Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005214

Physical Location & Seq

Genomic Coordinates Reverse (-)

15724965 .. 15729652

Gene Structure 4688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0100700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGGCGCCAGGTCCTATTGAGTCGGCATTGCCGGAATCATCGTCGTCGTCGTCGTCGTCTTCCGGCGCTAACTCTGTTGTTGAGAGATCTGTGGTTGAGGATCTTCGTTTCAAGGAGCTGAGAGGTGTGCAATGGCGCTTAAATCTTGGGATTTTGCCTCTTTCTTCTTCCATTGATGATCTTCGCCGCGTCACAGCGGATTGTCGACGAAGATATGCTAGAATGAGAAGACGCCTTCTAGTTGATCCACCTAAGGATGGGAGTAGTTCTCCTGATCTTGCCATGGACAATCCTCTGTCCCAGAACCCAGAAAGCACCTGGGGTCGCTTCTTTCGGAATGCTGAGCTGGAGAAAATGGTTGACCAGGATTTATCACGTTTGTACCCAGAACATGGAAGCTACTTCCAAACACCAGGATGTCAAGGCATGCTGAGAAGAATCTTGTTATTGTGGTGTCTCAGACATCCAGAGTGTGGTTACAGACAAGGAATGCATGAACTCTTGGCTCCTCTTCTATATGTTCTTCATGTTGACGTGGAGGGTCTATCTCAAGTGCGAAAGCTATATGAAGATCACTTCACTGATAAATTTGATGATCTATCTTATCATGAAAATGATTCGACTTACAATTTTGATTTAAAAAACCTTCCTGATTCCATGGAAGATGAGGATAGCTTGCAGGGAGATGCATCAAAAGTTAAGAGTCTGGATGAGCTTGATCCCAAGATACAGACCATTGTAATGCTCAGTGATGCTTATGGTGCTGAAGGTGAATTGGGTATTGTCTTATCCGAGAAATTTATGGAACACGATGCATACTGCATGTTTGATGCGTTAATGAGTGGGGTCAACGGTTCAGTTTCTATGGCAGAATTCTTCTCTCCCTCCCCTGCTGTTGGCTCTCAGACTAGCTTACCTCCTGTCATTGAAGCATCTGCTGCATTGTATCATTTGCTGTCTCTTGTTGATTCATCTCTACACAGCCACCTTGTTGAGCTTGGTGTTGAACCCCAGTATTTTGCACTCCGCTGGTTAAGGGTTTTATTTGGACGTGAATTTTCACTTGCAAATCTATTGATAATTTGGGATGAGATATTTCTGTCTGATAATCGTAAATTAGACAAAGGTGGTGAAGATGATGCAGGATCCAGCTTTAGCATCCTTAGTTCACCTCGAGGAGCATTTATTTCAGCCCTGGCAGTTTCCATGTTACTTCATTTGAGATCTTCCCTTCTTGCCACAGAGAATGCAACTGCATGTCTTCAACGGTTACTAAACTTTCCTGAGAATATTGATTTAAAGAAACTGATACAGAAGGCAACATCATTGCAGGCTCTTGCTTTGGAGAACAATAGCTCATCCTCATTTCCTTCATATATGGGGCCATATGAGCACAGTAAATCAAAGGCTGTGAGAAGTCATAGTCTTTCAATCGACTCCGTTTCTCCAAAAACTCCATTAAGTTTGGTAAATGAAAGCTACTGGGAAGAGAAGTGGAGAGTTCTGCACAGGGAAGAAGAACTTAGGCAAGATATTTTGAAACAACAGGTTCCCAGCCAGAAGAAGCGATGGACTGAAAAAGTAAAATTGAGCCTATCTAGATCAGAATCTGCCCCATCTCCAGCAAAATGTGAGAGTGGCAAAAAGACCCCTAGGTTTGCTGTTAGACGAAAGTTGCTGGAAGACCTCTCGAGAGTGCTCAGCTCAGAGGAAGATATTGAGAAATTAGGCACTCACAAAGACAAAGGCTCTTCAGAAGTTGTGGTTAACAAAGAAGATGGTGTCAGTAAGGATCTTACTTCTGCAAATGAAGACAGATGTTTGAATGGAAGTCCAGCTAGTGAAGAGAACTCATTTGTTGGCTCATATCCAGCAAGTCCTCTGAGTGGGGCAAATGATGAACCTGAATCAGAGAAAAGTAGTGTTGGATCAAACTTATCCATTGATGAAAATAATGATAATCCAAATGATGATAATCCACAGTGTGTATCAGAAGGCCCACCTCGTCCGGTTTCTGATCCAGCTGAGGGTGTCTCTCAAGCATCCGAGTGCAGCAATCATTCAACGGGGAATTCAGTGACAGGAAAGGAACGAAAGCTTCTTTCTGGTAAATTCCAGAGGTTTTGGAAGTTGGGATGGAGTGCAGCTGGTGAAGGCACGTCCGAGAAAGGGGGCAACGCCCTTGACGCTACAAAATCTATCAGGAGTGATGTTGGTCAGAATGCAGCAAGCTCTTCTATGGCTGAAGGGTTCAATTCTGTAGTTAGCTGCAAAGGGGAAACTGTGGACCAGAATAGGACGGGTACTTTGAGGAATCTTGGGCATTCTATGCTTGATCATATACAGGTAATCGAGTCTGCTTTCCAGCAAGATCGAGGTGTTCAAGTGGGATCAGTCGAGAACTGTTCAAAAAATACTTTAGTTGGCAAAGGACAAGTAACGGCCATTGCAGCTCTCAAGGAGCTTCGGAAGATCAGCAATCTTTTGTCAGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

832

Amino Acids

91.64

Weight (kDa)

5.29

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	117 - 175	1.5e-12	Rab-GTPase-TBC domain
RabGAP-TBC	PF00566	267 - 369	1.4e-11	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05840
fragaria_vesca	FvH4_4g12250 FvH4_4g12250 FvH4_4g12250
malus_domestica	MD04G1028200.v1.1
prunus_persica	Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1
pyrus_communis	pycom04g02480 pycom13g29440 pycom13g29450
rosa_chinensis	RchiOBHm_Chr4g0410011 RchiOBHm_Chr4g0410051
rosa_laevigata	RLG00000008506
rosa_multiflora	Rmu_sc0000023.1_g000006 Rmu_sc0019088.1_g000003 Rmu_sc0026249.1_g000001 Rmu_ssc0000186.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354520 Rroxscaffold_5G00354580
rosa_rugosa	Rorug04G0100700 Rorug04G0100800
rosa_samantha	Rh4AG159000 Rh4BG158300 Rh4BG172300 Rh4CG170300 Rh4DG154100 Rh6BG295000
rosa_wichuraiana	Rw4G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1173
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	392, 473
AccI	GTMKAC	1 cut(s)	205
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	187, 197, 1027
AclWI	GGATC	9 cut(s)	108, 239, 713, 1140, 1153, 1800, 1936, 2012, 2398
AcoI	YGGCCR	1 cut(s)	2442
AcsI	RAATTY	6 cut(s)	587, 797, 872, 1055, 2071, 2111
AcuI	CTGAAG	3 cut(s)	786, 1737, 2265
AcyI	GRCGYC	2 cut(s)	5, 232
AdeI	CACNNNGTG	1 cut(s)	1985
AfaI	GTAC	2 cut(s)	383, 2305
AfiI	CCNNNNNNNGG	7 cut(s)	257, 392, 473, 896, 1886, 2027, 2169
AjiI	CACGTC	3 cut(s)	535, 1052, 2160
AjnI	CCWGG	5 cut(s)	7, 317, 363, 412, 1194
Alw21I	GWGCWC	2 cut(s)	1395, 1701
Alw26I	GTCTC	3 cut(s)	461, 963, 2038
AlwI	GGATC	9 cut(s)	108, 239, 713, 1140, 1153, 1800, 1936, 2012, 2398
AlwNI	CAGNNNCTG	1 cut(s)	1610
Ama87I	CYCGRG	2 cut(s)	1173, 1690
AoxI	GGCC	3 cut(s)	1382, 1996, 2442
ApeKI	GCWGC	6 cut(s)	938, 2052, 2144, 2225, 2268, 2450
ApoI	RAATTY	6 cut(s)	587, 797, 872, 1055, 2071, 2111
ArsI	GACNNNNNNTTYG	2 cut(s)	2290, 2322
