Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005214

Physical Location & Seq

Genomic Coordinates Reverse (-)

32984983 .. 33009392

Gene Structure 24410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTACGAGGAGGATCAGCTTTTCTCGAAGCAAATACAGAGAACGTGCCTTGTCGGTGGAAGGTTGGCAATTTCAGCCGAGAATAACCGTACCAGCCATATTCGAGCTGAACCAAAGCAATTGGCAGCCGACTTCATCGGTTACCGAAGTGTTGGTACGGTTGTACCGAACCGAATCCATGTAAATGGTACAGTAACGCTAGCTTCATCAGGAAAAGTGAAGAAGATGTTTGCTCACTGCTTAGATGGAAAGAATGGATACGGTATCTTTGCTATTGGGCGTGTTGTGCAGCCGAAAGTTAATATGACTCCATTGGTACCAAATCAGCCACACTACAGTGTCAATATGAAGGCAGTTCAAGTAGGCCGTGCTTTTCTAAATATTTCTACAGATGTATTTGAAGCGGGAGATAGAAAAGGGACTATAATTGACAGCGGTGCAACTTTGGCCTATCCTCCAGACGTTGTGTACGAGCCCTTAATCTTCCCTCAGCAGCCTGATTTGAAAATTCACACTCTTCATGGCGAGTATACACGCCTTGAGTACTCGGGAAGGTATTATCTCCGTGCCACTGATATTTCTAAACAAAAGTCGAACTACGAGCAGGACAAACCACCTCCCAAAAGGCCCAAACCAAACTCAACCCAAGTGAGAGAGAAAAGGGGAACTGAACAATCAAGGCCCAGTTCACCGGATTGCAGCCGCAGCCCGGAAAGGCAAGGGACCAAAGCCCACTATCGAAATTCTACGTCCCCATCACCCGCATTGACCAGGTTTGATTCTTCGGGAAGCAACCCCACCCATCACCACTCCGGCGGCCGACCCCGACTCTCCACCATCGGACAAAGCCGGAAGAGACCTCGCCTTGGGTCTAACACGGAAGACAACCACACCTGCTGCTCATCAAGTATCAAACTACGGGATGAACAGAGTGGAACAGTGCATTTAGCAGGTTCCCACTACATCTCTTCTTCTCGCTTGCCATTTGAATCACCAATGGACTATAAACTTCTTCCTTATGCTGCTGCTGTACGGTTTACTTTACCGAAATGGAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

353

Amino Acids

39.31

Weight (kDa)

