Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006668

Physical Location & Seq

Genomic Coordinates Reverse (-)

18536537 .. 18539625

Gene Structure 3089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAATCTTTACAACTCTCCACCGAATTTCGTGCCCTAAATCCCAATCACACTTGTTCTTCTTCTTCGATCACTCTCCTCCGACCCTGCAAATTCAACTCTGTTTCCCTCGCCTCGCCTCCCAAGCCCTCCCGCTTAATCACGCTTTGCGCTTCCAATTCCGACAAACCCTCGTCGGAATCGGCGGCGGTGGAGTCCATCAGGGAAGGGTTTCTTCAGTTTCAGAACGACCCGTCGCAGAGTCAGTGGAATGTGGAAGTCGGAAGCCCTAGCGTTCCGGGTCCGTCCGTGGCGAAATTGAGCTTGGGTGACCAGGCTTTCTTTCTCATGGCCTTCATCGCCTGCACGACTTCGGTGGCATTTACGAGCCTTGTAATTGCAGCTGTCCCGACGATATGTGCAATGGGGAGAGCTGCAACATCTCTTTCAAAGCTGGCAGATACAGCTCGTCAAGAACTCCCTAGTACTATGGCTGCCATTAGGCTCTCAGGCATGGAAATAAGTGATCTCACACTGGAGCTGAATGACCTAAGCCAAGAGATAGCTGATGGGGTCAACAAATCCACTCAAGCTGTTCAAGCAGCAGAAGCTGGGATTCGGCAGATTGGCTCACTCGCTCGGCAGCAAACTATGTCAATGATTCAAGAGAGGGCAAACCTGCCAGTAATCTCTTTGCAACCTGCCGTAATTGGAGCAGCAAAGAAGACCTCTCATGCTGTTGGCCAAGTGACTAAGAAGTTCATGAATATAATCTCTCAAAGGGACTCAGAGGATGAGGATGACATTGGAATTGATAGGGTGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

28.63

Weight (kDa)