AspA2I	CCTAGG	1 cut(s)	1652
AspLEI	GCGC	3 cut(s)	7, 68, 138
AspS9I	GGNCC	4 cut(s)	11, 1382, 1997, 2287
AsuHPI	GGTGA	4 cut(s)	782, 1142, 1161, 2162
AvaI	CYCGRG	2 cut(s)	1173, 1690
AvaII	GGWCC	2 cut(s)	11, 2287
AvrII	CCTAGG	1 cut(s)	1652
AxyI	CCTNAGG	1 cut(s)	252
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BamHI	GGATCC	1 cut(s)	1145
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	5 cut(s)	51, 235, 1253, 1689, 1818
Bbv12I	GWGCWC	2 cut(s)	1395, 1701
BbvCI	CCTCAGC	1 cut(s)	2025
BbvI	GCAGC	6 cut(s)	925, 2064, 2156, 2237, 2255, 2462
BccI	CCATC	5 cut(s)	251, 1563, 1624, 1772, 2130
BceAI	ACGGC	1 cut(s)	2457
BciT130I	CCWGG	5 cut(s)	9, 319, 365, 414, 1196
BclI	TGATCA	1 cut(s)	2335
BcoDI	GTCTC	3 cut(s)	461, 963, 2038
BfaI	CTAG	6 cut(s)	219, 239, 909, 1599, 1653, 1839
BfmI	CTRYAG	1 cut(s)	2259
BfoI	RGCGCY	3 cut(s)	8, 69, 139
BglII	AGATCT	2 cut(s)	86, 1223
BisI	GCNGC	7 cut(s)	187, 939, 2053, 2145, 2226, 2269, 2451
BlnI	CCTAGG	1 cut(s)	1652
BlpI	GCTNAGC	2 cut(s)	342, 1700
BlsI	GCNGC	7 cut(s)	188, 940, 2054, 2146, 2227, 2270, 2452
Bme1390I	CCNGG	5 cut(s)	9, 319, 365, 414, 1196
Bme18I	GGWCC	2 cut(s)	11, 2287
BmeT110I	CYCGRG	2 cut(s)	1173, 1690
BmgBI	CACGTC	3 cut(s)	535, 1052, 2160
BmgT120I	GGNCC	4 cut(s)	11, 1382, 1997, 2287
BmiI	GGNNCC	5 cut(s)	6, 507, 1147, 1383, 1551
BmrFI	CCNGG	5 cut(s)	9, 319, 365, 414, 1196
BmrI	ACTGGG	2 cut(s)	1006, 1492
BmsI	GCATC	9 cut(s)	676, 698, 742, 802, 820, 941, 1129, 1167, 2051
BmuI	ACTGGG	2 cut(s)	1006, 1492
BpiI	GAAGAC	5 cut(s)	51, 235, 1253, 1689, 1818
BplI	GAGNNNNNCTC	4 cut(s)	253, 285, 2018, 2050
BpmI	CTGGAG	2 cut(s)	368, 1605
Bpu10I	CCTNAGC	1 cut(s)	2025
Bpu1102I	GCTNAGC	2 cut(s)	342, 1700
BpuEI	CTTGAG	3 cut(s)	534, 2022, 2441
BsaBI	GATNNNNATC	2 cut(s)	1606, 1974
BsaHI	GRCGYC	2 cut(s)	5, 232
BsaJI	CCNNGG	5 cut(s)	282, 318, 657, 1194, 1652
BsaWI	WCCGGW	1 cut(s)	2008
Bsc4I	CCNNNNNNNGG	7 cut(s)	257, 392, 473, 896, 1886, 2027, 2169
Bse1I	ACTGG	2 cut(s)	1012, 1487
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	4 cut(s)	26, 137, 1325, 2445
Bse8I	GATNNNNATC	2 cut(s)	1606, 1974
BseBI	CCWGG	5 cut(s)	9, 319, 365, 414, 1196
BseDI	CCNNGG	5 cut(s)	282, 318, 657, 1194, 1652
BseGI	GGATG	9 cut(s)	262, 422, 463, 715, 1093, 1158, 1358, 2042, 2141
BseJI	GATNNNNATC	2 cut(s)	1606, 1974
BseLI	CCNNNNNNNGG	7 cut(s)	257, 392, 473, 896, 1886, 2027, 2169
