163
SchI GAGTC 2 cut(s) 99, 910
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 1086
SfcI CTRYAG 1 cut(s) 996
SgrAI CRCCGGYG 2 cut(s) 167, 281
SinI GGWCC 2 cut(s) 223, 548
SmiMI CAYNNNNRTG 2 cut(s) 536, 945
SmlI CTYRAG 2 cut(s) 193, 671
SmoI CTYRAG 2 cut(s) 193, 671
Sse9I AATT 7 cut(s) 345, 594, 765, 787, 798, 1035, 1125
SspI AATATT 1 cut(s) 991
SspMI CTAG 3 cut(s) 366, 678, 809
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 2 cut(s) 113, 1074
TaqI TCGA 2 cut(s) 180, 288
TasI AATT 7 cut(s) 345, 594, 765, 787, 798, 1035, 1125
TatI WGTACW 3 cut(s) 204, 379, 1161
TauI GCSGC 3 cut(s) 306, 315, 940
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 1 cut(s) 909
Tru9I TTAA 1 cut(s) 909
TscAI CASTG 3 cut(s) 502, 622, 851
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 2 cut(s) 898, 1111
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 4 cut(s) 98, 780, 804, 971
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 3 cut(s) 502, 622, 851
Tth111I GACNNNGTC 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 557
VpaK11BI GGWCC 2 cut(s) 223, 548
XapI RAATTY 3 cut(s) 594, 765, 1125
XceI RCATGY 1 cut(s) 1155
XmiI GTMKAC 1 cut(s) 1148
XspI CTAG 3 cut(s) 366, 678, 809
ZrmI AGTACT 1 cut(s) 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.