Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006668

Physical Location & Seq

Genomic Coordinates Reverse (-)

19639030 .. 19643071

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAATCTTTACACCTTTCCGCCCGATTTCGTGCGCTAAATCCCAATCGCACTTGTTCATCTTCTTCTGCTTCGATCACTCTCCTCCGACCCTGCAAATTCAACTCTGTTTCCCTCGCCTCGCCTCCCAAGCCCTCCCGCTTAATCACGCTTTGCGCTTCCAATTCCGACAAGCCGTCGTCGGAATCGGCGGTGGCGGAGTCCATCAGGGAAGGGTTTCTTCAGTTTCAGAACGACCCGTCGCAGAGTCAGTGGAATGTGGAAGTCGGAAGCCCTAACGTTCCGGGTCCGTCCGTGGCGAAATTGAGCTTGGGCGACCAGGCTTTCTTTCTCATGGCCTTCATCGCCTGCACGACTTCGGTGGCATTTACGAGCCTTGTAATTGCAGCTGTCCCTACGATATGTGCAATGGGGAGAGCTGCAACATCTCTTTCAAAGCTGGCAGATACAGCTCGTCAAGAACTCCCTAGTACTATGGCTGCCATTAGGCTCTCAGGCATGGAAATAAGTGATCTCACACTGGAACTGAATGACCTAAGCCAAGAGATAGCTGATGGGGTCAACAAATCCACTCAAGCTGTTCAAGCAGCAGAAGCTGGGATTCGGCAGATTGGCTCACTCGCTCGGCAGCAAACGATGTCAATGATTCAAGAGAGGGCAAACCTGCCAGTAATCTCTTTGCAACCTGCCGTAATTGGAGCAGCAAAGAAGACCTCTCATGCTGTTGGCCAAGTGACTAAGAAGTTCATGAATATAATCTCTCAAAGGGACTCAGAGGATAAGGATGACATTGGAATTGATAGGGTGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

28.84

Weight (kDa)