BseMI	GCAATG	4 cut(s)	26, 137, 1325, 2445
BseNI	ACTGG	2 cut(s)	1012, 1487
BseRI	GAGGAG	2 cut(s)	498, 1191
BseXI	GCAGC	6 cut(s)	925, 2064, 2156, 2237, 2255, 2462
BseYI	CCCAGC	1 cut(s)	1553
BsgI	GTGCAG	3 cut(s)	1490, 2071, 2163
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	1384, 1998, 2444
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	1395, 1701
BsiHKCI	CYCGRG	2 cut(s)	1173, 1690
BsiSI	CCGG	3 cut(s)	32, 63, 2009
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	7 cut(s)	257, 392, 473, 896, 1886, 2027, 2169
BsmAI	GTCTC	3 cut(s)	461, 963, 2038
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	5 cut(s)	343, 495, 1252, 2227, 2323
BsnI	GGCC	3 cut(s)	1384, 1998, 2444
BsoBI	CYCGRG	2 cut(s)	1173, 1690
Bsp1286I	GDGCHC	2 cut(s)	1395, 1701
Bsp1720I	GCTNAGC	2 cut(s)	342, 1700
Bsp19I	CCATGG	2 cut(s)	282, 657
BspACI	CCGC	3 cut(s)	187, 197, 1027
BspANI	GGCC	3 cut(s)	1384, 1998, 2444
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	5 cut(s)	6, 507, 1147, 1383, 1551
BspPI	GGATC	9 cut(s)	108, 239, 713, 1140, 1153, 1800, 1936, 2012, 2398
BspQI	GCTCTTC	2 cut(s)	1756, 2239
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	4 cut(s)	26, 137, 1325, 2445
BsrI	ACTGG	2 cut(s)	1012, 1487
BssECI	CCNNGG	5 cut(s)	282, 318, 657, 1194, 1652
BssNI	GRCGYC	2 cut(s)	5, 232
BssT1I	CCWWGG	3 cut(s)	282, 657, 1652
Bst2UI	CCWGG	5 cut(s)	9, 319, 365, 414, 1196
Bst4CI	ACNGT	6 cut(s)	854, 1269, 1397, 1983, 2284, 2405
Bst6I	CTCTTC	5 cut(s)	516, 1482, 1756, 1839, 2239
BstACI	GRCGYC	2 cut(s)	5, 232
BstAPI	GCANNNNNTGC	2 cut(s)	938, 2329
BstC8I	GCNNGC	4 cut(s)	428, 677, 1332, 2230
BstDSI	CCRYGG	2 cut(s)	282, 657
BstF5I	GGATG	9 cut(s)	262, 422, 463, 715, 1093, 1158, 1358, 2042, 2141
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	3 cut(s)	8, 69, 139
BstHHI	GCGC	3 cut(s)	7, 68, 138
BstMAI	GTCTC	3 cut(s)	461, 963, 2038
BstMWI	GCNNNNNNNGC	6 cut(s)	761, 938, 1390, 2186, 2329, 2450
BstNI	CCWGG	5 cut(s)	9, 319, 365, 414, 1196
BstNSI	RCATGY	3 cut(s)	430, 826, 1260
BstSCI	CCNGG	5 cut(s)	7, 317, 363, 412, 1194
BstSFI	CTRYAG	1 cut(s)	2259
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	6 cut(s)	925, 2064, 2156, 2237, 2255, 2462
BstV2I	GAAGAC	5 cut(s)	51, 235, 1253, 1689, 1818
BstX2I	RGATCY	5 cut(s)	86, 100, 1145, 1223, 1792
BstYI	RGATCY	5 cut(s)	86, 100, 1145, 1223, 1792
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	1384, 1998, 2444
