AT1G08530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006668
Physical Location & Seq
Forward (+)
2700981 .. 2703162
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08530.2

Sequence Viewer

Length: 774 bp
ATGAAATCTCTCTGCTTCATTTCTACAGCTCCATTGATTCGTTCGCCTCCATTTCTCGATCTTTCTCCAACAAGCTTGAATCGATTTACCCTTAAAATTCCAGCTTCTCTCTATGTATCTCATCCAACAAGATGCAGCATTTCAAACCCGTCGAGCTCTGAGGAATTGTTGAATTCCAATGGTGGAATGTCTAGGGCATCGATTAGTGTCTTCGGAGGTACTTCCCTTAACAATCTCAAGATGCAAGTGGGCAGTCCAATTTCTCTGCATTCAATCAATCCATTAGCAAAGCTGAGTTTGAGTGATCAGGCATTTCTTCTCTTGGCCTTCATCGTTTGCACGACTTCAGTGGCTTTTACAAGTCTTGTGATTACAGCTATTCCTACACTTGTGGCCATGGGTAGAGCTGCAACTTCCTTTGCAAAGTTAGCTGACACAGCTCGCAAAGAACTCCCTAGTACATTGGCAGCGGTAAGGCTCTCTGGCATGGAAATAAGCGATCTTACTCTTGAATTGAGCGATTTAAGCCAAGATATAACAGATGGGATAAACAAATCAGCTAAAGCGGTTCAAGCAGCTGAAGCTGGAATCAAACAGATTGGAACACTTGCACAGCAGCAAACTCTCTCAATGATTGAAGAGAGAGCAAATTTACCAGAAATATCACTACAACCTGTTGTGGCTGGTGCAGCCGAAAAGACTTCTCACGCAATCGGCAGTGCAACCAAGAGACTAATGAACATTATAACCGGAGGAAACAAGGATGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

27.01

Weight (kDa)