8.3

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08530 AT1G08530 AT1G08530
fragaria_vesca	FvH4_2g21680
malus_domestica	MD10G1185200.v1.1
prunus_persica	Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.8G225000_v2.0.a1
pyrus_communis	pycom10g16030
rosa_chinensis	RchiOBHm_Chr6g0288361
rosa_laevigata	RLG00000012413 RLG00000029638
rosa_multiflora	Rmu_sc0001038.1_g000008
rosa_roxburghii	Rroxscaffold_7G00180130
rosa_rugosa	Rorug06G0195800 Rorug06G0195900
rosa_samantha	Rh6AG306800 Rh6BG312800 Rh6CG320700 Rh6DG306000 Rh7DG490500
rosa_wichuraiana	Rw0G011110 Rw1G016060 Rw6G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	672, 694
AciI	CCGC	4 cut(s)	21, 139, 191, 197
AclI	AACGTT	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	2 cut(s)	98, 810
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	472
AgsI	TTSAA	4 cut(s)	103, 435, 584, 650
AhdI	GACNNNNNGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	8 cut(s)	309, 389, 419, 439, 452, 551, 578, 596
AluI	AGCT	8 cut(s)	309, 389, 419, 439, 452, 551, 578, 596
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	2 cut(s)	336, 727
ApeKI	GCWGC	6 cut(s)	386, 419, 479, 587, 628, 701
ApoI	RAATTY	2 cut(s)	98, 810
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	37, 158
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	729
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	6 cut(s)	398, 406, 466, 599, 640, 713
BccI	CCATC	2 cut(s)	212, 548
BceAI	ACGGC	2 cut(s)	160, 674
BciT130I	CCWGG	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	285
BfaI	CTAG	1 cut(s)	468
BfuAI	ACCTGC	2 cut(s)	672, 694
BisI	GCNGC	6 cut(s)	387, 420, 480, 588, 629, 702
BlsI	GCNGC	6 cut(s)	388, 421, 481, 589, 630, 703
BmcAI	AGTACT	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	285, 320
Bme18I	GGWCC	1 cut(s)	287
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	2 cut(s)	285, 320
BpiI	GAAGAC	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	294
Bse1I	ACTGG	2 cut(s)	525, 668
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	790
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	507, 786
BseNI	ACTGG	2 cut(s)	525, 668
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	6 cut(s)	398, 406, 466, 599, 640, 713
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	338, 729
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	377, 782
BsmFI	GGGAC	2 cut(s)	377, 782
BsnI	GGCC	2 cut(s)	338, 729
Bsp143I	GATC	2 cut(s)	75, 511
BspACI	CCGC	4 cut(s)	21, 139, 191, 197
BspANI	GGCC	2 cut(s)	338, 729
BspCNI	CTCAG	2 cut(s)	506, 785
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	1 cut(s)	288
BspMI	ACCTGC	2 cut(s)	672, 694
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	525, 668
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	75, 511
Bst2UI	CCWGG	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	349, 441
BstDEI	CTNAG	4 cut(s)	493, 536, 738, 772
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	790
BstHHI	GCGC	2 cut(s)	37, 158
BstKTI	GATC	2 cut(s)	78, 514
BstMBI	GATC	2 cut(s)	75, 511
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 344, 449, 584, 593
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	2 cut(s)	283, 318
BstV1I	GCAGC	6 cut(s)	398, 406, 466, 599, 640, 713
BstV2I	GAAGAC	1 cut(s)	716
BsuRI	GGCC	2 cut(s)	338, 729
BtgI	CCRYGG	1 cut(s)	294
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	790
BtsIMutI	CAGTG	2 cut(s)	257, 518
BveI	ACCTGC	2 cut(s)	672, 694
Cac8I	GCNNGC	2 cut(s)	349, 441
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	1 cut(s)	747
CfoI	GCGC	2 cut(s)	37, 158
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	4 cut(s)	334, 499, 719, 748
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	4 cut(s)	493, 536, 738, 772
DpnI	GATC	2 cut(s)	77, 513
DpnII	GATC	2 cut(s)	75, 511
DriI	GACNNNNNGTC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	727
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EciI	GGCGGA	2 cut(s)	10, 212
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	318
FaeI	CATG	4 cut(s)	337, 502, 722, 751
FaiI	YATR	7 cut(s)	335, 403, 476, 500, 720, 749, 755
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	2 cut(s)	377, 782
FatI	CATG	4 cut(s)	333, 498, 718, 747
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	6 cut(s)	387, 420, 480, 588, 629, 702
FokI	GGATG	1 cut(s)	797
Fsp4HI	GCNGC	6 cut(s)	387, 420, 480, 588, 629, 702
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	2 cut(s)	36, 157
GluI	GCNGC	6 cut(s)	387, 420, 480, 588, 629, 702
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	2 cut(s)	338, 729
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	2 cut(s)	37, 158
Hin1II	CATG	4 cut(s)	337, 502, 722, 751
Hin6I	GCGC	2 cut(s)	35, 156
HinP1I	GCGC	2 cut(s)	35, 156
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	6 cut(s)	185, 200, 247, 601, 646, 770
HpaII	CCGG	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	6 cut(s)	89, 169, 184, 231, 269, 775
Hpy188III	TCNNGA	3 cut(s)	458, 650, 748
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	3 cut(s)	181, 184, 244
HpyAV	CCTTC	2 cut(s)	206, 349
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	96, 351, 386, 407, 422, 682
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 344, 449, 584, 593
HpyF3I	CTNAG	4 cut(s)	493, 536, 738, 772
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	337, 502, 722, 751
HspAI	GCGC	2 cut(s)	35, 156
Kzo9I	GATC	2 cut(s)	75, 511
LmnI	GCTCC	1 cut(s)	698
Lsp1109I	GCAGC	6 cut(s)	398, 406, 466, 599, 640, 713
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	2 cut(s)	77, 513
MboI	GATC	2 cut(s)	75, 511
MboII	GAAGA	4 cut(s)	54, 57, 212, 721
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	7 cut(s)	98, 163, 302, 381, 693, 795, 810
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	3 cut(s)	209, 256, 764
MmeI	TCCRAC	4 cut(s)	112, 162, 192, 247
MnlI	CCTC	8 cut(s)	95, 125, 130, 135, 145, 648, 724, 769
Mox20I	TGGCCA	1 cut(s)	729
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	729
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	285, 320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	5 cut(s)	130, 344, 449, 584, 593
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	75, 511
NlaIII	CATG	4 cut(s)	337, 502, 722, 751
NlaIV	GGNNCC	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	733
PagI	TCATGA	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	185, 601, 646
PkrI	GCNGC	6 cut(s)	388, 421, 481, 589, 630, 703
PleI	GAGTC	3 cut(s)	208, 255, 764
PpsI	GAGTC	3 cut(s)	208, 255, 764
Psp1406I	AACGTT	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	6 cut(s)	387, 420, 480, 588, 629, 702
Sau3AI	GATC	2 cut(s)	75, 511
Sau96I	GGNCC	1 cut(s)	287
ScaI	AGTACT	1 cut(s)	472
SchI	GAGTC	3 cut(s)	209, 256, 764
ScrFI	CCNGG	2 cut(s)	285, 320
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	7 cut(s)	98, 163, 302, 381, 693, 795, 810
SsiI	CCGC	4 cut(s)	21, 139, 191, 197
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	2 cut(s)	283, 318
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	74
TasI	AATT	7 cut(s)	98, 163, 302, 381, 693, 795, 810
TatI	WGTACW	1 cut(s)	470
TfiI	GAWTC	3 cut(s)	185, 601, 646
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	2 cut(s)	257, 525
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	6 cut(s)	386, 419, 479, 587, 628, 701
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	5 cut(s)	17, 48, 331, 736, 764
TspGWI	ACGGA	2 cut(s)	279, 283
TspRI	CASTG	2 cut(s)	257, 525
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	2 cut(s)	98, 810
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	468
ZrmI	AGTACT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.