BtgI	CCRYGG	2 cut(s)	282, 657
BtgZI	GCGATG	1 cut(s)	1582
BtrI	CACGTC	3 cut(s)	535, 1052, 2160
BtsCI	GGATG	9 cut(s)	262, 422, 463, 715, 1093, 1158, 1358, 2042, 2141
BtsIMutI	CAGTG	4 cut(s)	579, 754, 1988, 2082
Cac8I	GCNNGC	4 cut(s)	428, 677, 1332, 2230
CaiI	CAGNNNCTG	1 cut(s)	1610
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	3 cut(s)	7, 68, 138
Cfr13I	GGNCC	4 cut(s)	11, 1382, 1997, 2287
CseI	GACGC	3 cut(s)	178, 240, 2195
Csp6I	GTAC	2 cut(s)	382, 2304
CviQI	GTAC	2 cut(s)	382, 2304
DinI	GGCGCC	1 cut(s)	6
DraI	TTTAAA	2 cut(s)	639, 1299
DraIII	CACNNNGTG	1 cut(s)	1985
EaeI	YGGCCR	1 cut(s)	2442
Eam1104I	CTCTTC	5 cut(s)	516, 1482, 1756, 1839, 2239
EarI	CTCTTC	5 cut(s)	516, 1482, 1756, 1839, 2239
Eco130I	CCWWGG	3 cut(s)	282, 657, 1652
Eco47I	GGWCC	2 cut(s)	11, 2287
Eco57I	CTGAAG	3 cut(s)	786, 1737, 2265
Eco81I	CCTNAGG	1 cut(s)	252
Eco88I	CYCGRG	2 cut(s)	1173, 1690
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRI	GAATTC	2 cut(s)	872, 2071
EcoRII	CCWGG	5 cut(s)	7, 317, 363, 412, 1194
EcoT14I	CCWWGG	3 cut(s)	282, 657, 1652
EcoT22I	ATGCAT	3 cut(s)	495, 691, 817
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	282, 657, 1652
FalI	AAGNNNNNCTT	2 cut(s)	1506, 1538
FaqI	GGGAC	1 cut(s)	283
FauNDI	CATATG	1 cut(s)	1387
FbaI	TGATCA	1 cut(s)	2335
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	7 cut(s)	187, 939, 2053, 2145, 2226, 2269, 2451
FokI	GGATG	9 cut(s)	269, 429, 450, 722, 1100, 1145, 1345, 2029, 2148
Fsp4HI	GCNGC	7 cut(s)	187, 939, 2053, 2145, 2226, 2269, 2451
FspBI	CTAG	6 cut(s)	219, 239, 909, 1599, 1653, 1839
GlaI	GCGC	3 cut(s)	6, 67, 137
GluI	GCNGC	7 cut(s)	187, 939, 2053, 2145, 2226, 2269, 2451
GsaI	CCCAGC	1 cut(s)	1557
GsuI	CTGGAG	2 cut(s)	368, 1605
HaeII	RGCGCY	3 cut(s)	8, 69, 139
HaeIII	GGCC	3 cut(s)	1384, 1998, 2444
HapII	CCGG	3 cut(s)	32, 63, 2009
HgaI	GACGC	3 cut(s)	178, 240, 2195
HhaI	GCGC	3 cut(s)	7, 68, 138
Hin1I	GRCGYC	2 cut(s)	5, 232
Hin6I	GCGC	3 cut(s)	5, 66, 136
HinP1I	GCGC	3 cut(s)	5, 66, 136
HincII	GTYRAC	5 cut(s)	206, 361, 532, 850, 1768
HindII	GTYRAC	5 cut(s)	206, 361, 532, 850, 1768
HindIII	AAGCTT	1 cut(s)	2096
HpaI	GTTAAC	1 cut(s)	1768
HpaII	CCGG	3 cut(s)	32, 63, 2009
HphI	GGTGA	4 cut(s)	782, 1142, 1161, 2162
Hpy166II	GTNNAC	7 cut(s)	206, 361, 532, 850, 1169, 1768, 2287
Hpy8I	GTNNAC	7 cut(s)	206, 361, 532, 850, 1169, 1768, 2287
Hpy99I	CGWCG	6 cut(s)	46, 49, 52, 55, 58, 210
