Prupe.1G354200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006668
Physical Location & Seq
Forward (+)
32906735 .. 32909732
2998 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G354200.3

Sequence Viewer

Length: 843 bp
ATGAAATCTGCTCACTTCTCACACCTCTCAGCCCCAATACGTGCCCAAAATCCTAAACACACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGTTAATCTTCTCCAGCCCTGCAAATTCAGCTCTGTTTCTCTGACTTCGCCTTCAAAATCGTCCCGTTTATTCACGGTTTTTGCTTCCAATTCCGCTAAAACGTCCCCTTCCCTGTCCGACCCTGCCGTGACGGAGCTCACCAAGGATGCTTTTCTTCAAATCGATAACGACGTGTCGCAAGGTCCGTTGAATGTGGAAGTCAGAAACCCTAGCGTTCCGAGTCCGTCGGTGGCCAAATTGAGCTTGAGCGACCAAGCTTTCTTTCTCCTGACCTTCATCGCCTGCACGACTTCTGTGGCATTTACGAGCCTTGTAATTGCAGCTGTACCAACGCTTTGTGCAATGGGGAGAGCTGCACTATCTCTTTCAAAGCTGGCAGATACAGCTCGTGAAGAACTCCCTAGTACTATGGTTGCCATTAGGCTTTCAGGCATGGAAATAAGTGATCTTACACTGGAACTGAGTGATCTAAGCCAAGAGATAGCTGATGGGGTCAGCAAATCCACTCAAGCTGTTCAAGCTGCTGAAGCTGGGATTCGGCAGATTGGTTCACTTGCTCGACAGCAGACTATGTCTATGATTCAAGAGAGGGCGAGCCTGCCCATCATCTCTTTGCAACCTGCTGTTGTTGGAGCAGCAAAGAAGACTTCTCGTGCTGTTGGCCAAGCCACCAGGACGCTCATGAATATAATCTCTCGAAGGGACTTAGAGAATAAGGATGACATTGGAATTGATAGGGTGGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

29.6

Weight (kDa)