9.78

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05840
fragaria_vesca	FvH4_4g12250 FvH4_4g12250 FvH4_4g12250
malus_domestica	MD04G1028200.v1.1
prunus_persica	Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1
pyrus_communis	pycom04g02480 pycom13g29440 pycom13g29450
rosa_chinensis	RchiOBHm_Chr4g0410011 RchiOBHm_Chr4g0410051
rosa_laevigata	RLG00000008506
rosa_multiflora	Rmu_sc0000023.1_g000006 Rmu_sc0019088.1_g000003 Rmu_sc0026249.1_g000001 Rmu_ssc0000186.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354520 Rroxscaffold_5G00354580
rosa_rugosa	Rorug04G0100700 Rorug04G0100800
rosa_samantha	Rh4AG159000 Rh4BG158300 Rh4BG172300 Rh4CG170300 Rh4DG154100 Rh6BG295000
rosa_wichuraiana	Rw4G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	902
Acc36I	ACCTGC	2 cut(s)	902, 941
Acc65I	GGTACC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	530
AciI	CCGC	5 cut(s)	404, 435, 703, 762, 816
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	817
AcsI	RAATTY	2 cut(s)	507, 742
AfaI	GTAC	9 cut(s)	5, 91, 157, 165, 190, 318, 470, 545, 1032
AfiI	CCNNNNNNNGG	2 cut(s)	709, 866
AgsI	TTSAA	4 cut(s)	359, 401, 505, 989
AjnI	CCWGG	1 cut(s)	770
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	3 cut(s)	19, 107, 203
AluI	AGCT	3 cut(s)	19, 107, 203
Alw26I	GTCTC	1 cut(s)	850
AlwI	GGATC	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	5 cut(s)	364, 447, 626, 680, 817
ApeKI	GCWGC	8 cut(s)	125, 289, 493, 699, 705, 897, 1022, 1025
ApoI	RAATTY	2 cut(s)	507, 742
Asp718I	GGTACC	1 cut(s)	316
AspS9I	GGNCC	3 cut(s)	627, 681, 723
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	4 cut(s)	681, 750, 797, 984
AsuNHI	GCTAGC	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	723
BaeI	ACNNNNGTAYC	4 cut(s)	147, 147, 180, 180
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	477
BarI	GAAGNNNNNNTAC	2 cut(s)	139, 171
BbsI	GAAGAC	1 cut(s)	888
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	8 cut(s)	137, 301, 505, 711, 717, 884, 1009, 1012
BccI	CCATC	4 cut(s)	239, 763, 810, 845
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	772
BciVI	GTATCC	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	1 cut(s)	850
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	334, 387
BfuAI	ACCTGC	2 cut(s)	902, 941
BfuI	GTATCC	1 cut(s)	251
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	2 cut(s)	710, 772
Bme18I	GGWCC	1 cut(s)	723
BmeT110I	CYCGRG	1 cut(s)	547
BmgT120I	GGNCC	3 cut(s)	627, 681, 723
BmiI	GGNNCC	3 cut(s)	318, 724, 955
BmrFI	CCNGG	2 cut(s)	710, 772
BmrI	ACTGGG	1 cut(s)	678
BmtI	GCTAGC	1 cut(s)	203
BmuI	ACTGGG	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	888
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	560
BpuMI	CCSGG	1 cut(s)	710
BsaI	GGTCTC	1 cut(s)	850
BsaJI	CCNNGG	1 cut(s)	865
BsaWI	WCCGGW	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	2 cut(s)	709, 866
Bse1I	ACTGG	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	772
BseDI	CCNNGG	1 cut(s)	865
BseGI	GGATG	1 cut(s)	928
BseLI	CCNNNNNNNGG	2 cut(s)	709, 866
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	817
BseXI	GCAGC	8 cut(s)	137, 301, 505, 711, 717, 884, 1009, 1012
BsgI	GTGCAG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	820