HpyAV	CCTTC	9 cut(s)	245, 656, 761, 1241, 1309, 1380, 1988, 2147, 2240
HpyCH4III	ACNGT	6 cut(s)	854, 1269, 1397, 1983, 2284, 2405
HpyCH4IV	ACGT	4 cut(s)	376, 534, 1051, 2159
HpyF10VI	GCNNNNNNNGC	6 cut(s)	761, 938, 1390, 2186, 2329, 2450
HpySE526I	ACGT	4 cut(s)	376, 534, 1051, 2159
Hsp92I	GRCGYC	2 cut(s)	5, 232
HspAI	GCGC	3 cut(s)	5, 66, 136
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	2335
KspAI	GTTAAC	1 cut(s)	1768
LguI	GCTCTTC	2 cut(s)	1756, 2239
LmnI	GCTCC	4 cut(s)	115, 511, 1178, 2461
Lsp1109I	GCAGC	6 cut(s)	925, 2064, 2156, 2237, 2255, 2462
LweI	GCATC	9 cut(s)	676, 698, 742, 802, 820, 941, 1129, 1167, 2051
MaeI	CTAG	6 cut(s)	219, 239, 909, 1599, 1653, 1839
MaeII	ACGT	4 cut(s)	376, 534, 1051, 2159
MaeIII	GTNAC	6 cut(s)	190, 476, 1209, 1269, 2077, 2437
MflI	RGATCY	5 cut(s)	86, 100, 1145, 1223, 1792
MhlI	GDGCHC	2 cut(s)	1395, 1701
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	29, 712, 1430, 2363
MmeI	TCCRAC	1 cut(s)	1906
Mph1103I	ATGCAT	3 cut(s)	495, 691, 817
MseI	TTAA	8 cut(s)	140, 638, 699, 836, 1034, 1298, 1460, 1767
MslI	CAYNNNNRTG	4 cut(s)	415, 612, 740, 2047
MspA1I	CMGCKG	4 cut(s)	197, 1029, 2024, 2147
MspI	CCGG	3 cut(s)	32, 63, 2009
MspR9I	CCNGG	5 cut(s)	9, 319, 365, 414, 1196
Mva1269I	GAATGC	5 cut(s)	343, 495, 1252, 2227, 2323
MvaI	CCWGG	5 cut(s)	9, 319, 365, 414, 1196
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	6 cut(s)	761, 938, 1390, 2186, 2329, 2450
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	2 cut(s)	282, 657
NdeI	CATATG	1 cut(s)	1387
NlaIV	GGNNCC	5 cut(s)	6, 507, 1147, 1383, 1551
NmuCI	GTSAC	2 cut(s)	190, 2077
NsiI	ATGCAT	3 cut(s)	495, 691, 817
NspI	RCATGY	3 cut(s)	430, 826, 1260
PaeI	GCATGC	1 cut(s)	430
PaeR7I	CTCGAG	2 cut(s)	1173, 1690
PagI	TCATGA	1 cut(s)	607
PciSI	GCTCTTC	2 cut(s)	1756, 2239
PcsI	WCGNNNNNNNCGW	3 cut(s)	47, 50, 53
PctI	GAATGC	5 cut(s)	343, 495, 1252, 2227, 2323
PfeI	GAWTC	8 cut(s)	35, 438, 617, 653, 968, 1607, 1907, 2314
PflMI	CCANNNNNTGG	2 cut(s)	392, 473
PkrI	GCNGC	7 cut(s)	188, 940, 2054, 2146, 2227, 2270, 2452
PleI	GAGTC	4 cut(s)	28, 711, 1430, 2362
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	4 cut(s)	28, 711, 1430, 2362
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	5 cut(s)	7, 317, 363, 412, 1194
PspFI	CCCAGC	1 cut(s)	1553
PspGI	CCWGG	5 cut(s)	7, 317, 363, 412, 1194
PspN4I	GGNNCC	5 cut(s)	6, 507, 1147, 1383, 1551