8.48

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 721
AciI CCGC 1 cut(s) 186
AcoI YGGCCR 2 cut(s) 324, 754
AcsI RAATTY 2 cut(s) 116, 837
AcuI CTGAAG 2 cut(s) 75, 639
AfaI GTAC 2 cut(s) 420, 499
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 6 cut(s) 147, 251, 283, 462, 611, 677
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 764
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
Alw21I GWGCWC 1 cut(s) 231
AoxI GGCC 2 cut(s) 324, 754
ApeKI GCWGC 4 cut(s) 413, 446, 614, 728
ApoI RAATTY 2 cut(s) 116, 837
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 46
BalI TGGCCA 2 cut(s) 326, 756
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 2 cut(s) 480, 744
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 425, 433, 601, 740
BccI CCATC 2 cut(s) 575, 704
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 766
BfaI CTAG 2 cut(s) 303, 495
BfuAI ACCTGC 1 cut(s) 721
BisI GCNGC 4 cut(s) 414, 447, 615, 729
BlsI GCNGC 4 cut(s) 415, 448, 616, 730
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 766
Bme18I GGWCC 1 cut(s) 275
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 766
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 358, 585
Bsa29I ATCGAT 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 766
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 244, 817
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 42, 545
BseNI ACTGG 1 cut(s) 552
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 4 cut(s) 425, 433, 601, 740
BseYI CCCAGC 1 cut(s) 623
BsgI GTGCAG 2 cut(s) 361, 432
BshFI GGCC 2 cut(s) 326, 756
BshVI ATCGAT 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 231
BslFI GGGAC 3 cut(s) 139, 181, 809
BsmFI GGGAC 3 cut(s) 139, 181, 809
BsnI GGCC 2 cut(s) 326, 756
Bsp1286I GDGCHC 2 cut(s) 46, 231
Bsp143I GATC 2 cut(s) 538, 559
BspACI CCGC 1 cut(s) 186
BspANI GGCC 2 cut(s) 326, 756
BspCNI CTCAG 2 cut(s) 41, 546
BspDI ATCGAT 1 cut(s) 255
BspHI TCATGA 1 cut(s) 774
BspMI ACCTGC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 538, 559
BssSI CACGAG 2 cut(s) 480, 744
BssT1I CCWWGG 1 cut(s) 234
Bst2BI CACGAG 2 cut(s) 480, 744
Bst2UI CCWGG 1 cut(s) 766
Bst4CI ACNGT 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 41
BstC8I GCNNGC 4 cut(s) 376, 468, 688, 692
BstDEI CTNAG 4 cut(s) 28, 554, 563, 799
BstF5I GGATG 2 cut(s) 244, 817
BstKTI GATC 2 cut(s) 541, 562
BstMBI GATC 2 cut(s) 538, 559
BstMWI GCNNNNNNNGC 4 cut(s) 120, 476, 611, 620
BstNI CCWGG 1 cut(s) 766
BstSCI CCNGG 1 cut(s) 764
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 4 cut(s) 425, 433, 601, 740
BstV2I GAAGAC 1 cut(s) 743
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 2 cut(s) 326, 756
BsuTUI ATCGAT 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 355
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 244, 817
BtsIMutI CAGTG 1 cut(s) 545
BveI ACCTGC 1 cut(s) 721
Cac8I GCNNGC 4 cut(s) 376, 468, 688, 692
CciI TCATGA 1 cut(s) 774
Cfr13I GGNCC 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 1 cut(s) 778
Csp6I GTAC 2 cut(s) 419, 498
CviAII CATG 2 cut(s) 526, 775
CviQI GTAC 2 cut(s) 419, 498
DdeI CTNAG 4 cut(s) 28, 554, 563, 799
DpnI GATC 2 cut(s) 540, 561
DpnII GATC 2 cut(s) 538, 559
EaeI YGGCCR 2 cut(s) 324, 754
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 75, 639
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 764
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 529, 778
FaiI YATR 6 cut(s) 503, 527, 665, 671, 776, 782
FaqI GGGAC 3 cut(s) 139, 181, 809
FatI CATG 2 cut(s) 525, 774
Fnu4HI GCNGC 4 cut(s) 414, 447, 615, 729
FokI GGATG 2 cut(s) 251, 824
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 4 cut(s) 414, 447, 615, 729
FspBI CTAG 2 cut(s) 303, 495
GluI GCNGC 4 cut(s) 414, 447, 615, 729
GsaI CCCAGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 2 cut(s) 326, 756
HgaI GACGC 1 cut(s) 778
Hin1II CATG 2 cut(s) 529, 778
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 3 cut(s) 313, 628, 673
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 644
Hpy188I TCNGA 4 cut(s) 135, 211, 296, 312
Hpy188III TCNNGA 5 cut(s) 361, 482, 677, 775, 789
Hpy8I GTNNAC 1 cut(s) 644
Hpy99I CGWCG 2 cut(s) 266, 322
HpyAV CCTTC 4 cut(s) 153, 210, 376, 786
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 3 cut(s) 40, 194, 264
HpyCH4V TGCA 6 cut(s) 114, 378, 413, 434, 449, 709
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 476, 611, 620
HpyF3I CTNAG 4 cut(s) 28, 554, 563, 799
HpySE526I ACGT 3 cut(s) 40, 194, 264
Hsp92II CATG 2 cut(s) 529, 778
Kzo9I GATC 2 cut(s) 538, 559
LmnI GCTCC 2 cut(s) 226, 725
Lsp1109I GCAGC 4 cut(s) 425, 433, 601, 740
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 303, 495
MaeII ACGT 3 cut(s) 40, 194, 264
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 540, 561
MboI GATC 2 cut(s) 538, 559
MhlI GDGCHC 2 cut(s) 46, 231
MlsI TGGCCA 2 cut(s) 326, 756
MluCI AATT 6 cut(s) 116, 181, 329, 408, 822, 837
MluNI TGGCCA 2 cut(s) 326, 756
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 2 cut(s) 234, 703
MnlI CCTC 2 cut(s) 35, 675
Mox20I TGGCCA 2 cut(s) 326, 756
MscI TGGCCA 2 cut(s) 326, 756
MseI TTAA 1 cut(s) 96
Msp20I TGGCCA 2 cut(s) 326, 756
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 766
MvaI CCWGG 1 cut(s) 766
MwoI GCNNNNNNNGC 4 cut(s) 120, 476, 611, 620
NdeII GATC 2 cut(s) 538, 559
NlaIII CATG 2 cut(s) 529, 778
NmuCI GTSAC 1 cut(s) 220
PagI TCATGA 1 cut(s) 774
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 275
PfeI GAWTC 2 cut(s) 628, 673
PflFI GACNNNGTC 1 cut(s) 664
PkrI GCNGC 4 cut(s) 415, 448, 616, 730
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 764
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 1 cut(s) 764
PspPI GGNCC 1 cut(s) 275
PsyI GACNNNGTC 1 cut(s) 664
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 420, 499
RsaNI GTAC 2 cut(s) 419, 498
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 4 cut(s) 414, 447, 615, 729
Sau3AI GATC 2 cut(s) 538, 559
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 766
SduI GDGCHC 2 cut(s) 46, 231
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 337, 600
SmoI CTYRAG 2 cut(s) 337, 600
Sse9I AATT 6 cut(s) 116, 181, 329, 408, 822, 837
SsiI CCGC 1 cut(s) 186
SspMI CTAG 2 cut(s) 303, 495
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 764
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 3 cut(s) 43, 197, 267
TaqI TCGA 3 cut(s) 255, 652, 790
TasI AATT 6 cut(s) 116, 181, 329, 408, 822, 837
TatI WGTACW 1 cut(s) 497
TfiI GAWTC 2 cut(s) 628, 673
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 4 cut(s) 413, 446, 614, 728
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 17, 358, 791
TspGWI ACGGA 3 cut(s) 239, 267, 306
TspRI CASTG 1 cut(s) 552
Tth111I GACNNNGTC 1 cut(s) 664
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 116, 837
XspI CTAG 2 cut(s) 303, 495
ZrmI AGTACT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.