Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019088.1

Orthogroup ID

OG0005214

Physical Location & Seq

Genomic Coordinates Forward (+)

3426 .. 4298

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019088.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgaaaacagacacgctcactctcacaacctcatgccggagctttcttcttctcttactcctcctgatttccaccaacatcatcgccagcgtcactctcgacaacgccgtcttgagcgtcaagtacaaatacgccagccgtgaccccactctcagggccctaaaagctcacgacaccaaacgcactcttcgatttctcaccagagtggatctccctctcggtggctccgacctccctgacgccgtcaggggcatcaaaattcaacttctcgtcatgctttacaagcatgtgttgaagaaattcacagcaatggaaggtggtggtgacaacttggagaagagaggagtcgttggtggtgatttgggttcgccggaagtgctagaagagagagaagtcaaggcacccagaaaggttgggtgtctaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

142

Amino Acids

15.62

Weight (kDa)

9.69

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05840
fragaria_vesca	FvH4_4g12250 FvH4_4g12250 FvH4_4g12250
malus_domestica	MD04G1028200.v1.1
prunus_persica	Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1
pyrus_communis	pycom04g02480 pycom13g29440 pycom13g29450
rosa_chinensis	RchiOBHm_Chr4g0410011 RchiOBHm_Chr4g0410051
rosa_laevigata	RLG00000008506
rosa_multiflora	Rmu_sc0000023.1_g000006 Rmu_sc0019088.1_g000003 Rmu_sc0026249.1_g000001 Rmu_ssc0000186.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354520 Rroxscaffold_5G00354580
rosa_rugosa	Rorug04G0100700 Rorug04G0100800
rosa_samantha	Rh4AG159000 Rh4BG158300 Rh4BG172300 Rh4CG170300 Rh4DG154100 Rh6BG295000
rosa_wichuraiana	Rw4G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	400
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	2 cut(s)	258, 299
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	36, 153, 221
AgsI	TTSAA	2 cut(s)	263, 295
AleI	CACNNNNGTG	1 cut(s)	203
AluBI	AGCT	2 cut(s)	42, 167
AluI	AGCT	2 cut(s)	42, 167
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	156
ApaI	GGGCCC	1 cut(s)	160
ApoI	RAATTY	2 cut(s)	258, 299
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	156, 157
AsuHPI	GGTGA	3 cut(s)	190, 335, 368
BaeGI	GKGCMC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	160
BceAI	ACGGC	3 cut(s)	92, 123, 227
BfaI	CTAG	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	156, 157
BmiI	GGNNCC	3 cut(s)	158, 226, 402
BmsI	GCATC	1 cut(s)	261
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpuEI	CTTGAG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 153, 221
Bse3DI	GCAATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	3 cut(s)	36, 153, 221
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	166
BseRI	GAGGAG	2 cut(s)	50, 357
BseSI	GKGCMC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	37, 371
BslI	CCNNNNNNNGG	3 cut(s)	36, 153, 221
BsnI	GGCC	1 cut(s)	158
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	158, 226, 402
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	315
BssMI	GATC	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	240
Bst6I	CTCTTC	3 cut(s)	192, 332, 378
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	88, 136
BstDEI	CTNAG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 283, 376
BstNSI	RCATGY	1 cut(s)	290
BstSLI	GKGCMC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	88, 136
Cfr13I	GGNCC	2 cut(s)	156, 157
CseI	GACGC	3 cut(s)	79, 106, 248
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	3 cut(s)	33, 274, 287
CviJI	RGCY	5 cut(s)	42, 138, 158, 167, 225
CviKI_1	RGCY	5 cut(s)	42, 138, 158, 167, 225
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	3 cut(s)	192, 332, 378
EarI	CTCTTC	3 cut(s)	192, 332, 378
Eco24I	GRGCYC	1 cut(s)	160
EcoO109I	RGGNCCY	2 cut(s)	156, 157
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	3 cut(s)	36, 277, 290
FaiI	YATR	3 cut(s)	34, 275, 288
FatI	CATG	3 cut(s)	32, 273, 286
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	2 cut(s)	37, 371
HgaI	GACGC	3 cut(s)	79, 106, 248
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	3 cut(s)	36, 277, 290
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	2 cut(s)	37, 371
HphI	GGTGA	3 cut(s)	190, 335, 368
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	4 cut(s)	64, 98, 112, 170
HpyAV	CCTTC	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 283, 376
HpyF3I	CTNAG	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	36, 277, 290
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	39, 230
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	3 cut(s)	91, 140, 323
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	6 cut(s)	38, 41, 179, 307, 349, 395
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	2 cut(s)	258, 299
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	40, 71, 225, 242, 335
MroXI	GAANNNNTTC	1 cut(s)	299
MslI	CAYNNNNRTG	2 cut(s)	203, 308
MspI	CCGG	2 cut(s)	37, 371
MwoI	GCNNNNNNNGC	3 cut(s)	164, 283, 376
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	36, 277, 290
NlaIV	GGNNCC	3 cut(s)	158, 226, 402
NmuCI	GTSAC	3 cut(s)	91, 140, 323
NspI	RCATGY	1 cut(s)	290
OliI	CACNNNNGTG	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 187, 225
PdmI	GAANNNNTTC	1 cut(s)	299
PflFI	GACNNNGTC	1 cut(s)	242
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	158, 226, 402
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	156, 157
PsuI	RGATCY	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	2 cut(s)	203, 308
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	156, 157
SchI	GAGTC	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	6 cut(s)	32, 44, 169, 234, 319, 414
SfaNI	GCATC	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	203, 308
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	2 cut(s)	258, 299
SspMI	CTAG	1 cut(s)	380
TaqI	TCGA	2 cut(s)	99, 190
TasI	AATT	2 cut(s)	258, 299
TatI	WGTACW	1 cut(s)	123
TseFI	GTSAC	3 cut(s)	91, 140, 323
Tsp45I	GTSAC	3 cut(s)	91, 140, 323
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	258, 299
XceI	RCATGY	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.