Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005214

Physical Location & Seq

Genomic Coordinates Forward (+)

26274484 .. 26278078

Gene Structure 3595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g29450.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTTGCTCATTGCTTAGATGGAAAGAATGGAGGTGGTATCTTTGCTATTGGGCGTGTTGTACAACCAAAAGTTAACATGACTCCCTTGGTACCAAATCAGCCGCACTACAATGTCAACATGAAATCCGTTCAAGTTGGCCGTTCTTTTCTAAATCTTCCACCAGATTTATTTGAAGCGGGAGATAGAAAAGGCACAATAATTGACAGTGGCACAACATTGGCTTATCTTCCCGATGTGATTTATCAGCCCTTAGTAAGTAAGATTATCGCTCAGCAGAATGATTTGAATGTTCAAACTGTTCACGGAGAATATACATGCTTTCAGTATCCAGGAAGTGTTGATGATGGATTTCCTTCGGTCACCTTTTATTTTGAAAATTCACTTTCTCTGAAGGTTTATCCACATGACTATTTGTTCCCTTATGAAGGCTTTTGGTGTATTGGTTGGCAAAACAGTGGGATGCAATCAAGGGATAGGAAGAACTTGACTCTTTTGGGAGATTTGGTACTGTCGAACAAGCTAGTCCTGTATGATCTTGAGAATCAGGTCATTGGATGGACTGAATATAACTGCTCGTCGAGTATTAAAGTACAGGATGAACAGAATGGAACAGTGCACTTAGTAGGTTCCCACTATATTTCTCCTTCTTCTGCCTCCTATTTGAATACCCGATGGGCTATAATCTTCTTGTTGATAACCATGCTGCTGCACGGTCTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

242

Amino Acids

27.0

Weight (kDa)

