Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000186.1

Orthogroup ID

OG0005214

Physical Location & Seq

Genomic Coordinates Forward (+)

60787 .. 62157

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000186.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgtcgtcttccgccatgaaaacaggcatgctcactctcacaacctcatgttggagctttcttcttctcttactcctcctgatttccaccaacatcatcaccggcgtcgctctcgacaatgccgtcttgagcgtcaagtacaaatactccagccgcgaccccactctcagcgccctaaaagctcacgacaccaaacgtactcttcaatttctcaccggcgtagatctccgtctcggtggctccggcctccctgacgttgtcgggggcatcaaaattcaacttctcgtcatgctctataagccggtgttgaagaaattcacggtaatgggaggtggtggtgacaacttggagaagagaggagtcgttggtagtgatttgggttcgccggaagcgctagaagagagagaagttaagacacccagaaaggttgggtgtccaaagttgttctgggtattgcttcatcggcgcatgagtcattttccggcggctccggaagatgtgggagctgggtttgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

172

Amino Acids

18.6

Weight (kDa)

9.45

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05840
fragaria_vesca	FvH4_4g12250 FvH4_4g12250 FvH4_4g12250
malus_domestica	MD04G1028200.v1.1
prunus_persica	Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1
pyrus_communis	pycom04g02480 pycom13g29440 pycom13g29450
rosa_chinensis	RchiOBHm_Chr4g0410011 RchiOBHm_Chr4g0410051
rosa_laevigata	RLG00000008506
rosa_multiflora	Rmu_sc0000023.1_g000006 Rmu_sc0019088.1_g000003 Rmu_sc0026249.1_g000001 Rmu_ssc0000186.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354520 Rroxscaffold_5G00354580
rosa_rugosa	Rorug04G0100700 Rorug04G0100800
rosa_samantha	Rh4AG159000 Rh4BG158300 Rh4BG172300 Rh4CG170300 Rh4DG154100 Rh6BG295000
rosa_wichuraiana	Rw4G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccII	CGCG	1 cut(s)	156
AccIII	TCCGGA	1 cut(s)	490
AciI	CCGC	3 cut(s)	12, 154, 485
AcsI	RAATTY	2 cut(s)	273, 314
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	140, 199
AfeI	AGCGCT	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	206, 278, 310
AluBI	AGCT	3 cut(s)	57, 182, 506
AluI	AGCT	3 cut(s)	57, 182, 506
Alw26I	GTCTC	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	490
Aor51HI	AGCGCT	1 cut(s)	393
AoxI	GGCC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	273, 314
Asp700I	GAANNNNTTC	1 cut(s)	314
AspLEI	GCGC	3 cut(s)	173, 394, 468
AsuHPI	GGTGA	3 cut(s)	91, 205, 350
BceAI	ACGGC	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	395
BfoI	RGCGCY	2 cut(s)	174, 395
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	2 cut(s)	154, 486
BlsI	GCNGC	2 cut(s)	155, 487
BmiI	GGNNCC	2 cut(s)	241, 489
BmsI	GCATC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	3 cut(s)	101, 215, 301
BseAI	TCCGGA	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	65, 372
BseYI	CCCAGC	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	246
BsiSI	CCGG	7 cut(s)	102, 216, 243, 302, 386, 482, 491
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	490
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	3 cut(s)	12, 154, 485
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	241, 489
BsrFI	RCCGGY	3 cut(s)	101, 215, 301
BssAI	RCCGGY	3 cut(s)	101, 215, 301
BssMI	GATC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	3 cut(s)	207, 347, 393
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	2 cut(s)	174, 395
BstHHI	GCGC	3 cut(s)	173, 394, 468
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 298, 391, 463
BstNSI	RCATGY	1 cut(s)	31
BstUI	CGCG	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	3 cut(s)	173, 394, 468
Cfr10I	RCCGGY	3 cut(s)	101, 215, 301
CseI	GACGC	2 cut(s)	94, 121
Csp6I	GTAC	2 cut(s)	139, 198
CviAII	CATG	5 cut(s)	16, 28, 48, 289, 469
CviJI	RGCY	8 cut(s)	57, 153, 182, 240, 246, 301, 488, 506
CviKI_1	RGCY	8 cut(s)	57, 153, 182, 240, 246, 301, 488, 506
CviQI	GTAC	2 cut(s)	139, 198
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	3 cut(s)	207, 347, 393
EarI	CTCTTC	3 cut(s)	207, 347, 393
Eco47III	AGCGCT	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	5 cut(s)	19, 31, 51, 292, 472
FaiI	YATR	6 cut(s)	17, 29, 49, 290, 297, 470
FatI	CATG	5 cut(s)	15, 27, 47, 288, 468
Fnu4HI	GCNGC	2 cut(s)	154, 486
Fsp4HI	GCNGC	2 cut(s)	154, 486
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	3 cut(s)	172, 393, 467
GluI	GCNGC	2 cut(s)	154, 486
GsaI	CCCAGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	133
HaeII	RGCGCY	2 cut(s)	174, 395
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	7 cut(s)	102, 216, 243, 302, 386, 482, 491
HgaI	GACGC	2 cut(s)	94, 121
HhaI	GCGC	3 cut(s)	173, 394, 468
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	5 cut(s)	19, 31, 51, 292, 472
Hin6I	GCGC	3 cut(s)	171, 392, 466
HinP1I	GCGC	3 cut(s)	171, 392, 466
HinfI	GANTC	2 cut(s)	360, 472
HpaII	CCGG	7 cut(s)	102, 216, 243, 302, 386, 482, 491
HphI	GGTGA	3 cut(s)	91, 205, 350
Hpy188III	TCNNGA	5 cut(s)	79, 113, 127, 185, 491
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	196, 255
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 298, 391, 463
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	196, 255
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	5 cut(s)	19, 31, 51, 292, 472
HspAI	GCGC	3 cut(s)	171, 392, 466
Kpn2I	TCCGGA	1 cut(s)	490
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	4 cut(s)	54, 245, 493, 503
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	2 cut(s)	196, 255
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	7 cut(s)	53, 56, 194, 322, 364, 410, 506
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	3 cut(s)	206, 273, 314
MlyI	GAGTC	2 cut(s)	369, 481
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	5 cut(s)	55, 86, 257, 323, 350
MroI	TCCGGA	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	7 cut(s)	102, 216, 243, 302, 386, 482, 491
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	4 cut(s)	179, 298, 391, 463
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	5 cut(s)	19, 31, 51, 292, 472
NlaIV	GGNNCC	2 cut(s)	241, 489
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	314
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	155, 487
PleI	GAGTC	2 cut(s)	368, 480
PpsI	GAGTC	2 cut(s)	368, 480
PspFI	CCCAGC	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	241, 489
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	2 cut(s)	140, 199
RsaNI	GTAC	2 cut(s)	139, 198
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	154, 486
Sau3AI	GATC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	369, 481
SetI	ASST	8 cut(s)	47, 59, 184, 199, 258, 334, 429, 508
SfaNI	GCATC	1 cut(s)	276
SgrAI	CRCCGGYG	2 cut(s)	101, 215
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	3 cut(s)	206, 273, 314
SsiI	CCGC	3 cut(s)	12, 154, 485
SspMI	CTAG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	199, 258
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	206, 273, 314
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	2 cut(s)	156, 488
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	32, 449
TspGWI	ACGGA	1 cut(s)	218
Tth111I	GACNNNGTC	1 cut(s)	257
XapI	RAATTY	2 cut(s)	273, 314
XceI	RCATGY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.