Rorug06G0195900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006668
Physical Location & Seq
Reverse (-)
31637934 .. 31639174
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0195900.1

Sequence Viewer

Length: 264 bp
ATGGAGAAGAGCAAGTCATTCCCTGAATACAGCTCGGCTTACTCCGGCGAGTTCGGGTTCCGGGAGCGGTCCAACTCGTACAACTTCAACGGGCCAACCCAGAAGGGAAGCGGGTTTGCAACGTCCGGCGATCCGGAGCTCCAGAGGAAGAAGAGAGTTGCTTCTTACAACGTGTTTACCACGGAAGGTAAGCTCAAGACGAGTCTTAAAAACAGCTTCAAGTGGATCAAGAACAGGTTCACCGATGTTCGTTACGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

10.01

Weight (kDa)

9.82

Isoelectric Point (pI)

22.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 43 - 85 1.9e-23 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 2 cut(s) 67, 111
AclWI GGATC 2 cut(s) 125, 233
AfaI GTAC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 88, 220
AluBI AGCT 4 cut(s) 33, 139, 193, 216
AluI AGCT 4 cut(s) 33, 139, 193, 216
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 2 cut(s) 125, 233
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 69, 92
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 232
AvaII GGWCC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BcnI CCSGG 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 69, 92
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 133
BseAI TCCGGA 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 180
BshFI GGCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 4 cut(s) 45, 61, 126, 134
BsnI GGCC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 141
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 2 cut(s) 130, 225
BspACI CCGC 2 cut(s) 67, 111
BspANI GGCC 1 cut(s) 94
BspEI TCCGGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 2 cut(s) 125, 233
BspQI GCTCTTC 1 cut(s) 2
BsrBI CCGCTC 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 130, 225
Bst6I CTCTTC 2 cut(s) 2, 146
BstDSI CCRYGG 1 cut(s) 180
BstKTI GATC 2 cut(s) 133, 228
BstMBI GATC 2 cut(s) 130, 225
BstSCI CCNGG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 69, 92
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 6 cut(s) 33, 38, 94, 139, 193, 216
CviKI_1 RGCY 6 cut(s) 33, 38, 94, 139, 193, 216
CviQI GTAC 1 cut(s) 79
DpnI GATC 2 cut(s) 132, 227
DpnII GATC 2 cut(s) 130, 225
Eam1104I CTCTTC 2 cut(s) 2, 146
EarI CTCTTC 2 cut(s) 2, 146
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 141
FaiI YATR 1 cut(s) 262
FauI CCCGC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 94
HapII CCGG 4 cut(s) 45, 61, 126, 134
HinfI GANTC 1 cut(s) 202
HpaII CCGG 4 cut(s) 45, 61, 126, 134
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 177, 240
Hpy188III TCNNGA 4 cut(s) 134, 142, 196, 229
Hpy8I GTNNAC 2 cut(s) 177, 240
HpyAV CCTTC 2 cut(s) 97, 179
HpyCH4IV ACGT 2 cut(s) 122, 171
HpyCH4V TGCA 1 cut(s) 119
HpySE526I ACGT 2 cut(s) 122, 171
Kpn2I TCCGGA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 130, 225
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 3 cut(s) 64, 136, 144
LpnPI CCDG 8 cut(s) 36, 58, 74, 113, 139, 147, 155, 220
MaeII ACGT 2 cut(s) 122, 171
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 132, 227
MbiI CCGCTC 1 cut(s) 67
MboI GATC 2 cut(s) 130, 225
MboII GAAGA 3 cut(s) 19, 160, 163
MhlI GDGCHC 1 cut(s) 141
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 1 cut(s) 138
MroI TCCGGA 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 1 cut(s) 207
MspI CCGG 4 cut(s) 45, 61, 126, 134
MspR9I CCNGG 1 cut(s) 62
NciI CCSGG 1 cut(s) 62
NdeII GATC 2 cut(s) 130, 225
NlaIV GGNNCC 1 cut(s) 59
NmeAIII GCCGAG 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 2
PdmI GAANNNNTTC 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 60
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 69, 92
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 2 cut(s) 130, 225
Sau96I GGNCC 2 cut(s) 69, 92
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 141
SetI ASST 8 cut(s) 35, 125, 141, 174, 190, 195, 218, 239
SinI GGWCC 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SsiI CCGC 2 cut(s) 67, 111
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 60
TaiI ACGT 2 cut(s) 125, 174
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.