7.72

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
AciI CCGC 2 cut(s) 470, 566
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 3 cut(s) 96, 172, 649
AcuI CTGAAG 2 cut(s) 330, 600
AfaI GTAC 2 cut(s) 220, 460
AgsI TTSAA 7 cut(s) 79, 144, 172, 273, 512, 572, 638
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 724
AoxI GGCC 2 cut(s) 324, 393
ApeKI GCWGC 6 cut(s) 135, 407, 467, 575, 616, 689
ApoI RAATTY 3 cut(s) 96, 172, 649
BalI TGGCCA 1 cut(s) 395
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 6 cut(s) 147, 394, 479, 587, 628, 701
BccI CCATC 1 cut(s) 536
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 724
BfaI CTAG 2 cut(s) 192, 456
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 6 cut(s) 136, 408, 468, 576, 617, 690
BlsI GCNGC 6 cut(s) 137, 409, 469, 577, 618, 691
BmsI GCATC 3 cut(s) 122, 206, 231
BpiI GAAGAC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 221
Bsa29I ATCGAT 2 cut(s) 82, 200
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 749
BseCI ATCGAT 2 cut(s) 82, 200
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 121, 769
BseMII CTCAG 2 cut(s) 150, 284
BseXI GCAGC 6 cut(s) 147, 394, 479, 587, 628, 701
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 2 cut(s) 326, 395
BshVI ATCGAT 2 cut(s) 82, 200
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 750
BsmAI GTCTC 1 cut(s) 724
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 2 cut(s) 326, 395
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 58, 304, 499
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 470, 566
BspANI GGCC 2 cut(s) 326, 395
BspCNI CTCAG 2 cut(s) 151, 285
BspDI ATCGAT 2 cut(s) 82, 200
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 3 cut(s) 58, 304, 499
BssT1I CCWWGG 1 cut(s) 396
Bst6I CTCTTC 1 cut(s) 633
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 159, 293
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 121, 769
BstKTI GATC 3 cut(s) 61, 307, 502
BstMAI GTCTC 1 cut(s) 724
BstMBI GATC 3 cut(s) 58, 304, 499
BstMWI GCNNNNNNNGC 6 cut(s) 428, 437, 525, 572, 581, 689
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 6 cut(s) 147, 394, 479, 587, 628, 701
BstV2I GAAGAC 1 cut(s) 202
Bsu15I ATCGAT 2 cut(s) 82, 200
BsuRI GGCC 2 cut(s) 326, 395
BsuTUI ATCGAT 2 cut(s) 82, 200
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 121, 769
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 2 cut(s) 354, 724
Cac8I GCNNGC 1 cut(s) 442
ClaI ATCGAT 2 cut(s) 82, 200
Csp6I GTAC 2 cut(s) 219, 459
CviAII CATG 2 cut(s) 397, 487
CviQI GTAC 2 cut(s) 219, 459
DdeI CTNAG 2 cut(s) 159, 293
DpnI GATC 3 cut(s) 60, 306, 501
DpnII GATC 3 cut(s) 58, 304, 499
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 156
Eco57I CTGAAG 2 cut(s) 330, 600
EcoICRI GAGCTC 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 2 cut(s) 400, 490
FaiI YATR 5 cut(s) 114, 398, 488, 536, 746
FatI CATG 2 cut(s) 396, 486
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 6 cut(s) 136, 408, 468, 576, 617, 690
FokI GGATG 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 6 cut(s) 136, 408, 468, 576, 617, 690
FspBI CTAG 2 cut(s) 192, 456
GluI GCNGC 6 cut(s) 136, 408, 468, 576, 617, 690
HaeIII GGCC 2 cut(s) 326, 395
HapII CCGG 1 cut(s) 750
Hin1II CATG 2 cut(s) 400, 490
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 3 cut(s) 37, 79, 588
HpaII CCGG 1 cut(s) 750
Hpy188I TCNGA 2 cut(s) 160, 215
Hpy188III TCNNGA 3 cut(s) 56, 238, 509
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 337
HpyCH4V TGCA 9 cut(s) 135, 244, 268, 339, 410, 422, 611, 689, 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 428, 437, 525, 572, 581, 689
HpyF3I CTNAG 2 cut(s) 159, 293
Hsp92II CATG 2 cut(s) 400, 490
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 58, 304, 499
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 8 cut(s) 114, 293, 468, 570, 669, 669, 687, 763
Lsp1109I GCAGC 6 cut(s) 147, 394, 479, 587, 628, 701
LweI GCATC 3 cut(s) 122, 206, 231
MaeI CTAG 2 cut(s) 192, 456
MalI GATC 3 cut(s) 60, 306, 501
MboI GATC 3 cut(s) 58, 304, 499
MboII GAAGA 3 cut(s) 202, 308, 650
MhlI GDGCHC 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 6 cut(s) 96, 164, 172, 258, 512, 649
MluNI TGGCCA 1 cut(s) 395
MmeI TCCRAC 2 cut(s) 92, 149
MnlI CCTC 4 cut(s) 57, 154, 209, 746
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 3 cut(s) 93, 228, 524
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 2 cut(s) 470, 578
MspI CCGG 1 cut(s) 750
Mva1269I GAATGC 1 cut(s) 268
MwoI GCNNNNNNNGC 6 cut(s) 428, 437, 525, 572, 581, 689
NcoI CCATGG 1 cut(s) 396
NdeII GATC 3 cut(s) 58, 304, 499
NlaIII CATG 2 cut(s) 400, 490
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 3 cut(s) 37, 79, 588
PkrI GCNGC 6 cut(s) 137, 409, 469, 577, 618, 691
PsiI TTATAA 1 cut(s) 746
Psp124BI GAGCTC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 2 cut(s) 220, 460
RsaNI GTAC 2 cut(s) 219, 459
SacI GAGCTC 1 cut(s) 158
SaqAI TTAA 3 cut(s) 93, 228, 524
SatI GCNGC 6 cut(s) 136, 408, 468, 576, 617, 690
Sau3AI GATC 3 cut(s) 58, 304, 499
SduI GDGCHC 1 cut(s) 158
SfaNI GCATC 3 cut(s) 122, 206, 231
SfcI CTRYAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 6 cut(s) 96, 164, 172, 258, 512, 649
SsiI CCGC 2 cut(s) 470, 566
SspMI CTAG 2 cut(s) 192, 456
SstI GAGCTC 1 cut(s) 158
StyI CCWWGG 1 cut(s) 396
TaqI TCGA 4 cut(s) 57, 82, 152, 200
TasI AATT 6 cut(s) 96, 164, 172, 258, 512, 649
TatI WGTACW 1 cut(s) 458
TfiI GAWTC 3 cut(s) 37, 79, 588
Tru1I TTAA 3 cut(s) 93, 228, 524
Tru9I TTAA 3 cut(s) 93, 228, 524
TscAI CASTG 2 cut(s) 354, 724
TseI GCWGC 6 cut(s) 135, 407, 467, 575, 616, 689
TspDTI ATGAA 4 cut(s) 7, 17, 319, 752
TspRI CASTG 2 cut(s) 354, 724
XapI RAATTY 3 cut(s) 96, 172, 649
XspI CTAG 2 cut(s) 192, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.