BshFI	GGCC	5 cut(s)	366, 449, 628, 682, 819
BshNI	GGYRCC	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	820
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	4 cut(s)	692, 710, 813, 850
BslFI	GGGAC	3 cut(s)	433, 736, 736
BslI	CCNNNNNNNGG	2 cut(s)	709, 866
BsmAI	GTCTC	1 cut(s)	850
BsmFI	GGGAC	3 cut(s)	433, 736, 736
BsnI	GGCC	5 cut(s)	366, 449, 628, 682, 819
Bso31I	GGTCTC	1 cut(s)	850
BsoBI	CYCGRG	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	5 cut(s)	404, 435, 703, 762, 816
BspANI	GGCC	5 cut(s)	366, 449, 628, 682, 819
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	318, 724, 955
BspMI	ACCTGC	2 cut(s)	902, 941
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	850
BsrI	ACTGG	1 cut(s)	684
BssECI	CCNNGG	1 cut(s)	865
BssMI	GATC	1 cut(s)	13
BssNAI	GTATAC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	865
Bst1107I	GTATAC	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	7 cut(s)	89, 160, 193, 263, 338, 940, 1035
Bst6I	CTCTTC	3 cut(s)	522, 848, 973
BstC8I	GCNNGC	2 cut(s)	201, 980
BstDEI	CTNAG	2 cut(s)	241, 489
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	928
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	850
BstMBI	GATC	1 cut(s)	13
BstMCI	CGRYCG	1 cut(s)	820
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 286, 446, 705
BstNI	CCWGG	1 cut(s)	772
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	708, 770
BstSFI	CTRYAG	2 cut(s)	334, 387
BstV1I	GCAGC	8 cut(s)	137, 301, 505, 711, 717, 884, 1009, 1012
BstV2I	GAAGAC	1 cut(s)	888
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstZ17I	GTATAC	1 cut(s)	531
BstZI	CGGCCG	1 cut(s)	817
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	5 cut(s)	366, 449, 628, 682, 819
BtsCI	GGATG	1 cut(s)	928
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	4 cut(s)	235, 343, 570, 945
BveI	ACCTGC	2 cut(s)	902, 941
Cac8I	GCNNGC	2 cut(s)	201, 980
Cfr13I	GGNCC	3 cut(s)	627, 681, 723
CsiI	ACCWGGT	1 cut(s)	770
Csp6I	GTAC	9 cut(s)	4, 90, 156, 164, 189, 317, 469, 544, 1031
CviAII	CATG	2 cut(s)	179, 521
CviQI	GTAC	9 cut(s)	4, 90, 156, 164, 189, 317, 469, 544, 1031
DdeI	CTNAG	2 cut(s)	241, 489
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	817
EagI	CGGCCG	1 cut(s)	817
Eam1104I	CTCTTC	3 cut(s)	522, 848, 973
EarI	CTCTTC	3 cut(s)	522, 848, 973
EclXI	CGGCCG	1 cut(s)	817
Eco130I	CCWWGG	1 cut(s)	865
Eco24I	GRGCYC	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	850
Eco47I	GGWCC	1 cut(s)	723
Eco52I	CGGCCG	1 cut(s)	817
Eco88I	CYCGRG	1 cut(s)	547
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	770
EcoT14I	CCWWGG	1 cut(s)	865
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	865
FaeI	CATG	2 cut(s)	182, 524
FaiI	YATR	9 cut(s)	99, 180, 305, 347, 425, 522, 531, 1005, 1020
FaqI	GGGAC	3 cut(s)	433, 736, 736
FatI	CATG	2 cut(s)	178, 520
FauI	CCCGC	2 cut(s)	397, 769
FblI	GTMKAC	1 cut(s)	530
FokI	GGATG	1 cut(s)	935
FriOI	GRGCYC	1 cut(s)	477
FspBI	CTAG	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	5 cut(s)	366, 449, 628, 682, 819
HapII	CCGG	4 cut(s)	692, 710, 813, 850
Hin1II	CATG	2 cut(s)	182, 524
HinfI	GANTC	5 cut(s)	174, 307, 779, 828, 989
HpaII	CCGG	4 cut(s)	692, 710, 813, 850
HphI	GGTGA	4 cut(s)	681, 750, 797, 984