5.51

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08530 AT1G08530 AT1G08530
fragaria_vesca	FvH4_2g21680
malus_domestica	MD10G1185200.v1.1
prunus_persica	Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.8G225000_v2.0.a1
pyrus_communis	pycom10g16030
rosa_chinensis	RchiOBHm_Chr6g0288361
rosa_laevigata	RLG00000012413 RLG00000029638
rosa_multiflora	Rmu_sc0001038.1_g000008
rosa_roxburghii	Rroxscaffold_7G00180130
rosa_rugosa	Rorug06G0195800 Rorug06G0195900
rosa_samantha	Rh6AG306800 Rh6BG312800 Rh6CG320700 Rh6DG306000 Rh7DG490500
rosa_wichuraiana	Rw0G011110 Rw1G016060 Rw6G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	666, 688
AciI	CCGC	3 cut(s)	133, 185, 188
AcoI	YGGCCR	1 cut(s)	721
AcsI	RAATTY	3 cut(s)	26, 92, 804
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	97, 429, 578, 644
AjnI	CCWGG	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	9 cut(s)	303, 383, 413, 433, 446, 520, 545, 572, 590
AluI	AGCT	9 cut(s)	303, 383, 413, 433, 446, 520, 545, 572, 590
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	2 cut(s)	330, 721
ApeKI	GCWGC	6 cut(s)	380, 413, 473, 581, 622, 695
ApoI	RAATTY	3 cut(s)	26, 92, 804
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	710
BbvI	GCAGC	6 cut(s)	392, 400, 460, 593, 634, 707
BccI	CCATC	2 cut(s)	206, 542
BceAI	ACGGC	1 cut(s)	668
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	2 cut(s)	270, 462
BfuAI	ACCTGC	2 cut(s)	666, 688
BisI	GCNGC	7 cut(s)	186, 381, 414, 474, 582, 623, 696
BlsI	GCNGC	7 cut(s)	187, 382, 415, 475, 583, 624, 697
BmcAI	AGTACT	1 cut(s)	466
Bme1390I	CCNGG	2 cut(s)	279, 314
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	279, 314
BpiI	GAAGAC	1 cut(s)	710
BpmI	CTGGAG	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	288
Bse1I	ACTGG	2 cut(s)	519, 662
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	778, 784
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	501, 780
BseNI	ACTGG	2 cut(s)	519, 662
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	6 cut(s)	392, 400, 460, 593, 634, 707
BseYI	CCCAGC	1 cut(s)	590
BsgI	GTGCAG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	332, 723
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	2 cut(s)	371, 776
BsmFI	GGGAC	2 cut(s)	371, 776
BsnI	GGCC	2 cut(s)	332, 723
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	69, 505
BspACI	CCGC	3 cut(s)	133, 185, 188
BspANI	GGCC	2 cut(s)	332, 723
BspCNI	CTCAG	2 cut(s)	500, 779
BspHI	TCATGA	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	282
BspMI	ACCTGC	2 cut(s)	666, 688
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	519, 662
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	69, 505
Bst2UI	CCWGG	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	343, 435
BstDEI	CTNAG	4 cut(s)	487, 530, 732, 766
BstDSI	CCRYGG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	308
BstF5I	GGATG	2 cut(s)	778, 784
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	72, 508
BstMBI	GATC	2 cut(s)	69, 505
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 338, 443, 578, 587
BstNI	CCWGG	1 cut(s)	314
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	277, 312
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	6 cut(s)	392, 400, 460, 593, 634, 707
BstV2I	GAAGAC	1 cut(s)	710
BsuRI	GGCC	2 cut(s)	332, 723
BtgI	CCRYGG	1 cut(s)	288
BtgZI	GCGATG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	778, 784
BtsIMutI	CAGTG	2 cut(s)	251, 512
BveI	ACCTGC	2 cut(s)	666, 688
Cac8I	GCNNGC	2 cut(s)	343, 435
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	741
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	4 cut(s)	328, 493, 713, 742
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	4 cut(s)	487, 530, 732, 766
DpnI	GATC	2 cut(s)	71, 507
DpnII	GATC	2 cut(s)	69, 505
EaeI	YGGCCR	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	312
FaeI	CATG	4 cut(s)	331, 496, 716, 745
FaiI	YATR	8 cut(s)	329, 397, 470, 494, 632, 714, 743, 749
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	2 cut(s)	371, 776
FatI	CATG	4 cut(s)	327, 492, 712, 741
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	7 cut(s)	186, 381, 414, 474, 582, 623, 696
FokI	GGATG	2 cut(s)	785, 791
Fsp4HI	GCNGC	7 cut(s)	186, 381, 414, 474, 582, 623, 696
FspBI	CTAG	2 cut(s)	270, 462
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	7 cut(s)	186, 381, 414, 474, 582, 623, 696
GsaI	CCCAGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	332, 723
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	331, 496, 716, 745
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	6 cut(s)	179, 194, 241, 595, 640, 764
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	6 cut(s)	83, 163, 178, 225, 263, 769
Hpy188III	TCNNGA	4 cut(s)	388, 452, 644, 742
Hpy8I	GTNNAC	1 cut(s)	556
Hpy99I	CGWCG	3 cut(s)	178, 238, 394
HpyAV	CCTTC	2 cut(s)	200, 343
HpyCH4V	TGCA	6 cut(s)	90, 345, 380, 401, 416, 676
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 338, 443, 578, 587
HpyF3I	CTNAG	4 cut(s)	487, 530, 732, 766
Hsp92II	CATG	4 cut(s)	331, 496, 716, 745
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	69, 505
LmnI	GCTCC	2 cut(s)	517, 692
Lsp1109I	GCAGC	6 cut(s)	392, 400, 460, 593, 634, 707
MaeI	CTAG	2 cut(s)	270, 462
MaeIII	GTNAC	2 cut(s)	308, 727
MalI	GATC	2 cut(s)	71, 507
MboI	GATC	2 cut(s)	69, 505
MboII	GAAGA	5 cut(s)	51, 54, 57, 206, 715
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	723
MluCI	AATT	8 cut(s)	26, 92, 157, 296, 375, 687, 789, 804
MluNI	TGGCCA	1 cut(s)	723
MlyI	GAGTC	3 cut(s)	203, 250, 758
MmeI	TCCRAC	4 cut(s)	106, 156, 186, 241
Mox20I	TGGCCA	1 cut(s)	723
MroXI	GAANNNNTTC	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	723
MseI	TTAA	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	723
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	279, 314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	5 cut(s)	124, 338, 443, 578, 587
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	69, 505
NlaIII	CATG	4 cut(s)	331, 496, 716, 745
NlaIV	GGNNCC	1 cut(s)	282
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	2 cut(s)	308, 727
PagI	TCATGA	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	3 cut(s)	179, 595, 640
PkrI	GCNGC	7 cut(s)	187, 382, 415, 475, 583, 624, 697
PleI	GAGTC	3 cut(s)	202, 249, 758
PpsI	GAGTC	3 cut(s)	202, 249, 758
Psp6I	CCWGG	1 cut(s)	312
PspEI	GGTNACC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	7 cut(s)	186, 381, 414, 474, 582, 623, 696
Sau3AI	GATC	2 cut(s)	69, 505
Sau96I	GGNCC	1 cut(s)	281
ScaI	AGTACT	1 cut(s)	466
SchI	GAGTC	3 cut(s)	203, 250, 758
ScrFI	CCNGG	2 cut(s)	279, 314
SduI	GDGCHC	1 cut(s)	37
SinI	GGWCC	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	8 cut(s)	26, 92, 157, 296, 375, 687, 789, 804
SsiI	CCGC	3 cut(s)	133, 185, 188
SspMI	CTAG	2 cut(s)	270, 462
StyD4I	CCNGG	2 cut(s)	277, 312
TaqI	TCGA	1 cut(s)	68
TasI	AATT	8 cut(s)	26, 92, 157, 296, 375, 687, 789, 804
TatI	WGTACW	1 cut(s)	464
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	3 cut(s)	179, 595, 640
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	2 cut(s)	251, 519
TseFI	GTSAC	2 cut(s)	308, 727
TseI	GCWGC	6 cut(s)	380, 413, 473, 581, 622, 695
Tsp45I	GTSAC	2 cut(s)	308, 727
TspDTI	ATGAA	4 cut(s)	17, 325, 730, 758
TspGWI	ACGGA	2 cut(s)	273, 277
TspRI	CASTG	2 cut(s)	251, 519
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	3 cut(s)	26, 92, 804
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	2 cut(s)	270, 462
ZrmI	AGTACT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.