5.74

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05840
fragaria_vesca	FvH4_4g12250 FvH4_4g12250 FvH4_4g12250
malus_domestica	MD04G1028200.v1.1
prunus_persica	Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1
pyrus_communis	pycom04g02480 pycom13g29440 pycom13g29450
rosa_chinensis	RchiOBHm_Chr4g0410011 RchiOBHm_Chr4g0410051
rosa_laevigata	RLG00000008506
rosa_multiflora	Rmu_sc0000023.1_g000006 Rmu_sc0019088.1_g000003 Rmu_sc0026249.1_g000001 Rmu_ssc0000186.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354520 Rroxscaffold_5G00354580
rosa_rugosa	Rorug04G0100700 Rorug04G0100800
rosa_samantha	Rh4AG159000 Rh4BG158300 Rh4BG172300 Rh4CG170300 Rh4DG154100 Rh6BG295000
rosa_wichuraiana	Rw4G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	91
AciI	CCGC	2 cut(s)	104, 179
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	4 cut(s)	63, 93, 510, 594
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	6 cut(s)	134, 176, 289, 296, 377, 667
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	1 cut(s)	523
AluI	AGCT	1 cut(s)	523
Alw21I	GWGCWC	1 cut(s)	621
Alw44I	GTGCAC	1 cut(s)	617
AoxI	GGCC	1 cut(s)	139
ApaLI	GTGCAC	1 cut(s)	617
ApeKI	GCWGC	2 cut(s)	706, 709
ApoI	RAATTY	1 cut(s)	379
Asp718I	GGTACC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	621
BanI	GGYRCC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	693, 696
BccI	CCATC	4 cut(s)	14, 341, 552, 669
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	333
BciVI	GTATCC	1 cut(s)	339
BfaI	CTAG	2 cut(s)	524, 719
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	3 cut(s)	104, 707, 710
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	3 cut(s)	105, 708, 711
Bme1390I	CCNGG	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	93, 631
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	468, 563, 604
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	621
BseXI	GCAGC	2 cut(s)	693, 696
BsgI	GTGCAG	1 cut(s)	695
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	428
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp1407I	TGTACA	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	535
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	2 cut(s)	104, 179
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	93, 631
BspT107I	GGYRCC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	6 cut(s)	209, 301, 458, 513, 616, 716
BstAUI	TGTACA	1 cut(s)	61
BstDEI	CTNAG	4 cut(s)	16, 253, 273, 622
BstEII	GGTNACC	1 cut(s)	361
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	468, 563, 604
BstKTI	GATC	1 cut(s)	538
BstMBI	GATC	1 cut(s)	535
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	693, 696
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	468, 563, 604
BtsIMutI	CAGTG	3 cut(s)	214, 463, 621
Csp6I	GTAC	4 cut(s)	62, 92, 509, 593
CviAII	CATG	5 cut(s)	79, 121, 318, 407, 703
CviJI	RGCY	7 cut(s)	103, 141, 224, 250, 432, 523, 680
CviKI_1	RGCY	7 cut(s)	103, 141, 224, 250, 432, 523, 680
CviQI	GTAC	4 cut(s)	62, 92, 509, 593
DdeI	CTNAG	4 cut(s)	16, 253, 273, 622
DpnI	GATC	1 cut(s)	537
DpnII	GATC	1 cut(s)	535
EaeI	YGGCCR	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	413
Eco91I	GGTNACC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoO65I	GGTNACC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	82, 124, 321, 410, 706
FatI	CATG	5 cut(s)	78, 120, 317, 406, 702
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	104, 707, 710
FokI	GGATG	3 cut(s)	475, 570, 611
Fsp4HI	GCNGC	3 cut(s)	104, 707, 710
FspBI	CTAG	2 cut(s)	524, 719
GluI	GCNGC	3 cut(s)	104, 707, 710
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	82, 124, 321, 410, 706
HincII	GTYRAC	2 cut(s)	76, 118
HindII	GTYRAC	2 cut(s)	76, 118
HinfI	GANTC	3 cut(s)	82, 490, 544
HpaI	GTTAAC	1 cut(s)	76
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	4 cut(s)	76, 118, 304, 619
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	2 cut(s)	233, 539
Hpy8I	GTNNAC	4 cut(s)	76, 118, 304, 619
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	4 cut(s)	366, 388, 422, 657
HpyCH4III	ACNGT	6 cut(s)	209, 301, 458, 513, 616, 716
HpyCH4V	TGCA	3 cut(s)	466, 619, 712
HpyF3I	CTNAG	4 cut(s)	16, 253, 273, 622
Hsp92II	CATG	5 cut(s)	82, 124, 321, 410, 706
KpnI	GGTACC	1 cut(s)	95
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	535
LpnPI	CCDG	6 cut(s)	177, 318, 345, 533, 542, 581
Lsp1109I	GCAGC	2 cut(s)	693, 696
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	2 cut(s)	524, 719
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	537
MboI	GATC	1 cut(s)	535
MboII	GAAGA	5 cut(s)	149, 221, 493, 642, 679
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	2 cut(s)	201, 379
MlyI	GAGTC	2 cut(s)	76, 484
MnlI	CCTC	2 cut(s)	26, 667
MseI	TTAA	2 cut(s)	75, 588
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	535
NlaIII	CATG	5 cut(s)	82, 124, 321, 410, 706
NlaIV	GGNNCC	2 cut(s)	93, 631
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	105, 708, 711
PleI	GAGTC	2 cut(s)	76, 484
PpsI	GAGTC	2 cut(s)	76, 484
Psp6I	CCWGG	1 cut(s)	331
PspEI	GGTNACC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	93, 631
RsaI	GTAC	4 cut(s)	63, 93, 510, 594
RsaNI	GTAC	4 cut(s)	62, 92, 509, 593
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	75, 588
SatI	GCNGC	3 cut(s)	104, 707, 710
Sau3AI	GATC	1 cut(s)	535
SchI	GAGTC	2 cut(s)	76, 484
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	621
SetI	ASST	6 cut(s)	37, 368, 399, 525, 552, 631
SfaNI	GCATC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	2 cut(s)	201, 379
SsiI	CCGC	2 cut(s)	104, 179
SspMI	CTAG	2 cut(s)	524, 719
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	6 cut(s)	209, 301, 458, 513, 616, 716
TaqI	TCGA	2 cut(s)	515, 581
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	2 cut(s)	201, 379
TatI	WGTACW	2 cut(s)	61, 592
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	2 cut(s)	75, 588
Tru9I	TTAA	2 cut(s)	75, 588
TscAI	CASTG	3 cut(s)	214, 463, 621
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	706, 709
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	137, 441, 615
TspGWI	ACGGA	2 cut(s)	118, 321
TspRI	CASTG	3 cut(s)	214, 463, 621
VneI	GTGCAC	1 cut(s)	617
XagI	CCTNNNNNAGG	1 cut(s)	426
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	321
XspI	CTAG	2 cut(s)	524, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.