Hpy166II	GTNNAC	4 cut(s)	469, 531, 689, 1038
Hpy188I	TCNGA	1 cut(s)	842
Hpy188III	TCNNGA	5 cut(s)	25, 210, 458, 549, 786
Hpy8I	GTNNAC	4 cut(s)	469, 531, 689, 1038
HpyAV	CCTTC	3 cut(s)	54, 343, 546
HpyCH4III	ACNGT	7 cut(s)	89, 160, 193, 263, 338, 940, 1035
HpyCH4IV	ACGT	3 cut(s)	44, 462, 749
HpyCH4V	TGCA	4 cut(s)	289, 440, 699, 943
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 286, 446, 705
HpyF3I	CTNAG	2 cut(s)	241, 489
HpySE526I	ACGT	3 cut(s)	44, 462, 749
Hsp92II	CATG	2 cut(s)	182, 524
KpnI	GGTACC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	13
Lsp1109I	GCAGC	8 cut(s)	137, 301, 505, 711, 717, 884, 1009, 1012
MabI	ACCWGGT	1 cut(s)	770
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	3 cut(s)	44, 462, 749
MaeIII	GTNAC	2 cut(s)	140, 193
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MfeI	CAATTG	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	5 cut(s)	69, 119, 426, 507, 742
MlyI	GAGTC	2 cut(s)	301, 822
MnlI	CCTC	5 cut(s)	4, 465, 498, 627, 870
MseI	TTAA	2 cut(s)	300, 479
MslI	CAYNNNNRTG	2 cut(s)	183, 336
MspA1I	CMGCKG	1 cut(s)	435
MspI	CCGG	4 cut(s)	692, 710, 813, 850
MspR9I	CCNGG	2 cut(s)	710, 772
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	772
MwoI	GCNNNNNNNGC	4 cut(s)	74, 286, 446, 705
NciI	CCSGG	1 cut(s)	710
NdeII	GATC	1 cut(s)	13
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	182, 524
NlaIV	GGNNCC	3 cut(s)	318, 724, 955
NmeAIII	GCCGAG	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	336
PaqCI	CACCTGC	1 cut(s)	902
PcsI	WCGNNNNNNNCGW	2 cut(s)	164, 468
PfeI	GAWTC	3 cut(s)	174, 779, 989
PleI	GAGTC	2 cut(s)	301, 822
PpsI	GAGTC	2 cut(s)	301, 822
Psp6I	CCWGG	1 cut(s)	770
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	3 cut(s)	318, 724, 955
PspPI	GGNCC	3 cut(s)	627, 681, 723
RsaI	GTAC	9 cut(s)	5, 91, 157, 165, 190, 318, 470, 545, 1032
RsaNI	GTAC	9 cut(s)	4, 90, 156, 164, 189, 317, 469, 544, 1031
RseI	CAYNNNNRTG	2 cut(s)	183, 336
SaqAI	TTAA	2 cut(s)	300, 479
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	3 cut(s)	627, 681, 723
ScaI	AGTACT	1 cut(s)	545
SchI	GAGTC	2 cut(s)	301, 822
ScrFI	CCNGG	2 cut(s)	710, 772
SduI	GDGCHC	1 cut(s)	477
SexAI	ACCWGGT	1 cut(s)	770
SfcI	CTRYAG	2 cut(s)	334, 387
SinI	GGWCC	1 cut(s)	723
SmiMI	CAYNNNNRTG	2 cut(s)	183, 336
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	5 cut(s)	69, 119, 426, 507, 742
SsiI	CCGC	5 cut(s)	404, 435, 703, 762, 816
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	708, 770
StyI	CCWWGG	1 cut(s)	865
TaaI	ACNGT	7 cut(s)	89, 160, 193, 263, 338, 940, 1035
TaiI	ACGT	3 cut(s)	47, 465, 752
TaqI	TCGA	4 cut(s)	26, 103, 593, 739
TasI	AATT	5 cut(s)	69, 119, 426, 507, 742
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	2 cut(s)	705, 819
TfiI	GAWTC	3 cut(s)	174, 779, 989
Tru1I	TTAA	2 cut(s)	300, 479
Tru9I	TTAA	2 cut(s)	300, 479
TscAI	CASTG	4 cut(s)	242, 343, 577, 945
TseI	GCWGC	8 cut(s)	125, 289, 493, 699, 705, 897, 1022, 1025
TspDTI	ATGAA	5 cut(s)	124, 195, 362, 509, 939
TspGWI	ACGGA	2 cut(s)	554, 893
TspRI	CASTG	4 cut(s)	242, 343, 577, 945
VpaK11BI	GGWCC	1 cut(s)	723
XapI	RAATTY	2 cut(s)	507, 742
XmiI	GTMKAC	1 cut(s)	530
XspI	CTAG	1 cut(s)	200
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.