PspPI	GGNCC	4 cut(s)	11, 1382, 1997, 2287
PspPPI	RGGWCCY	1 cut(s)	11
PspXI	VCTCGAGB	1 cut(s)	1173
PstNI	CAGNNNCTG	1 cut(s)	1610
PsuI	RGATCY	5 cut(s)	86, 100, 1145, 1223, 1792
PvuII	CAGCTG	2 cut(s)	2024, 2147
RsaI	GTAC	2 cut(s)	383, 2305
RsaNI	GTAC	2 cut(s)	382, 2304
RseI	CAYNNNNRTG	4 cut(s)	415, 612, 740, 2047
SalI	GTCGAC	1 cut(s)	204
SapI	GCTCTTC	2 cut(s)	1756, 2239
SaqAI	TTAA	8 cut(s)	140, 638, 699, 836, 1034, 1298, 1460, 1767
SatI	GCNGC	7 cut(s)	187, 939, 2053, 2145, 2226, 2269, 2451
Sau96I	GGNCC	4 cut(s)	11, 1382, 1997, 2287
SchI	GAGTC	4 cut(s)	29, 712, 1430, 2363
ScrFI	CCNGG	5 cut(s)	9, 319, 365, 414, 1196
SduI	GDGCHC	2 cut(s)	1395, 1701
SfaNI	GCATC	9 cut(s)	676, 698, 742, 802, 820, 941, 1129, 1167, 2051
SfcI	CTRYAG	1 cut(s)	2259
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	2 cut(s)	1173, 1690
SinI	GGWCC	2 cut(s)	11, 2287
SlaI	CTCGAG	2 cut(s)	1173, 1690
SmiMI	CAYNNNNRTG	4 cut(s)	415, 612, 740, 2047
SmlI	CTYRAG	5 cut(s)	549, 1173, 1690, 2037, 2456
SmoI	CTYRAG	5 cut(s)	549, 1173, 1690, 2037, 2456
SphI	GCATGC	1 cut(s)	430
SsiI	CCGC	3 cut(s)	187, 197, 1027
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	1291
SspMI	CTAG	6 cut(s)	219, 239, 909, 1599, 1653, 1839
StyD4I	CCNGG	5 cut(s)	7, 317, 363, 412, 1194
StyI	CCWWGG	3 cut(s)	282, 657, 1652
TaaI	ACNGT	6 cut(s)	854, 1269, 1397, 1983, 2284, 2405
TaiI	ACGT	4 cut(s)	379, 537, 1054, 2162
TaqI	TCGA	8 cut(s)	205, 620, 1174, 1434, 1691, 2352, 2374, 2397
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	8 cut(s)	35, 438, 617, 653, 968, 1607, 1907, 2314
Tru1I	TTAA	8 cut(s)	140, 638, 699, 836, 1034, 1298, 1460, 1767
Tru9I	TTAA	8 cut(s)	140, 638, 699, 836, 1034, 1298, 1460, 1767
TscAI	CASTG	4 cut(s)	586, 754, 1988, 2082
TseFI	GTSAC	2 cut(s)	190, 2077
TseI	GCWGC	6 cut(s)	938, 2052, 2144, 2225, 2268, 2450
Tsp45I	GTSAC	2 cut(s)	190, 2077
TspGWI	ACGGA	1 cut(s)	1429
TspRI	CASTG	4 cut(s)	586, 754, 1988, 2082
Van91I	CCANNNNNTGG	2 cut(s)	392, 473
VpaK11BI	GGWCC	2 cut(s)	11, 2287
XapI	RAATTY	6 cut(s)	587, 797, 872, 1055, 2071, 2111
XbaI	TCTAGA	1 cut(s)	1598
XceI	RCATGY	3 cut(s)	430, 826, 1260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XhoI	CTCGAG	2 cut(s)	1173, 1690
XmaJI	CCTAGG	1 cut(s)	1652
XmiI	GTMKAC	1 cut(s)	205
XspI	CTAG	6 cut(s)	219, 239, 909, 1599, 1653, 1839
Zsp2I	ATGCAT	3 cut(s)	495, 691, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.